Wall clock time and date at job start Tue Mar 31 2020 11:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48497 * 109.47312 * 270.00232 * 3 2 1 5 5 H 1.48502 * 109.47244 * 30.00548 * 3 2 1 6 6 H 1.48511 * 109.47044 * 150.00214 * 3 2 1 7 7 C 1.38700 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00538 * 179.97438 * 7 2 1 9 9 O 1.34821 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.35501 * 116.99788 * 185.06389 * 9 7 2 11 11 C 1.38837 * 120.16870 * 354.40154 * 10 9 7 12 12 C 1.38024 * 120.07747 * 180.27918 * 11 10 9 13 13 C 1.38587 * 120.41346 * 359.74386 * 12 11 10 14 14 C 1.37806 * 120.33352 * 359.97438 * 13 12 11 15 15 C 1.39719 * 119.91280 * 0.02562 * 14 13 12 16 16 C 1.47396 * 120.20589 * 179.97438 * 15 14 13 17 17 O 1.21508 * 120.00348 * 179.97438 * 16 15 14 18 18 O 1.34761 * 120.00001 * 0.02562 * 16 15 14 19 19 C 1.45196 * 117.00332 * 180.02562 * 18 16 15 20 20 C 1.50701 * 109.47329 * 179.97438 * 19 18 16 21 21 C 1.38679 * 120.41260 * 270.02512 * 20 19 18 22 22 C 1.38626 * 118.44804 * 179.97438 * 21 20 19 23 23 C 1.38205 * 119.17338 * 359.77540 * 22 21 20 24 24 N 1.31967 * 120.75431 * 0.47230 * 23 22 21 25 25 O 1.41602 * 119.15385 * 179.77015 * 24 23 22 26 26 C 1.32000 * 121.69270 * 359.49594 * 24 23 22 27 27 H 0.97005 * 119.99694 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.95996 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.79404 * 179.76196 * 12 11 10 30 30 H 1.08005 * 119.83456 * 180.02562 * 13 12 11 31 31 H 1.08003 * 120.04071 * 180.02562 * 14 13 12 32 32 H 1.08998 * 109.46975 * 59.99406 * 19 18 16 33 33 H 1.09003 * 109.47174 * 299.99350 * 19 18 16 34 34 H 1.08001 * 120.77033 * 359.97438 * 21 20 19 35 35 H 1.07999 * 120.40935 * 179.97438 * 22 21 20 36 36 H 1.08005 * 119.61873 * 180.25279 * 23 22 21 37 37 H 1.08003 * 119.62391 * 180.25216 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0086 -1.2012 -0.0005 8 1 3.0887 -1.2013 -0.0010 9 8 1.3345 -2.3687 -0.0005 10 6 2.0685 -3.5028 0.1055 11 6 3.4553 -3.4402 0.0911 12 6 4.2011 -4.5972 0.1934 13 6 3.5745 -5.8272 0.3164 14 6 2.1990 -5.9084 0.3384 15 6 1.4306 -4.7460 0.2358 16 6 -0.0410 -4.8255 0.2581 17 8 -0.7056 -3.8122 0.1690 18 8 -0.6494 -6.0220 0.3782 19 6 -2.1013 -6.0248 0.3924 20 6 -2.5996 -7.4401 0.5318 21 6 -2.8427 -8.2129 -0.5938 22 6 -3.2999 -9.5098 -0.4183 23 6 -3.4927 -9.9885 0.8638 24 7 -3.2556 -9.2233 1.9125 25 8 -3.4693 -9.7468 3.2108 26 6 -2.8193 -7.9843 1.7826 27 1 -0.4850 0.8401 0.0004 28 1 3.9512 -2.4856 -0.0053 29 1 5.2796 -4.5435 0.1778 30 1 4.1672 -6.7265 0.3963 31 1 1.7157 -6.8694 0.4349 32 1 -2.4746 -5.5985 -0.5388 33 1 -2.4576 -5.4294 1.2331 34 1 -2.6796 -7.8136 -1.5839 35 1 -3.4998 -10.1393 -1.2728 36 1 -3.8447 -10.9992 1.0089 37 1 -2.6323 -7.3889 2.6641 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802183500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:11 Heat of formation + Delta-G solvation = -16.526007 kcal Electronic energy + Delta-G solvation = -24730.317059 eV Core-core repulsion = 20828.326007 eV Total energy + Delta-G solvation = -3901.991052 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57674 -39.98485 -38.80594 -36.53663 -36.09939 -34.84871 -32.79557 -32.49967 -30.79412 -30.06650 -29.07452 -27.50951 -25.55843 -24.42552 -23.82532 -22.68150 -21.66189 -20.38787 -18.21336 -18.14924 -17.72433 -17.63000 -16.80164 -16.43180 -15.77449 -15.71455 -15.49198 -14.97925 -14.74742 -14.49336 -14.32014 -13.90654 -13.81397 -13.54468 -12.88261 -12.77233 -12.53108 -12.16587 -12.12954 -11.83649 -11.44877 -11.36859 -11.22469 -11.00710 -10.88525 -10.55352 -10.40819 -10.05931 -9.83351 -9.48122 -9.37421 -9.01337 -8.77255 -8.43281 -7.48105 -6.60027 -4.19691 0.16644 0.31858 1.48077 2.21337 2.29573 2.65587 3.03592 3.05076 3.09833 3.26675 3.29542 3.81799 4.07535 4.12969 4.17932 4.25977 4.42687 4.44625 4.91752 4.99211 5.03112 5.05634 5.23803 5.31791 5.43088 5.47738 5.50820 5.61998 5.67846 5.94188 6.02745 6.45504 6.49127 6.53823 6.74420 6.82929 6.87714 6.98738 7.12889 7.19483 7.55784 7.78448 8.51345 8.80303 9.47681 10.53500 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.003084 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.691075 B = 9076.639244 C =10081.027216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.403 4.403 8 H 0.097 0.903 9 O -0.124 6.124 10 C 0.191 3.809 11 C -0.238 4.238 12 C -0.042 4.042 13 C -0.234 4.234 14 C -0.015 4.015 15 C -0.218 4.218 16 C 0.500 3.500 17 O -0.472 6.472 18 O -0.362 6.362 19 C 0.110 3.890 20 C -0.086 4.086 21 C -0.056 4.056 22 C -0.124 4.124 23 C 0.075 3.925 24 N -0.119 5.119 25 O -0.553 6.553 26 C 0.096 3.904 27 H 0.274 0.726 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.182 0.818 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 -13.261 -5.184 14.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.478 4.478 8 H 0.114 0.886 9 O -0.022 6.022 10 C 0.132 3.868 11 C -0.257 4.257 12 C -0.061 4.061 13 C -0.253 4.253 14 C -0.033 4.033 15 C -0.221 4.221 16 C 0.346 3.654 17 O -0.358 6.358 18 O -0.282 6.282 19 C 0.036 3.964 20 C -0.087 4.087 21 C -0.081 4.081 22 C -0.142 4.142 23 C -0.070 4.070 24 N 0.203 4.797 25 O -0.608 6.608 26 C -0.049 4.049 27 H 0.084 0.916 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.141 0.859 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.175 0.825 35 H 0.184 0.816 36 H 0.199 0.801 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.495 -12.845 -4.808 13.941 hybrid contribution 0.392 0.738 0.141 0.848 sum -2.103 -12.107 -4.668 13.145 Atomic orbital electron populations 1.70106 1.06060 1.28065 1.41952 1.25421 0.95861 0.99097 0.95904 0.85686 0.79051 0.79655 0.78916 1.19626 1.20014 1.18927 1.21547 0.92053 0.80831 1.53406 0.88567 1.84127 1.33911 1.11214 1.72970 1.19207 0.90025 0.86925 0.90679 1.21125 0.92995 0.99520 1.12041 1.20987 0.98871 0.92255 0.93943 1.20552 0.94109 0.97271 1.13355 1.20948 0.93603 0.96137 0.92657 1.17945 0.87939 0.92591 1.23631 1.21130 0.89179 0.80493 0.74617 1.91025 1.65611 1.34872 1.44318 1.86581 1.20128 1.35535 1.85926 1.21498 0.79726 0.90381 1.04827 1.20190 0.99321 0.97326 0.91901 1.21869 0.93183 0.93005 1.00092 1.21834 0.99093 0.96558 0.96741 1.22745 0.98892 0.99485 0.85926 1.43264 1.19655 1.05941 1.10832 1.97668 1.87805 1.80079 0.95216 1.22623 0.95703 0.86513 1.00088 0.91637 0.84755 0.86880 0.86934 0.85850 0.89012 0.89287 0.82469 0.81605 0.80061 0.79837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.77 13.67 55.48 0.76 -23.01 16 2 C 0.05 1.21 5.49 -17.52 -0.10 1.11 16 3 Si 0.94 19.51 29.55 -169.99 -5.02 14.48 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.40 -10.80 9.49 30.90 0.29 -10.50 16 8 H 0.10 2.32 5.21 -52.49 -0.27 2.05 16 9 O -0.12 -3.46 7.84 -21.02 -0.16 -3.62 16 10 C 0.19 4.49 6.66 -38.57 -0.26 4.23 16 11 C -0.24 -4.80 9.16 -39.44 -0.36 -5.16 16 12 C -0.04 -0.70 10.03 -39.53 -0.40 -1.09 16 13 C -0.23 -3.69 10.02 -39.61 -0.40 -4.09 16 14 C -0.02 -0.26 9.61 -39.19 -0.38 -0.63 16 15 C -0.22 -4.55 5.89 -104.83 -0.62 -5.16 16 16 C 0.50 10.31 7.89 34.46 0.27 10.59 16 17 O -0.47 -11.68 14.96 -26.59 -0.40 -12.08 16 18 O -0.36 -5.75 9.45 -40.66 -0.38 -6.13 16 19 C 0.11 1.35 5.62 36.01 0.20 1.55 16 20 C -0.09 -0.84 5.54 -104.49 -0.58 -1.42 16 21 C -0.06 -0.38 9.86 -39.28 -0.39 -0.77 16 22 C -0.12 -0.67 10.11 -39.45 -0.40 -1.07 16 23 C 0.08 0.65 10.69 -17.51 -0.19 0.47 16 24 N -0.12 -1.59 3.58 -13.21 -0.05 -1.64 16 25 O -0.55 -11.12 20.06 -11.47 -0.23 -11.35 16 26 C 0.10 1.12 10.37 -17.51 -0.18 0.94 16 27 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.13 2.65 5.64 -52.48 -0.30 2.36 16 29 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.12 1.79 7.61 -52.48 -0.40 1.39 16 32 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 33 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 34 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.17 0.25 8.06 -52.49 -0.42 -0.17 16 36 H 0.18 1.18 8.06 -52.48 -0.42 0.75 16 37 H 0.18 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -38.51 338.16 -7.34 -45.86 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -3.48 Total: 3.41 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -3.47 Total: -11.02 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.71 Total: -24.65 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.18 Total: -33.18 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.51 -7.34 -45.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802183500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.330 kcal (2) G-P(sol) polarization free energy of solvation -38.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds