Wall clock time and date at job start Tue Mar 31 2020 10:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46898 * 268.71866 * 3 2 1 5 5 C 1.36754 * 120.00061 * 268.01822 * 4 3 2 6 6 H 1.07999 * 120.00519 * 199.35424 * 5 4 3 7 7 C 1.39136 * 119.99525 * 19.35424 * 5 4 3 8 8 N 1.31305 * 120.00279 * 22.23303 * 7 5 4 9 9 Si 1.86807 * 119.99917 * 202.23184 * 7 5 4 10 10 H 1.48496 * 109.47292 * 89.99895 * 9 7 5 11 11 H 1.48498 * 109.46989 * 210.00331 * 9 7 5 12 12 H 1.48499 * 109.46719 * 330.00022 * 9 7 5 13 13 C 1.34773 * 120.00193 * 88.02286 * 4 3 2 14 14 O 1.21538 * 119.99734 * 183.84125 * 13 4 3 15 15 C 1.48307 * 120.00012 * 3.84001 * 13 4 3 16 16 N 1.30827 * 126.32316 * 355.15447 * 15 13 4 17 17 O 1.21269 * 110.33132 * 180.02562 * 16 15 13 18 18 C 1.34227 * 109.91573 * 359.97438 * 17 16 15 19 19 C 1.47861 * 126.55666 * 179.97438 * 18 17 16 20 20 C 1.39587 * 120.12899 * 180.23476 * 19 18 17 21 21 C 1.37949 * 119.89942 * 180.27655 * 20 19 18 22 22 C 1.38336 * 120.17583 * 359.74137 * 21 20 19 23 23 C 1.38549 * 120.26429 * 0.03091 * 22 21 20 24 24 F 1.35105 * 119.95264 * 179.97438 * 23 22 21 25 25 C 1.38210 * 120.09312 * 359.96952 * 23 22 21 26 26 N 1.31906 * 106.88540 * 0.22908 * 18 17 16 27 27 H 4.40641 * 5.51415 * 179.97438 * 4 1 2 28 28 H 1.08997 * 109.47410 * 148.71614 * 3 2 1 29 29 H 1.08996 * 109.47054 * 28.71386 * 3 2 1 30 30 H 0.96998 * 120.00385 * 180.02562 * 8 7 5 31 31 H 1.07991 * 120.05013 * 0.02562 * 20 19 18 32 32 H 1.08003 * 119.90884 * 179.72845 * 21 20 19 33 33 H 1.07995 * 119.86824 * 179.97438 * 22 21 20 34 34 H 1.08003 * 120.08881 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0318 1.3809 5 6 3.4003 1.2293 1.9853 6 1 4.0379 1.2649 2.8563 7 6 2.8494 2.4020 1.4781 8 7 1.7688 2.3515 0.7338 9 14 3.6470 4.0484 1.8561 10 1 4.6535 4.3625 0.8104 11 1 2.6076 5.1087 1.8772 12 1 4.3141 3.9825 3.1812 13 6 3.3215 -1.1198 2.0556 14 8 3.6594 -1.0922 3.2228 15 6 3.1150 -2.4206 1.3739 16 7 2.6689 -2.5954 0.1566 17 8 2.6134 -3.7779 -0.1062 18 6 3.0306 -4.5001 0.9456 19 6 3.1123 -5.9743 1.0249 20 6 3.5641 -6.5890 2.1939 21 6 3.6438 -7.9646 2.2608 22 6 3.2722 -8.7363 1.1745 23 6 2.8183 -8.1337 0.0124 24 9 2.4575 -8.8934 -1.0449 25 6 2.7340 -6.7564 -0.0667 26 7 3.3485 -3.6432 1.8967 27 1 -1.0500 0.0002 0.0000 28 1 3.0090 0.8790 -0.5336 29 1 3.0097 -0.9004 -0.4937 30 1 1.3850 3.1689 0.3799 31 1 3.8546 -5.9886 3.0431 32 1 3.9975 -8.4403 3.1636 33 1 3.3370 -9.8128 1.2321 34 1 2.3806 -6.2867 -0.9727 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799088705.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:23 Heat of formation + Delta-G solvation = 86.948301 kcal Electronic energy + Delta-G solvation = -24688.533377 eV Core-core repulsion = 20699.861753 eV Total energy + Delta-G solvation = -3988.671623 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.92124 -46.77710 -40.68896 -40.07732 -37.49116 -36.74300 -34.77668 -33.91431 -33.23904 -31.87960 -31.30243 -28.57511 -27.78300 -25.85412 -25.71561 -23.80432 -23.19749 -21.68646 -19.93453 -19.54764 -19.47240 -18.54609 -18.37226 -17.93852 -17.23713 -17.12466 -16.89335 -16.62064 -16.19188 -15.98967 -15.84521 -15.04831 -14.82887 -14.60721 -14.49745 -14.23142 -13.87792 -13.72069 -13.41966 -12.96290 -12.91112 -12.82280 -12.62342 -12.39606 -12.21273 -12.17523 -11.69469 -11.33126 -11.30033 -10.91360 -10.63724 -10.10349 -10.06033 -9.77805 -8.48541 -6.13897 -0.78407 0.01328 0.09836 0.88406 1.37959 1.41281 1.44947 1.51727 1.73938 2.03336 2.20837 2.29020 2.37901 2.51717 2.63991 2.91393 3.15610 3.34910 3.64446 3.77523 3.84599 3.94518 3.99221 4.18689 4.23697 4.49210 4.61537 4.67005 4.80964 4.94246 5.01497 5.20090 5.28142 5.29928 5.30570 5.73331 5.76709 6.16809 6.79705 6.88134 7.06358 7.11348 7.62667 8.45294 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.003097 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.849780 B = 9039.379319 C = 9722.018237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.141 4.141 3 C 0.223 3.777 4 N -0.404 5.404 5 C -0.358 4.358 6 H 0.090 0.910 7 C 0.010 3.990 8 N -0.847 5.847 9 Si 1.001 2.999 10 H -0.259 1.259 11 H -0.272 1.272 12 H -0.271 1.271 13 C 0.491 3.509 14 O -0.600 6.600 15 C 0.150 3.850 16 N -0.355 5.355 17 O 0.102 5.898 18 C 0.225 3.775 19 C -0.016 4.016 20 C -0.079 4.079 21 C -0.079 4.079 22 C -0.109 4.109 23 C 0.089 3.911 24 F -0.138 7.138 25 C -0.114 4.114 26 N -0.458 5.458 27 H 0.233 0.767 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.282 0.718 31 H 0.139 0.861 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 -19.697 -4.932 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.143 4.143 3 C 0.101 3.899 4 N -0.121 5.121 5 C -0.485 4.485 6 H 0.108 0.892 7 C -0.197 4.197 8 N -0.481 5.481 9 Si 0.822 3.178 10 H -0.184 1.184 11 H -0.197 1.197 12 H -0.196 1.196 13 C 0.278 3.722 14 O -0.486 6.486 15 C -0.123 4.123 16 N -0.062 5.062 17 O 0.036 5.964 18 C 0.008 3.992 19 C -0.018 4.018 20 C -0.099 4.099 21 C -0.097 4.097 22 C -0.128 4.128 23 C 0.070 3.930 24 F -0.116 7.116 25 C -0.135 4.135 26 N -0.191 5.191 27 H 0.250 0.750 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.157 0.843 32 H 0.197 0.803 33 H 0.193 0.807 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.983 -18.676 -4.600 19.260 hybrid contribution -0.229 1.016 -0.082 1.045 sum 0.754 -17.660 -4.683 18.286 Atomic orbital electron populations 1.25027 0.96221 1.05354 0.99697 1.22923 0.94448 0.96491 1.00409 1.18656 0.85753 1.02662 0.82859 1.43749 1.52342 1.04516 1.11457 1.19842 1.30242 0.82503 1.15926 0.89235 1.26347 0.94351 1.03070 0.95976 1.70155 1.15564 1.30984 1.31392 0.84838 0.78205 0.75474 0.79251 1.18374 1.19669 1.19571 1.16624 0.88639 0.81247 0.85656 1.90591 1.55475 1.85838 1.16653 1.25546 1.01832 0.95841 0.89058 1.75063 1.19354 0.95370 1.16455 1.85336 1.60847 1.11813 1.38372 1.26880 0.94060 0.96582 0.81668 1.16988 1.06410 0.81203 0.97216 1.21528 0.95908 0.96429 0.95988 1.21342 0.97285 0.91212 0.99852 1.21809 0.96938 1.03255 0.90822 1.17493 1.01823 0.87896 0.85773 1.91538 1.89594 1.75246 1.55231 1.21245 1.00257 0.92709 0.99274 1.72141 1.20986 0.98025 1.27944 0.75032 0.88771 0.87733 0.90734 0.84333 0.80272 0.80728 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -10.62 19.18 74.32 1.43 -9.19 16 2 C -0.14 -6.78 10.60 31.13 0.33 -6.45 16 3 C 0.22 10.78 4.78 84.57 0.40 11.18 16 4 N -0.40 -22.23 2.58 -648.23 -1.67 -23.90 16 5 C -0.36 -20.31 9.26 84.14 0.78 -19.54 16 6 H 0.09 5.36 7.45 -2.91 -0.02 5.34 16 7 C 0.01 0.53 4.84 84.99 0.41 0.94 16 8 N -0.85 -43.53 9.31 21.69 0.20 -43.32 16 9 Si 1.00 40.44 29.61 68.60 2.03 42.48 16 10 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 11 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 13 C 0.49 27.47 7.63 86.92 0.66 28.13 16 14 O -0.60 -37.41 16.78 -3.84 -0.06 -37.47 16 15 C 0.15 7.05 7.71 137.31 1.06 8.10 16 16 N -0.35 -14.61 8.22 -57.86 -0.48 -15.08 16 17 O 0.10 3.43 11.11 69.42 0.77 4.20 16 18 C 0.23 7.24 8.00 87.31 0.70 7.94 16 19 C -0.02 -0.36 5.87 -20.10 -0.12 -0.48 16 20 C -0.08 -1.46 9.70 22.53 0.22 -1.24 16 21 C -0.08 -0.85 10.03 22.22 0.22 -0.63 16 22 C -0.11 -1.10 10.02 22.37 0.22 -0.87 16 23 C 0.09 1.34 7.29 22.34 0.16 1.50 16 24 F -0.14 -2.25 17.26 44.97 0.78 -1.47 16 25 C -0.11 -2.07 9.71 22.57 0.22 -1.85 16 26 N -0.46 -19.04 11.27 -302.47 -3.41 -22.44 16 27 H 0.23 7.93 7.80 -4.42 -0.03 7.90 16 28 H 0.09 4.58 6.86 -2.39 -0.02 4.57 16 29 H 0.11 4.68 4.98 -2.39 -0.01 4.66 16 30 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 31 H 0.14 2.89 7.87 -2.92 -0.02 2.87 16 32 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 33 H 0.18 0.67 8.06 -2.91 -0.02 0.64 16 34 H 0.16 2.52 7.94 -2.91 -0.02 2.50 16 Total: -1.00 -73.08 319.40 6.04 -67.04 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.17 Total: 12.42 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 6.70 Total: 17.56 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -5.35 Total: -104.76 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: 0.71 Total: -33.27 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.78 Total: -1.47 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.48 kcal Total: -73.08 6.04 -67.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799088705.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.990 kcal (2) G-P(sol) polarization free energy of solvation -73.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds