Wall clock time and date at job start Tue Mar 31 2020 11:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48495 * 109.46834 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47057 * 299.99898 * 3 2 1 6 6 H 1.48498 * 109.46785 * 60.00058 * 3 2 1 7 7 C 1.38651 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00069 * 180.02562 * 7 2 1 9 9 O 1.34836 * 120.00464 * 359.97438 * 7 2 1 10 10 C 1.35751 * 117.00094 * 185.06029 * 9 7 2 11 11 C 1.38876 * 120.06902 * 354.46300 * 10 9 7 12 12 C 1.38095 * 119.93049 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06917 * 0.02615 * 12 11 10 14 14 C 1.50696 * 119.93077 * 179.97438 * 13 12 11 15 15 O 1.45203 * 109.47325 * 89.99838 * 14 13 12 16 16 C 1.34670 * 116.99870 * 179.97438 * 15 14 13 17 17 O 1.21429 * 120.00266 * 0.02562 * 16 15 14 18 18 C 1.48060 * 120.00033 * 179.97438 * 16 15 14 19 19 C 1.40010 * 120.89215 * 359.97438 * 18 16 15 20 20 C 1.37977 * 119.12569 * 180.02562 * 19 18 16 21 21 N 1.31906 * 120.98350 * 359.74353 * 20 19 18 22 22 C 1.32175 * 121.98296 * 0.52757 * 21 20 19 23 23 O 1.35682 * 119.62090 * 179.74766 * 22 21 20 24 24 C 1.38895 * 120.75462 * 359.47199 * 22 21 20 25 25 C 1.38301 * 120.13712 * 0.24894 * 13 12 11 26 26 C 1.38099 * 120.06994 * 359.45461 * 25 13 12 27 27 H 0.96998 * 120.00270 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03818 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.96682 * 180.02562 * 12 11 10 30 30 H 1.09000 * 109.47699 * 329.99301 * 14 13 12 31 31 H 1.09003 * 109.47027 * 210.00017 * 14 13 12 32 32 H 1.07999 * 120.44263 * 0.03829 * 19 18 16 33 33 H 1.08003 * 119.51136 * 179.97438 * 20 19 18 34 34 H 0.96701 * 114.00482 * 269.72440 * 23 22 21 35 35 H 1.08002 * 120.52417 * 180.27489 * 24 22 21 36 36 H 1.07997 * 119.96726 * 179.70918 * 25 13 12 37 37 H 1.07995 * 120.04103 * 180.27600 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3463 0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8908 2.3963 1.2125 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4570 -3.4396 0.0922 12 6 4.2022 -4.5972 0.1998 13 6 3.5685 -5.8206 0.3203 14 6 4.3848 -7.0820 0.4370 15 8 4.6540 -7.3565 1.8372 16 6 5.3777 -8.4575 2.1162 17 8 5.7733 -9.1685 1.2148 18 6 5.6918 -8.8004 3.5218 19 6 5.2465 -7.9930 4.5755 20 6 5.5607 -8.3466 5.8716 21 7 6.2663 -9.4313 6.1275 22 6 6.7118 -10.2199 5.1649 23 8 7.4379 -11.3213 5.4824 24 6 6.4404 -9.9372 3.8324 25 6 2.1872 -5.8893 0.3283 26 6 1.4364 -4.7346 0.2272 27 1 -0.4850 0.8400 -0.0004 28 1 3.9525 -2.4846 -0.0024 29 1 5.2810 -4.5472 0.1898 30 1 5.3270 -6.9558 -0.0962 31 1 3.8308 -7.9146 0.0035 32 1 4.6645 -7.1053 4.3764 33 1 5.2207 -7.7281 6.6891 34 1 8.3913 -11.1654 5.5240 35 1 6.8026 -10.5865 3.0491 36 1 1.6952 -6.8465 0.4179 37 1 0.3579 -4.7884 0.2380 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762847899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:30 Heat of formation + Delta-G solvation = -84.080892 kcal Electronic energy + Delta-G solvation = -23892.876204 eV Core-core repulsion = 19987.955753 eV Total energy + Delta-G solvation = -3904.920452 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17939 -40.13303 -39.13123 -37.50124 -37.09171 -36.15732 -33.23923 -32.48765 -30.85109 -30.52629 -30.29607 -26.58487 -25.53918 -24.51048 -23.83176 -22.12857 -21.61900 -20.68160 -19.33535 -18.14521 -17.96414 -17.38497 -16.97140 -16.60783 -16.45264 -16.10601 -15.68849 -14.85204 -14.70712 -14.56361 -14.39027 -13.82368 -13.75641 -13.57025 -13.23772 -12.93070 -12.84527 -12.53094 -12.34958 -12.18370 -11.79283 -11.48061 -11.18863 -10.90337 -10.88097 -10.75045 -10.59190 -10.50904 -10.42691 -9.97170 -9.46966 -9.43058 -8.96653 -8.33759 -7.40540 -6.57730 -4.16372 0.13102 0.51859 1.79357 2.09024 2.24043 2.63295 3.05141 3.06899 3.09834 3.12661 3.36641 3.86509 4.16423 4.26871 4.49528 4.51824 4.54924 4.95015 4.98027 5.06435 5.10307 5.16035 5.18099 5.26577 5.50740 5.57515 5.61889 5.69765 5.95340 6.06641 6.26316 6.26590 6.52750 6.73989 6.90677 6.98902 7.08442 7.19850 7.29713 7.39174 7.50778 7.65120 7.86990 8.87505 9.54715 10.59617 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.002285 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.604207 B =12250.632519 C =12835.260369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.095 0.905 9 O -0.170 6.170 10 C 0.164 3.836 11 C -0.238 4.238 12 C -0.043 4.043 13 C -0.208 4.208 14 C 0.131 3.869 15 O -0.341 6.341 16 C 0.505 3.495 17 O -0.501 6.501 18 C -0.059 4.059 19 C -0.125 4.125 20 C 0.119 3.881 21 N -0.483 5.483 22 C 0.304 3.696 23 O -0.478 6.478 24 C -0.127 4.127 25 C -0.047 4.047 26 C -0.196 4.196 27 H 0.272 0.728 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.173 0.827 34 H 0.403 0.597 35 H 0.155 0.845 36 H 0.113 0.887 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.508 -14.729 7.730 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.109 3.891 11 C -0.257 4.257 12 C -0.062 4.062 13 C -0.209 4.209 14 C 0.059 3.941 15 O -0.257 6.257 16 C 0.349 3.651 17 O -0.390 6.390 18 C -0.068 4.068 19 C -0.145 4.145 20 C -0.038 4.038 21 N -0.203 5.203 22 C 0.125 3.875 23 O -0.285 6.285 24 C -0.148 4.148 25 C -0.066 4.066 26 C -0.215 4.215 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.190 0.810 34 H 0.261 0.739 35 H 0.173 0.827 36 H 0.131 0.869 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.837 -15.218 8.231 20.963 hybrid contribution 0.772 1.154 -0.984 1.702 sum 12.609 -14.063 7.246 20.230 Atomic orbital electron populations 1.70042 1.06032 1.27874 1.45173 1.25342 0.95883 0.99001 0.96263 0.85611 0.79152 0.80101 0.78376 1.19005 1.20034 1.20010 1.21428 0.91944 0.80651 1.52918 0.88773 1.83980 1.34583 1.11605 1.77106 1.19449 0.90323 0.88047 0.91300 1.21142 0.93769 0.98888 1.11934 1.20617 0.98423 0.91486 0.95627 1.18817 0.93310 0.92703 1.16076 1.21807 0.99220 0.96142 0.76964 1.86693 1.64773 1.41445 1.32806 1.20959 0.75902 0.79426 0.88846 1.90834 1.50046 1.50432 1.47672 1.19487 0.99658 0.96193 0.91441 1.22659 0.98398 1.00673 0.92747 1.22646 0.93264 0.91778 0.96083 1.67059 1.10707 1.04241 1.38302 1.18939 0.94590 0.86948 0.87037 1.84812 1.23128 1.28400 1.92148 1.22260 0.98599 0.96496 0.97459 1.20511 0.92574 0.97012 0.96455 1.20201 0.99746 0.90116 1.11446 0.91845 0.85224 0.87303 0.90905 0.90856 0.82214 0.81023 0.73928 0.82714 0.86851 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.28 13.67 55.48 0.76 -23.52 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.70 29.55 -169.99 -5.02 14.68 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.53 9.49 30.88 0.29 -10.24 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.17 -4.66 9.76 0.03 0.00 -4.66 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.24 -4.88 9.17 -39.40 -0.36 -5.24 16 12 C -0.04 -0.75 9.69 -39.61 -0.38 -1.13 16 13 C -0.21 -3.39 5.52 -104.58 -0.58 -3.97 16 14 C 0.13 1.80 5.60 36.00 0.20 2.00 16 15 O -0.34 -4.63 9.56 -40.41 -0.39 -5.02 16 16 C 0.51 6.48 7.92 34.76 0.28 6.75 16 17 O -0.50 -7.37 16.23 -19.21 -0.31 -7.68 16 18 C -0.06 -0.62 5.91 -104.69 -0.62 -1.24 16 19 C -0.12 -1.12 9.70 -39.01 -0.38 -1.50 16 20 C 0.12 0.99 11.17 -17.62 -0.20 0.79 16 21 N -0.48 -4.92 10.36 -13.38 -0.14 -5.06 16 22 C 0.30 2.92 7.74 -17.16 -0.13 2.79 16 23 O -0.48 -3.81 13.56 -18.75 -0.25 -4.07 16 24 C -0.13 -1.23 9.61 -38.83 -0.37 -1.60 16 25 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 26 C -0.20 -3.91 9.99 -39.39 -0.39 -4.30 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.07 0.94 8.08 -51.93 -0.42 0.53 16 32 H 0.16 1.30 7.71 -52.49 -0.40 0.89 16 33 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.40 1.10 9.06 45.56 0.41 1.52 16 35 H 0.16 1.38 7.74 -52.49 -0.41 0.98 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -32.68 339.39 -6.26 -38.94 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -2.63 Total: 4.85 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -3.39 Total: -13.59 kcal Atomic # 7 Polarization: -29.20 SS G_CDS: 0.62 Total: -28.58 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.95 Total: -21.42 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.68 -6.26 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762847899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.138 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds