Wall clock time and date at job start Tue Mar 31 2020 11:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00447 * 2 1 4 4 H 1.48506 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46965 * 299.99942 * 3 2 1 6 6 H 1.48496 * 109.47347 * 59.99997 * 3 2 1 7 7 C 1.37883 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99930 * 165.70986 * 7 2 1 9 9 C 1.50692 * 120.00097 * 345.71314 * 7 2 1 10 10 C 1.53003 * 115.55034 * 324.65615 * 9 7 2 11 11 O 1.45194 * 109.47354 * 305.83038 * 10 9 7 12 12 C 1.34670 * 117.00402 * 179.32992 * 11 10 9 13 13 O 1.21437 * 119.99625 * 5.51525 * 12 11 10 14 14 C 1.48040 * 120.00455 * 185.51155 * 12 11 10 15 15 C 1.39876 * 120.92962 * 0.95131 * 14 12 11 16 16 C 1.38127 * 119.00076 * 180.02562 * 15 14 12 17 17 N 1.31819 * 120.90334 * 0.02562 * 16 15 14 18 18 C 1.31803 * 122.05794 * 359.70247 * 17 16 15 19 19 C 1.50698 * 119.54660 * 180.29392 * 18 17 16 20 20 F 1.39903 * 109.47186 * 270.28898 * 19 18 17 21 21 F 1.39899 * 109.47554 * 30.28999 * 19 18 17 22 22 F 1.39904 * 109.46890 * 150.28997 * 19 18 17 23 23 C 1.38169 * 120.89720 * 0.59021 * 18 17 16 24 24 C 1.52997 * 117.50415 * 110.33142 * 9 7 2 25 25 C 1.53001 * 117.49961 * 178.99338 * 9 7 2 26 26 H 0.97004 * 119.99587 * 5.08660 * 1 2 3 27 27 H 1.08997 * 109.47368 * 185.82287 * 10 9 7 28 28 H 1.09001 * 109.46812 * 65.82710 * 10 9 7 29 29 H 1.08003 * 120.49945 * 359.97438 * 15 14 12 30 30 H 1.08005 * 119.54573 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.49754 * 179.70612 * 23 18 17 32 32 H 1.09000 * 117.50554 * 215.00612 * 24 9 7 33 33 H 1.09002 * 117.49392 * 0.02562 * 24 9 7 34 34 H 1.08999 * 117.49926 * 359.97367 * 25 9 7 35 35 H 1.09000 * 117.50202 * 144.97303 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0594 -1.2088 -0.2303 9 6 1.2858 -2.4788 0.3232 10 6 0.1818 -2.3707 1.3769 11 8 0.7205 -1.7662 2.5821 12 6 -0.1317 -1.5857 3.6091 13 8 -1.2660 -2.0136 3.5392 14 6 0.3142 -0.8656 4.8233 15 6 1.6101 -0.3475 4.9167 16 6 1.9843 0.3170 6.0683 17 7 1.1396 0.4648 7.0695 18 6 -0.0916 -0.0030 7.0208 19 6 -1.0122 0.2039 8.1959 20 9 -0.8803 -0.8673 9.0860 21 9 -0.6763 1.3955 8.8474 22 9 -2.3347 0.2757 7.7452 23 6 -0.5478 -0.6858 5.9096 24 6 1.0790 -3.4782 -0.8167 25 6 2.1008 -3.7731 0.2842 26 1 -0.4850 0.8368 -0.0745 27 1 -0.1985 -3.3657 1.6082 28 1 -0.6290 -1.7525 0.9915 29 1 2.3079 -0.4659 4.1009 30 1 2.9830 0.7202 6.1500 31 1 -1.5565 -1.0705 5.8786 32 1 0.1563 -4.0586 -0.8161 33 1 1.4631 -3.2065 -1.8000 34 1 3.1566 -3.6955 0.0247 35 1 1.8507 -4.5475 1.0094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808988659.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:08 Heat of formation + Delta-G solvation = -167.020233 kcal Electronic energy + Delta-G solvation = -25958.689503 eV Core-core repulsion = 21508.315792 eV Total energy + Delta-G solvation = -4450.373712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.32194 -47.85737 -47.76868 -40.81740 -39.40788 -36.91859 -35.32341 -33.18793 -32.37844 -32.29422 -27.16630 -26.85476 -25.62835 -24.55744 -23.20244 -21.39580 -20.93802 -19.34490 -18.82789 -18.69901 -18.54196 -17.30952 -16.90075 -16.26448 -15.83628 -15.74998 -15.52004 -14.81814 -14.71917 -14.64289 -14.49255 -14.22166 -14.13921 -13.93175 -13.92589 -13.84343 -13.25135 -13.00550 -12.27271 -12.25070 -11.97129 -11.75039 -11.09949 -10.95810 -10.61934 -10.51050 -10.45320 -10.23676 -10.04011 -9.75650 -9.71453 -9.59219 -9.26901 -8.89466 -8.24338 -6.20549 -4.21889 0.30632 0.52539 2.23282 2.63730 2.98359 3.15430 3.26199 3.29156 3.31700 3.43677 3.78311 4.20230 4.24606 4.34017 4.50179 4.64366 4.69639 4.86735 5.07788 5.27616 5.37049 5.53752 5.79345 5.88972 6.05738 6.10910 6.29749 6.45217 6.53803 6.62264 6.83420 7.12734 7.20140 7.24312 7.28483 7.76149 8.16796 8.26682 8.72841 9.37504 10.82513 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.003871 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.996673 B = 7232.403770 C = 7915.132263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.485 4.485 8 H 0.065 0.935 9 C 0.046 3.954 10 C 0.115 3.885 11 O -0.316 6.316 12 C 0.500 3.500 13 O -0.507 6.507 14 C -0.061 4.061 15 C -0.080 4.080 16 C 0.098 3.902 17 N -0.429 5.429 18 C 0.022 3.978 19 C 0.528 3.472 20 F -0.171 7.171 21 F -0.164 7.164 22 F -0.169 7.169 23 C -0.068 4.068 24 C -0.190 4.190 25 C -0.208 4.208 26 H 0.264 0.736 27 H 0.033 0.967 28 H 0.114 0.886 29 H 0.170 0.830 30 H 0.180 0.820 31 H 0.161 0.839 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 -0.038 12.848 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.046 3.954 10 C 0.042 3.958 11 O -0.230 6.230 12 C 0.343 3.657 13 O -0.397 6.397 14 C -0.071 4.071 15 C -0.100 4.100 16 C -0.060 4.060 17 N -0.139 5.139 18 C -0.116 4.116 19 C 0.473 3.527 20 F -0.152 7.152 21 F -0.145 7.145 22 F -0.150 7.150 23 C -0.088 4.088 24 C -0.228 4.228 25 C -0.245 4.245 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.132 0.868 29 H 0.188 0.812 30 H 0.196 0.804 31 H 0.179 0.821 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.620 0.376 13.610 13.629 hybrid contribution -0.120 0.372 -0.774 0.868 sum 0.500 0.748 12.835 12.867 Atomic orbital electron populations 1.69810 1.06170 1.27099 1.48806 1.24935 0.94702 0.99206 0.93959 0.86547 0.80417 0.83340 0.77878 1.19415 1.20977 1.20690 1.20446 0.95269 0.89016 1.47437 0.91719 1.18871 0.94391 0.89562 0.92586 1.22945 0.98761 0.94857 0.79232 1.86502 1.40565 1.72716 1.23167 1.20678 0.83816 0.77489 0.83718 1.90795 1.20152 1.47109 1.81632 1.19694 0.94784 0.99337 0.93254 1.22989 0.95784 0.91843 0.99386 1.22890 0.99248 0.96034 0.87840 1.67018 1.01516 1.15124 1.30209 1.20748 0.93709 1.02780 0.94401 1.17723 0.78548 0.74627 0.81839 1.93240 1.95712 1.56159 1.70084 1.93230 1.92137 1.46622 1.82514 1.93234 1.36731 1.96049 1.89019 1.21934 1.01632 0.94355 0.90862 1.22975 0.98849 1.05856 0.95133 1.22979 0.96823 1.02115 1.02632 0.92593 0.94846 0.86791 0.81249 0.80352 0.82108 0.91406 0.89650 0.90189 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.23 10.93 55.43 0.61 -22.62 16 2 C 0.08 1.91 5.15 -17.82 -0.09 1.81 16 3 Si 0.89 19.63 29.56 -169.99 -5.03 14.61 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.48 -12.23 8.76 -34.44 -0.30 -12.53 16 8 H 0.06 1.63 7.86 -52.48 -0.41 1.22 16 9 C 0.05 1.08 2.10 -155.66 -0.33 0.75 16 10 C 0.11 2.62 4.61 37.16 0.17 2.79 16 11 O -0.32 -6.76 9.25 -40.41 -0.37 -7.13 16 12 C 0.50 9.74 7.92 34.75 0.28 10.02 16 13 O -0.51 -10.79 16.23 -19.22 -0.31 -11.10 16 14 C -0.06 -0.96 5.91 -104.67 -0.62 -1.58 16 15 C -0.08 -1.06 9.71 -39.01 -0.38 -1.44 16 16 C 0.10 1.12 11.17 -17.60 -0.20 0.92 16 17 N -0.43 -5.67 9.94 -9.52 -0.09 -5.76 16 18 C 0.02 0.30 6.29 -82.63 -0.52 -0.22 16 19 C 0.53 6.58 3.43 36.00 0.12 6.70 16 20 F -0.17 -2.09 17.30 2.25 0.04 -2.05 16 21 F -0.16 -2.10 17.04 2.25 0.04 -2.06 16 22 F -0.17 -2.07 16.44 2.25 0.04 -2.03 16 23 C -0.07 -0.96 9.00 -39.01 -0.35 -1.31 16 24 C -0.19 -4.01 9.96 -26.69 -0.27 -4.27 16 25 C -0.21 -4.20 9.92 -26.69 -0.26 -4.46 16 26 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 27 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 28 H 0.11 2.91 6.08 -51.93 -0.32 2.59 16 29 H 0.17 2.15 7.71 -52.48 -0.40 1.75 16 30 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.16 2.15 7.29 -52.49 -0.38 1.77 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 327.87 15.07 4.94 4.94 Total: -1.00 -27.83 327.87 -6.07 -33.90 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.18 Total: 2.15 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.75 Total: -2.83 kcal Atomic # 7 Polarization: -28.89 SS G_CDS: 0.51 Total: -28.38 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.69 Total: -18.24 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.11 Total: -6.15 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.83 -6.07 -33.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808988659.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.121 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds