Wall clock time and date at job start Tue Mar 31 2020 11:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86791 * 120.00454 * 2 1 4 4 H 1.48500 * 109.47574 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47198 * 300.00381 * 3 2 1 6 6 H 1.48503 * 109.47055 * 59.99627 * 3 2 1 7 7 C 1.38951 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00001 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00373 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00223 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00086 * 359.97438 * 10 9 7 12 12 C 1.50693 * 119.99980 * 180.02562 * 10 9 7 13 13 O 1.45205 * 109.47128 * 180.02562 * 12 10 9 14 14 C 1.34709 * 117.00161 * 180.02562 * 13 12 10 15 15 O 1.21469 * 119.99792 * 359.97438 * 14 13 12 16 16 C 1.47746 * 120.00266 * 179.97438 * 14 13 12 17 17 C 1.39705 * 120.08870 * 359.97438 * 16 14 13 18 18 C 1.38003 * 120.08925 * 180.02562 * 17 16 14 19 19 C 1.38165 * 120.28205 * 359.75981 * 18 17 16 20 20 C 1.39415 * 120.18034 * 0.51667 * 19 18 17 21 21 C 1.48436 * 120.04677 * 179.73659 * 20 19 18 22 22 C 1.46704 * 127.11171 * 359.72918 * 21 20 19 23 23 C 1.34375 * 106.02514 * 180.02562 * 22 21 20 24 24 O 1.34160 * 108.98686 * 359.76621 * 23 22 21 25 25 C 1.34089 * 110.74329 * 0.39389 * 24 23 22 26 26 C 1.39093 * 119.90235 * 359.46657 * 20 19 18 27 27 H 0.97001 * 119.99973 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99697 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47421 * 60.00187 * 12 10 9 30 30 H 1.09004 * 109.47516 * 299.99748 * 12 10 9 31 31 H 1.08000 * 119.95263 * 0.02562 * 17 16 14 32 32 H 1.08002 * 119.85801 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.91108 * 180.25577 * 19 18 17 34 34 H 1.07996 * 126.98837 * 0.02562 * 22 21 20 35 35 H 1.08004 * 125.50873 * 180.02562 * 23 22 21 36 36 H 1.08002 * 125.77119 * 179.88166 * 25 24 23 37 37 H 1.07998 * 120.13135 * 180.29550 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8629 0.0000 13 8 2.1870 -5.9667 0.0007 14 6 1.6721 -7.2115 -0.0002 15 8 0.4678 -7.3705 -0.0012 16 6 2.5720 -8.3832 -0.0002 17 6 3.9573 -8.2024 0.0004 18 6 4.7979 -9.2969 -0.0001 19 6 4.2760 -10.5762 0.0039 20 6 2.8954 -10.7700 -0.0024 21 6 2.3379 -12.1457 -0.0039 22 6 3.0897 -13.4054 -0.0049 23 6 2.1708 -14.3858 -0.0068 24 8 0.9467 -13.8368 -0.0017 25 6 1.0266 -12.4983 -0.0052 26 6 2.0411 -9.6723 -0.0015 27 1 -0.4850 0.8401 0.0004 28 1 0.3532 -2.3906 0.0005 29 1 0.6172 -4.9205 -0.8903 30 1 0.6165 -4.9209 0.8897 31 1 4.3709 -7.2048 0.0011 32 1 5.8682 -9.1529 0.0007 33 1 4.9393 -11.4285 0.0077 34 1 4.1635 -13.5213 -0.0044 35 1 2.3833 -15.4448 -0.0075 36 1 0.1894 -11.8159 -0.0042 37 1 0.9710 -9.8181 -0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760570236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:18 Heat of formation + Delta-G solvation = -80.482945 kcal Electronic energy + Delta-G solvation = -23824.700111 eV Core-core repulsion = 19919.935678 eV Total energy + Delta-G solvation = -3904.764433 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.69782 -40.48973 -38.99101 -38.03861 -36.07894 -34.03316 -33.95749 -31.60988 -31.38579 -31.15166 -29.13542 -28.35970 -25.01832 -24.06506 -23.61197 -22.00883 -20.74869 -20.37133 -19.58878 -18.57044 -18.07720 -17.26038 -16.71149 -16.31760 -16.25615 -16.20918 -15.68654 -15.14956 -14.99113 -14.56323 -14.16659 -14.12648 -13.93055 -13.49532 -13.22929 -13.09298 -12.96642 -12.63237 -12.28024 -12.07674 -11.81591 -11.63012 -11.35578 -11.15770 -10.61404 -10.49619 -10.42934 -10.39471 -10.30232 -9.62308 -9.38692 -9.27876 -8.53361 -8.36928 -8.09002 -6.50618 -3.92591 0.48255 0.81164 1.56966 2.19650 2.63584 2.71205 2.74471 3.11401 3.23629 3.31081 3.69168 3.73784 4.09557 4.19797 4.32051 4.53044 4.62538 4.74092 4.84990 4.99816 5.05787 5.12236 5.14560 5.15359 5.38550 5.52548 5.60752 5.64825 5.69075 5.77884 6.00694 6.02985 6.12240 6.14954 6.24100 6.55978 6.59269 6.77484 7.47512 7.81078 7.95193 8.47708 9.06530 9.38706 9.88369 10.66679 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.039211 B = 0.002089 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.906059 B =13401.535343 C =14100.295165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.320 6.320 14 C 0.505 3.495 15 O -0.512 6.512 16 C -0.113 4.113 17 C -0.059 4.059 18 C -0.127 4.127 19 C -0.077 4.077 20 C -0.027 4.027 21 C -0.147 4.147 22 C -0.205 4.205 23 C -0.035 4.035 24 O -0.180 6.180 25 C -0.016 4.016 26 C -0.054 4.054 27 H 0.273 0.727 28 H 0.395 0.605 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.153 0.847 35 H 0.204 0.796 36 H 0.208 0.792 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 -25.936 -0.002 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.190 5.190 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.234 6.234 14 C 0.350 3.650 15 O -0.402 6.402 16 C -0.114 4.114 17 C -0.077 4.077 18 C -0.145 4.145 19 C -0.095 4.095 20 C -0.027 4.027 21 C -0.148 4.148 22 C -0.224 4.224 23 C -0.101 4.101 24 O -0.076 6.076 25 C -0.084 4.084 26 C -0.072 4.072 27 H 0.083 0.917 28 H 0.229 0.771 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.165 0.835 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.171 0.829 35 H 0.221 0.779 36 H 0.224 0.776 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.964 -25.930 0.000 26.231 hybrid contribution -0.241 1.004 0.001 1.032 sum 3.723 -24.926 0.001 25.203 Atomic orbital electron populations 1.69622 1.06004 1.28390 1.49709 1.25322 0.95701 0.99896 0.96913 0.85734 0.79702 0.80726 0.77797 1.19084 1.20630 1.20624 1.19777 0.93509 0.81724 1.48072 0.87538 1.41709 1.09393 1.04087 1.63797 1.19298 0.88327 0.84044 0.85969 1.90558 1.13393 1.86792 1.55279 1.22782 0.90823 0.84377 1.03647 1.86583 1.40018 1.13839 1.82972 1.21189 0.87092 0.83809 0.72958 1.90810 1.16040 1.87000 1.46341 1.19011 0.93244 0.90800 1.08350 1.21731 0.91881 1.00771 0.93302 1.21133 1.00485 0.91811 1.01094 1.21376 0.94020 0.97546 0.96601 1.17866 0.92952 0.89835 1.02091 1.20182 0.92794 0.92530 1.09325 1.22813 1.00438 0.90801 1.08309 1.23927 0.81141 0.99291 1.05785 1.83896 1.31852 1.20268 1.71605 1.24206 0.98338 0.81453 1.04366 1.21168 1.00326 0.89949 0.95746 0.91671 0.77139 0.89391 0.89401 0.83480 0.84718 0.85379 0.82950 0.77924 0.77582 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -13.95 5.29 -10.97 -0.06 -14.01 16 10 C 0.44 10.56 7.86 -10.99 -0.09 10.47 16 11 O -0.58 -15.89 16.08 -14.12 -0.23 -16.12 16 12 C 0.06 1.17 5.95 36.00 0.21 1.39 16 13 O -0.32 -6.03 9.00 -47.20 -0.42 -6.46 16 14 C 0.50 8.41 7.90 34.62 0.27 8.69 16 15 O -0.51 -9.15 16.13 -19.24 -0.31 -9.46 16 16 C -0.11 -1.55 5.87 -105.03 -0.62 -2.16 16 17 C -0.06 -0.72 9.61 -39.12 -0.38 -1.10 16 18 C -0.13 -1.23 10.02 -39.69 -0.40 -1.63 16 19 C -0.08 -0.71 9.61 -39.17 -0.38 -1.09 16 20 C -0.03 -0.28 5.87 -104.94 -0.62 -0.90 16 21 C -0.15 -1.39 6.24 -103.15 -0.64 -2.03 16 22 C -0.20 -1.54 10.54 -37.53 -0.40 -1.94 16 23 C -0.03 -0.23 12.05 29.37 0.35 0.12 16 24 O -0.18 -1.55 10.55 6.67 0.07 -1.48 16 25 C -0.02 -0.14 11.53 29.86 0.34 0.21 16 26 C -0.05 -0.63 9.13 -38.83 -0.35 -0.99 16 27 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.15 1.90 7.60 -52.49 -0.40 1.50 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.13 0.85 7.24 -52.48 -0.38 0.47 16 34 H 0.15 0.82 7.60 -52.49 -0.40 0.43 16 35 H 0.20 0.55 8.06 -52.48 -0.42 0.13 16 36 H 0.21 1.31 7.33 -52.49 -0.38 0.92 16 37 H 0.14 1.48 6.67 -52.49 -0.35 1.13 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -33.65 340.51 -6.47 -40.12 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -3.44 Total: 8.81 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.92 Total: 1.14 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.67 Total: -37.32 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.89 Total: -33.52 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.65 -6.47 -40.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760570236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.363 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds