Wall clock time and date at job start Tue Mar 31 2020 11:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86791 * 120.00454 * 2 1 4 4 H 1.48500 * 109.47574 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47198 * 300.00381 * 3 2 1 6 6 H 1.48503 * 109.47055 * 59.99627 * 3 2 1 7 7 C 1.38951 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00001 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00373 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00223 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00086 * 359.97438 * 10 9 7 12 12 C 1.50693 * 119.99980 * 180.02562 * 10 9 7 13 13 O 1.45205 * 109.47128 * 180.02562 * 12 10 9 14 14 C 1.34709 * 117.00161 * 180.02562 * 13 12 10 15 15 O 1.21469 * 119.99792 * 359.97438 * 14 13 12 16 16 C 1.47746 * 120.00266 * 179.97438 * 14 13 12 17 17 C 1.39705 * 120.08870 * 359.97438 * 16 14 13 18 18 C 1.38003 * 120.08925 * 180.02562 * 17 16 14 19 19 C 1.38165 * 120.28205 * 359.75981 * 18 17 16 20 20 C 1.39415 * 120.18034 * 0.51667 * 19 18 17 21 21 C 1.48436 * 120.04677 * 179.73659 * 20 19 18 22 22 C 1.46704 * 127.11171 * 359.72918 * 21 20 19 23 23 C 1.34375 * 106.02514 * 180.02562 * 22 21 20 24 24 O 1.34160 * 108.98686 * 359.76621 * 23 22 21 25 25 C 1.34089 * 110.74329 * 0.39389 * 24 23 22 26 26 C 1.39093 * 119.90235 * 359.46657 * 20 19 18 27 27 H 0.97001 * 119.99973 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99697 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47421 * 60.00187 * 12 10 9 30 30 H 1.09004 * 109.47516 * 299.99748 * 12 10 9 31 31 H 1.08000 * 119.95263 * 0.02562 * 17 16 14 32 32 H 1.08002 * 119.85801 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.91108 * 180.25577 * 19 18 17 34 34 H 1.07996 * 126.98837 * 0.02562 * 22 21 20 35 35 H 1.08004 * 125.50873 * 180.02562 * 23 22 21 36 36 H 1.08002 * 125.77119 * 179.88166 * 25 24 23 37 37 H 1.07998 * 120.13135 * 180.29550 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8629 0.0000 13 8 2.1870 -5.9667 0.0007 14 6 1.6721 -7.2115 -0.0002 15 8 0.4678 -7.3705 -0.0012 16 6 2.5720 -8.3832 -0.0002 17 6 3.9573 -8.2024 0.0004 18 6 4.7979 -9.2969 -0.0001 19 6 4.2760 -10.5762 0.0039 20 6 2.8954 -10.7700 -0.0024 21 6 2.3379 -12.1457 -0.0039 22 6 3.0897 -13.4054 -0.0049 23 6 2.1708 -14.3858 -0.0068 24 8 0.9467 -13.8368 -0.0017 25 6 1.0266 -12.4983 -0.0052 26 6 2.0411 -9.6723 -0.0015 27 1 -0.4850 0.8401 0.0004 28 1 0.3532 -2.3906 0.0005 29 1 0.6172 -4.9205 -0.8903 30 1 0.6165 -4.9209 0.8897 31 1 4.3709 -7.2048 0.0011 32 1 5.8682 -9.1529 0.0007 33 1 4.9393 -11.4285 0.0077 34 1 4.1635 -13.5213 -0.0044 35 1 2.3833 -15.4448 -0.0075 36 1 0.1894 -11.8159 -0.0042 37 1 0.9710 -9.8181 -0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760570236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:18 Heat of formation + Delta-G solvation = -100.361498 kcal Electronic energy + Delta-G solvation = -23825.562109 eV Core-core repulsion = 19919.935678 eV Total energy + Delta-G solvation = -3905.626432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.28027 -41.79028 -40.26446 -39.64292 -37.53615 -36.05091 -34.69872 -33.43802 -32.48601 -31.84926 -30.09314 -29.69500 -26.78770 -25.29708 -24.42551 -22.79875 -21.52092 -21.47765 -21.24632 -20.09381 -19.43298 -18.40876 -17.98947 -17.76314 -17.38928 -17.04310 -16.86634 -16.53380 -15.98594 -15.83745 -15.78905 -15.66056 -14.93767 -14.67859 -14.25074 -14.17469 -13.81279 -13.71011 -13.65618 -13.57251 -13.20905 -12.95267 -12.67328 -12.47731 -12.20269 -12.11220 -11.92871 -11.75254 -11.59923 -11.35819 -10.53977 -10.14620 -10.13243 -9.96406 -9.10000 -8.53702 -6.04402 -0.45441 -0.01594 0.98902 1.26825 1.31205 1.34130 1.43811 1.58406 1.78494 1.85011 2.22039 2.28805 2.82681 2.98412 3.11731 3.52248 3.54206 3.72552 3.90092 3.98276 4.01116 4.12116 4.15665 4.19155 4.25776 4.44335 4.55014 4.72503 4.83800 4.92926 5.12738 5.17727 5.23020 5.35291 5.36420 5.43788 5.52785 5.77183 5.87439 6.20144 6.42215 6.54337 7.01302 7.37770 7.90956 8.63568 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.039211 B = 0.002089 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.906059 B =13401.535343 C =14100.295165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.437 3.563 11 O -0.616 6.616 12 C 0.071 3.929 13 O -0.336 6.336 14 C 0.506 3.494 15 O -0.530 6.530 16 C -0.136 4.136 17 C -0.072 4.072 18 C -0.119 4.119 19 C -0.067 4.067 20 C -0.027 4.027 21 C -0.170 4.170 22 C -0.215 4.215 23 C -0.032 4.032 24 O -0.192 6.192 25 C -0.025 4.025 26 C -0.060 4.060 27 H 0.281 0.719 28 H 0.400 0.600 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.133 0.867 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.175 0.825 35 H 0.241 0.759 36 H 0.218 0.782 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 -27.691 -0.001 28.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.823 3.177 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.006 4.006 13 O -0.251 6.251 14 C 0.352 3.648 15 O -0.421 6.421 16 C -0.137 4.137 17 C -0.091 4.091 18 C -0.137 4.137 19 C -0.084 4.084 20 C -0.027 4.027 21 C -0.172 4.172 22 C -0.234 4.234 23 C -0.097 4.097 24 O -0.089 6.089 25 C -0.092 4.092 26 C -0.078 4.078 27 H 0.091 0.909 28 H 0.235 0.765 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.151 0.849 32 H 0.182 0.818 33 H 0.179 0.821 34 H 0.192 0.808 35 H 0.257 0.743 36 H 0.235 0.765 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.698 -27.701 0.001 28.097 hybrid contribution -0.473 1.391 0.001 1.469 sum 4.225 -26.310 0.001 26.647 Atomic orbital electron populations 1.69680 1.06971 1.29699 1.49161 1.26155 0.96615 1.02657 0.95646 0.84775 0.78067 0.76471 0.78432 1.19509 1.19452 1.19441 1.19769 0.92968 0.83309 1.50593 0.89688 1.41741 1.09579 1.04168 1.63968 1.20034 0.88071 0.85288 0.84208 1.90522 1.15362 1.87669 1.56756 1.22570 0.90172 0.82376 1.05504 1.86583 1.40390 1.14622 1.83543 1.21727 0.87458 0.83539 0.72069 1.90783 1.16805 1.86996 1.47505 1.18968 0.93430 0.90130 1.11142 1.21727 0.91686 1.01214 0.94442 1.21430 1.01580 0.91106 0.99582 1.21772 0.93911 0.98349 0.94407 1.18055 0.93491 0.89925 1.01199 1.20341 0.93588 0.92677 1.10549 1.23130 1.01724 0.89929 1.08588 1.24706 0.80137 1.00848 1.04057 1.83909 1.33092 1.20198 1.71672 1.24526 0.98792 0.81853 1.04031 1.21239 1.00836 0.89669 0.96077 0.90946 0.76546 0.87441 0.87448 0.84900 0.81834 0.82099 0.80768 0.74333 0.76524 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.78 13.05 21.66 0.28 -48.49 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 1.00 42.15 29.55 68.60 2.03 44.18 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.34 -19.03 9.68 84.04 0.81 -18.22 16 8 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 9 N -0.56 -28.85 5.29 -306.99 -1.62 -30.47 16 10 C 0.44 21.66 7.86 87.65 0.69 22.35 16 11 O -0.62 -35.28 16.08 15.72 0.25 -35.02 16 12 C 0.07 2.76 5.95 71.23 0.42 3.18 16 13 O -0.34 -13.06 9.00 -49.80 -0.45 -13.51 16 14 C 0.51 17.29 7.90 70.34 0.56 17.85 16 15 O -0.53 -19.25 16.13 19.94 0.32 -18.93 16 16 C -0.14 -3.78 5.87 -20.13 -0.12 -3.90 16 17 C -0.07 -1.78 9.61 22.57 0.22 -1.57 16 18 C -0.12 -2.08 10.02 22.20 0.22 -1.85 16 19 C -0.07 -1.05 9.61 22.54 0.22 -0.83 16 20 C -0.03 -0.51 5.87 -20.07 -0.12 -0.63 16 21 C -0.17 -2.92 6.24 -18.91 -0.12 -3.04 16 22 C -0.22 -2.63 10.54 23.60 0.25 -2.38 16 23 C -0.03 -0.33 12.05 66.94 0.81 0.48 16 24 O -0.19 -2.99 10.55 0.94 0.01 -2.98 16 25 C -0.02 -0.40 11.53 67.25 0.78 0.38 16 26 C -0.06 -1.41 9.13 22.76 0.21 -1.20 16 27 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 28 H 0.40 19.52 7.90 -92.71 -0.73 18.78 16 29 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 30 H 0.11 3.75 8.14 -2.38 -0.02 3.73 16 31 H 0.13 3.60 7.60 -2.91 -0.02 3.58 16 32 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.16 1.46 7.24 -2.91 -0.02 1.44 16 34 H 0.17 1.21 7.60 -2.91 -0.02 1.19 16 35 H 0.24 0.39 8.06 -2.91 -0.02 0.36 16 36 H 0.22 2.68 7.33 -2.91 -0.02 2.66 16 37 H 0.14 3.06 6.67 -2.91 -0.02 3.04 16 Total: -1.00 -73.74 340.51 6.52 -67.22 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.41 Total: 27.47 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 5.29 Total: 10.54 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -1.34 Total: -78.96 kcal Atomic # 8 Polarization: -70.58 SS G_CDS: 0.14 Total: -70.45 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -73.74 6.52 -67.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760570236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.140 kcal (2) G-P(sol) polarization free energy of solvation -73.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds