Wall clock time and date at job start Tue Mar 31 2020 11:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00447 * 2 1 4 4 H 1.48506 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46965 * 299.99942 * 3 2 1 6 6 H 1.48496 * 109.47347 * 59.99997 * 3 2 1 7 7 C 1.37883 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99930 * 165.70986 * 7 2 1 9 9 C 1.50692 * 120.00097 * 345.71314 * 7 2 1 10 10 C 1.53003 * 115.55034 * 324.65615 * 9 7 2 11 11 O 1.45194 * 109.47354 * 305.83038 * 10 9 7 12 12 C 1.34670 * 117.00402 * 179.32992 * 11 10 9 13 13 O 1.21437 * 119.99625 * 5.51525 * 12 11 10 14 14 C 1.48040 * 120.00455 * 185.51155 * 12 11 10 15 15 C 1.39876 * 120.92962 * 0.95131 * 14 12 11 16 16 C 1.38127 * 119.00076 * 180.02562 * 15 14 12 17 17 N 1.31819 * 120.90334 * 0.02562 * 16 15 14 18 18 C 1.31803 * 122.05794 * 359.70247 * 17 16 15 19 19 C 1.50698 * 119.54660 * 180.29392 * 18 17 16 20 20 F 1.39903 * 109.47186 * 270.28898 * 19 18 17 21 21 F 1.39899 * 109.47554 * 30.28999 * 19 18 17 22 22 F 1.39904 * 109.46890 * 150.28997 * 19 18 17 23 23 C 1.38169 * 120.89720 * 0.59021 * 18 17 16 24 24 C 1.52997 * 117.50415 * 110.33142 * 9 7 2 25 25 C 1.53001 * 117.49961 * 178.99338 * 9 7 2 26 26 H 0.97004 * 119.99587 * 5.08660 * 1 2 3 27 27 H 1.08997 * 109.47368 * 185.82287 * 10 9 7 28 28 H 1.09001 * 109.46812 * 65.82710 * 10 9 7 29 29 H 1.08003 * 120.49945 * 359.97438 * 15 14 12 30 30 H 1.08005 * 119.54573 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.49754 * 179.70612 * 23 18 17 32 32 H 1.09000 * 117.50554 * 215.00612 * 24 9 7 33 33 H 1.09002 * 117.49392 * 0.02562 * 24 9 7 34 34 H 1.08999 * 117.49926 * 359.97367 * 25 9 7 35 35 H 1.09000 * 117.50202 * 144.97303 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0594 -1.2088 -0.2303 9 6 1.2858 -2.4788 0.3232 10 6 0.1818 -2.3707 1.3769 11 8 0.7205 -1.7662 2.5821 12 6 -0.1317 -1.5857 3.6091 13 8 -1.2660 -2.0136 3.5392 14 6 0.3142 -0.8656 4.8233 15 6 1.6101 -0.3475 4.9167 16 6 1.9843 0.3170 6.0683 17 7 1.1396 0.4648 7.0695 18 6 -0.0916 -0.0030 7.0208 19 6 -1.0122 0.2039 8.1959 20 9 -0.8803 -0.8673 9.0860 21 9 -0.6763 1.3955 8.8474 22 9 -2.3347 0.2757 7.7452 23 6 -0.5478 -0.6858 5.9096 24 6 1.0790 -3.4782 -0.8167 25 6 2.1008 -3.7731 0.2842 26 1 -0.4850 0.8368 -0.0745 27 1 -0.1985 -3.3657 1.6082 28 1 -0.6290 -1.7525 0.9915 29 1 2.3079 -0.4659 4.1009 30 1 2.9830 0.7202 6.1500 31 1 -1.5565 -1.0705 5.8786 32 1 0.1563 -4.0586 -0.8161 33 1 1.4631 -3.2065 -1.8000 34 1 3.1566 -3.6955 0.0247 35 1 1.8507 -4.5475 1.0094 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808988659.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:07 Heat of formation + Delta-G solvation = -180.288499 kcal Electronic energy + Delta-G solvation = -25959.264859 eV Core-core repulsion = 21508.315792 eV Total energy + Delta-G solvation = -4450.949067 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.31489 -48.84418 -48.76575 -42.02871 -40.85122 -38.60668 -36.97486 -34.33890 -34.18949 -33.41810 -28.80587 -27.89872 -27.48427 -25.90200 -24.25345 -23.01597 -22.27521 -21.13838 -20.02583 -19.69017 -19.60762 -18.71800 -18.42794 -17.60388 -17.38550 -17.02298 -16.84913 -16.54331 -15.84961 -15.73501 -15.57580 -15.42269 -15.20593 -15.18962 -14.93029 -14.91947 -14.87090 -14.15656 -13.95485 -13.80342 -13.57865 -13.00201 -12.86038 -12.78438 -12.30568 -12.13662 -12.02886 -11.54788 -11.41214 -11.37277 -11.10362 -11.07627 -10.72529 -10.65895 -10.06472 -8.10173 -6.17168 -0.85180 -0.52468 1.18580 1.28928 1.41003 1.46911 1.56680 1.59509 2.27272 2.32105 2.42679 2.73724 2.99570 3.20574 3.30255 3.37438 3.51172 3.57968 3.66878 3.94764 4.17498 4.24334 4.33536 4.40630 4.57465 4.70214 4.76225 4.92845 4.94548 5.13259 5.18040 5.37495 5.51586 5.57596 5.81959 6.27327 6.33516 6.62511 6.81594 7.44414 8.91220 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.003871 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.996673 B = 7232.403770 C = 7915.132263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.035 3.965 3 Si 0.945 3.055 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.496 4.496 8 H 0.060 0.940 9 C 0.010 3.990 10 C 0.123 3.877 11 O -0.323 6.323 12 C 0.498 3.502 13 O -0.534 6.534 14 C -0.082 4.082 15 C -0.074 4.074 16 C 0.115 3.885 17 N -0.435 5.435 18 C 0.020 3.980 19 C 0.534 3.466 20 F -0.169 7.169 21 F -0.164 7.164 22 F -0.169 7.169 23 C -0.068 4.068 24 C -0.188 4.188 25 C -0.183 4.183 26 H 0.260 0.740 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.176 0.824 30 H 0.223 0.777 31 H 0.162 0.838 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 0.347 13.921 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.184 1.184 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.533 4.533 8 H 0.078 0.922 9 C 0.010 3.990 10 C 0.050 3.950 11 O -0.237 6.237 12 C 0.343 3.657 13 O -0.426 6.426 14 C -0.091 4.091 15 C -0.094 4.094 16 C -0.043 4.043 17 N -0.145 5.145 18 C -0.117 4.117 19 C 0.478 3.522 20 F -0.150 7.150 21 F -0.146 7.146 22 F -0.150 7.150 23 C -0.088 4.088 24 C -0.226 4.226 25 C -0.220 4.220 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.193 0.807 30 H 0.240 0.760 31 H 0.179 0.821 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.282 0.752 14.695 14.890 hybrid contribution -0.611 0.222 -1.094 1.273 sum 1.672 0.975 13.600 13.737 Atomic orbital electron populations 1.69958 1.07360 1.27330 1.50038 1.25552 0.95241 1.01887 0.93858 0.85707 0.79771 0.79913 0.77577 1.18397 1.21440 1.20315 1.20666 0.95135 0.90246 1.47254 0.92185 1.18998 0.95839 0.90200 0.93969 1.22646 0.97931 0.94514 0.79886 1.86490 1.41025 1.72979 1.23213 1.21314 0.83337 0.76953 0.84128 1.90767 1.21184 1.48398 1.82208 1.19533 0.96470 1.00911 0.92192 1.23148 0.94659 0.91303 1.00301 1.23547 1.00394 0.94210 0.86172 1.67135 1.01482 1.15068 1.30787 1.20815 0.94090 1.02557 0.94287 1.17581 0.78400 0.74604 0.81595 1.93245 1.95698 1.56069 1.69976 1.93229 1.92153 1.46688 1.82487 1.93239 1.36685 1.96043 1.89016 1.21913 1.01579 0.94570 0.90767 1.22981 0.99866 1.05025 0.94750 1.22994 0.96840 1.00319 1.01896 0.93024 0.94112 0.89946 0.80689 0.76039 0.82064 0.90224 0.90041 0.89436 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.69 10.93 21.45 0.23 -48.45 16 2 C 0.03 1.77 5.15 84.66 0.44 2.20 16 3 Si 0.94 39.88 29.56 68.60 2.03 41.91 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.50 -24.90 8.76 25.60 0.22 -24.67 16 8 H 0.06 2.99 7.86 -2.91 -0.02 2.97 16 9 C 0.01 0.48 2.10 -52.93 -0.11 0.37 16 10 C 0.12 5.71 4.61 71.98 0.33 6.04 16 11 O -0.32 -13.91 9.25 -55.79 -0.52 -14.43 16 12 C 0.50 19.62 7.92 70.42 0.56 20.18 16 13 O -0.53 -23.35 16.23 20.04 0.33 -23.02 16 14 C -0.08 -2.52 5.91 -19.89 -0.12 -2.64 16 15 C -0.07 -1.82 9.71 22.64 0.22 -1.60 16 16 C 0.12 2.25 11.17 84.67 0.95 3.20 16 17 N -0.44 -10.35 9.94 -184.05 -1.83 -12.18 16 18 C 0.02 0.51 6.29 42.55 0.27 0.78 16 19 C 0.53 12.56 3.43 71.24 0.24 12.81 16 20 F -0.17 -3.90 17.30 44.97 0.78 -3.12 16 21 F -0.16 -3.95 17.04 44.97 0.77 -3.18 16 22 F -0.17 -3.97 16.44 44.97 0.74 -3.23 16 23 C -0.07 -1.88 9.00 22.64 0.20 -1.68 16 24 C -0.19 -7.76 9.96 30.62 0.30 -7.46 16 25 C -0.18 -7.06 9.92 30.62 0.30 -6.76 16 26 H 0.26 13.52 8.32 -92.71 -0.77 12.75 16 27 H 0.04 1.77 8.05 -2.39 -0.02 1.75 16 28 H 0.08 4.35 6.08 -2.39 -0.01 4.33 16 29 H 0.18 4.10 7.71 -2.91 -0.02 4.08 16 30 H 0.22 2.33 8.06 -2.91 -0.02 2.30 16 31 H 0.16 4.34 7.29 -2.91 -0.02 4.32 16 32 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -59.39 327.87 7.49 -51.91 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.15 Total: 13.03 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 3.81 Total: 0.77 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -1.59 Total: -60.63 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.19 Total: -37.45 kcal Atomic # 9 Polarization: -11.81 SS G_CDS: 2.28 Total: -9.53 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -59.39 7.49 -51.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808988659.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.382 kcal (2) G-P(sol) polarization free energy of solvation -59.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds