Wall clock time and date at job start Tue Mar 31 2020 11:31:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31506 * 1
3 3 Si 1.86798 * 120.00447 * 2 1
4 4 H 1.48506 * 109.47405 * 180.02562 * 3 2 1
5 5 H 1.48497 * 109.46965 * 299.99942 * 3 2 1
6 6 H 1.48496 * 109.47347 * 59.99997 * 3 2 1
7 7 C 1.37883 * 119.99651 * 179.97438 * 2 1 3
8 8 H 1.08010 * 119.99930 * 165.70986 * 7 2 1
9 9 C 1.50692 * 120.00097 * 345.71314 * 7 2 1
10 10 C 1.53003 * 115.55034 * 324.65615 * 9 7 2
11 11 O 1.45194 * 109.47354 * 305.83038 * 10 9 7
12 12 C 1.34670 * 117.00402 * 179.32992 * 11 10 9
13 13 O 1.21437 * 119.99625 * 5.51525 * 12 11 10
14 14 C 1.48040 * 120.00455 * 185.51155 * 12 11 10
15 15 C 1.39876 * 120.92962 * 0.95131 * 14 12 11
16 16 C 1.38127 * 119.00076 * 180.02562 * 15 14 12
17 17 N 1.31819 * 120.90334 * 0.02562 * 16 15 14
18 18 C 1.31803 * 122.05794 * 359.70247 * 17 16 15
19 19 C 1.50698 * 119.54660 * 180.29392 * 18 17 16
20 20 F 1.39903 * 109.47186 * 270.28898 * 19 18 17
21 21 F 1.39899 * 109.47554 * 30.28999 * 19 18 17
22 22 F 1.39904 * 109.46890 * 150.28997 * 19 18 17
23 23 C 1.38169 * 120.89720 * 0.59021 * 18 17 16
24 24 C 1.52997 * 117.50415 * 110.33142 * 9 7 2
25 25 C 1.53001 * 117.49961 * 178.99338 * 9 7 2
26 26 H 0.97004 * 119.99587 * 5.08660 * 1 2 3
27 27 H 1.08997 * 109.47368 * 185.82287 * 10 9 7
28 28 H 1.09001 * 109.46812 * 65.82710 * 10 9 7
29 29 H 1.08003 * 120.49945 * 359.97438 * 15 14 12
30 30 H 1.08005 * 119.54573 * 179.97438 * 16 15 14
31 31 H 1.08000 * 120.49754 * 179.70612 * 23 18 17
32 32 H 1.09000 * 117.50554 * 215.00612 * 24 9 7
33 33 H 1.09002 * 117.49392 * 0.02562 * 24 9 7
34 34 H 1.08999 * 117.49926 * 359.97367 * 25 9 7
35 35 H 1.09000 * 117.50202 * 144.97303 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3462 -0.0006
5 1 1.8905 2.3963 -1.2125
6 1 1.8905 2.3964 1.2124
7 6 2.0044 -1.1941 0.0005
8 1 3.0594 -1.2088 -0.2303
9 6 1.2858 -2.4788 0.3232
10 6 0.1818 -2.3707 1.3769
11 8 0.7205 -1.7662 2.5821
12 6 -0.1317 -1.5857 3.6091
13 8 -1.2660 -2.0136 3.5392
14 6 0.3142 -0.8656 4.8233
15 6 1.6101 -0.3475 4.9167
16 6 1.9843 0.3170 6.0683
17 7 1.1396 0.4648 7.0695
18 6 -0.0916 -0.0030 7.0208
19 6 -1.0122 0.2039 8.1959
20 9 -0.8803 -0.8673 9.0860
21 9 -0.6763 1.3955 8.8474
22 9 -2.3347 0.2757 7.7452
23 6 -0.5478 -0.6858 5.9096
24 6 1.0790 -3.4782 -0.8167
25 6 2.1008 -3.7731 0.2842
26 1 -0.4850 0.8368 -0.0745
27 1 -0.1985 -3.3657 1.6082
28 1 -0.6290 -1.7525 0.9915
29 1 2.3079 -0.4659 4.1009
30 1 2.9830 0.7202 6.1500
31 1 -1.5565 -1.0705 5.8786
32 1 0.1563 -4.0586 -0.8161
33 1 1.4631 -3.2065 -1.8000
34 1 3.1566 -3.6955 0.0247
35 1 1.8507 -4.5475 1.0094
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000808988659.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:31:07
Heat of formation + Delta-G solvation = -180.288499 kcal
Electronic energy + Delta-G solvation = -25959.264859 eV
Core-core repulsion = 21508.315792 eV
Total energy + Delta-G solvation = -4450.949067 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.087 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-51.31489 -48.84418 -48.76575 -42.02871 -40.85122 -38.60668 -36.97486 -34.33890
-34.18949 -33.41810 -28.80587 -27.89872 -27.48427 -25.90200 -24.25345 -23.01597
-22.27521 -21.13838 -20.02583 -19.69017 -19.60762 -18.71800 -18.42794 -17.60388
-17.38550 -17.02298 -16.84913 -16.54331 -15.84961 -15.73501 -15.57580 -15.42269
-15.20593 -15.18962 -14.93029 -14.91947 -14.87090 -14.15656 -13.95485 -13.80342
-13.57865 -13.00201 -12.86038 -12.78438 -12.30568 -12.13662 -12.02886 -11.54788
-11.41214 -11.37277 -11.10362 -11.07627 -10.72529 -10.65895 -10.06472 -8.10173
-6.17168 -0.85180 -0.52468 1.18580 1.28928 1.41003 1.46911 1.56680
1.59509 2.27272 2.32105 2.42679 2.73724 2.99570 3.20574 3.30255
3.37438 3.51172 3.57968 3.66878 3.94764 4.17498 4.24334 4.33536
4.40630 4.57465 4.70214 4.76225 4.92845 4.94548 5.13259 5.18040
5.37495 5.51586 5.57596 5.81959 6.27327 6.33516 6.62511 6.81594
7.44414 8.91220
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.017729 B = 0.003871 C = 0.003537
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1578.996673 B = 7232.403770 C = 7915.132263
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.909 5.909
2 C 0.035 3.965
3 Si 0.945 3.055
4 H -0.260 1.260
5 H -0.288 1.288
6 H -0.278 1.278
7 C -0.496 4.496
8 H 0.060 0.940
9 C 0.010 3.990
10 C 0.123 3.877
11 O -0.323 6.323
12 C 0.498 3.502
13 O -0.534 6.534
14 C -0.082 4.082
15 C -0.074 4.074
16 C 0.115 3.885
17 N -0.435 5.435
18 C 0.020 3.980
19 C 0.534 3.466
20 F -0.169 7.169
21 F -0.164 7.164
22 F -0.169 7.169
23 C -0.068 4.068
24 C -0.188 4.188
25 C -0.183 4.183
26 H 0.260 0.740
27 H 0.041 0.959
28 H 0.083 0.917
29 H 0.176 0.824
30 H 0.223 0.777
31 H 0.162 0.838
32 H 0.079 0.921
33 H 0.081 0.919
34 H 0.087 0.913
35 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.516 0.347 13.921 14.150
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.165 4.165
3 Si 0.770 3.230
4 H -0.184 1.184
5 H -0.214 1.214
6 H -0.203 1.203
7 C -0.533 4.533
8 H 0.078 0.922
9 C 0.010 3.990
10 C 0.050 3.950
11 O -0.237 6.237
12 C 0.343 3.657
13 O -0.426 6.426
14 C -0.091 4.091
15 C -0.094 4.094
16 C -0.043 4.043
17 N -0.145 5.145
18 C -0.117 4.117
19 C 0.478 3.522
20 F -0.150 7.150
21 F -0.146 7.146
22 F -0.150 7.150
23 C -0.088 4.088
24 C -0.226 4.226
25 C -0.220 4.220
26 H 0.070 0.930
27 H 0.059 0.941
28 H 0.101 0.899
29 H 0.193 0.807
30 H 0.240 0.760
31 H 0.179 0.821
32 H 0.098 0.902
33 H 0.100 0.900
34 H 0.106 0.894
35 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 2.282 0.752 14.695 14.890
hybrid contribution -0.611 0.222 -1.094 1.273
sum 1.672 0.975 13.600 13.737
Atomic orbital electron populations
1.69958 1.07360 1.27330 1.50038 1.25552 0.95241 1.01887 0.93858
0.85707 0.79771 0.79913 0.77577 1.18397 1.21440 1.20315 1.20666
0.95135 0.90246 1.47254 0.92185 1.18998 0.95839 0.90200 0.93969
1.22646 0.97931 0.94514 0.79886 1.86490 1.41025 1.72979 1.23213
1.21314 0.83337 0.76953 0.84128 1.90767 1.21184 1.48398 1.82208
1.19533 0.96470 1.00911 0.92192 1.23148 0.94659 0.91303 1.00301
1.23547 1.00394 0.94210 0.86172 1.67135 1.01482 1.15068 1.30787
1.20815 0.94090 1.02557 0.94287 1.17581 0.78400 0.74604 0.81595
1.93245 1.95698 1.56069 1.69976 1.93229 1.92153 1.46688 1.82487
1.93239 1.36685 1.96043 1.89016 1.21913 1.01579 0.94570 0.90767
1.22981 0.99866 1.05025 0.94750 1.22994 0.96840 1.00319 1.01896
0.93024 0.94112 0.89946 0.80689 0.76039 0.82064 0.90224 0.90041
0.89436 0.89344
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -48.69 10.93 21.45 0.23 -48.45 16
2 C 0.03 1.77 5.15 84.66 0.44 2.20 16
3 Si 0.94 39.88 29.56 68.60 2.03 41.91 16
4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16
5 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16
6 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16
7 C -0.50 -24.90 8.76 25.60 0.22 -24.67 16
8 H 0.06 2.99 7.86 -2.91 -0.02 2.97 16
9 C 0.01 0.48 2.10 -52.93 -0.11 0.37 16
10 C 0.12 5.71 4.61 71.98 0.33 6.04 16
11 O -0.32 -13.91 9.25 -55.79 -0.52 -14.43 16
12 C 0.50 19.62 7.92 70.42 0.56 20.18 16
13 O -0.53 -23.35 16.23 20.04 0.33 -23.02 16
14 C -0.08 -2.52 5.91 -19.89 -0.12 -2.64 16
15 C -0.07 -1.82 9.71 22.64 0.22 -1.60 16
16 C 0.12 2.25 11.17 84.67 0.95 3.20 16
17 N -0.44 -10.35 9.94 -184.05 -1.83 -12.18 16
18 C 0.02 0.51 6.29 42.55 0.27 0.78 16
19 C 0.53 12.56 3.43 71.24 0.24 12.81 16
20 F -0.17 -3.90 17.30 44.97 0.78 -3.12 16
21 F -0.16 -3.95 17.04 44.97 0.77 -3.18 16
22 F -0.17 -3.97 16.44 44.97 0.74 -3.23 16
23 C -0.07 -1.88 9.00 22.64 0.20 -1.68 16
24 C -0.19 -7.76 9.96 30.62 0.30 -7.46 16
25 C -0.18 -7.06 9.92 30.62 0.30 -6.76 16
26 H 0.26 13.52 8.32 -92.71 -0.77 12.75 16
27 H 0.04 1.77 8.05 -2.39 -0.02 1.75 16
28 H 0.08 4.35 6.08 -2.39 -0.01 4.33 16
29 H 0.18 4.10 7.71 -2.91 -0.02 4.08 16
30 H 0.22 2.33 8.06 -2.91 -0.02 2.30 16
31 H 0.16 4.34 7.29 -2.91 -0.02 4.32 16
32 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16
33 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16
34 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16
35 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16
Total: -1.00 -59.39 327.87 7.49 -51.91
By element:
Atomic # 1 Polarization: 11.88 SS G_CDS: 1.15 Total: 13.03 kcal
Atomic # 6 Polarization: -3.04 SS G_CDS: 3.81 Total: 0.77 kcal
Atomic # 7 Polarization: -59.04 SS G_CDS: -1.59 Total: -60.63 kcal
Atomic # 8 Polarization: -37.26 SS G_CDS: -0.19 Total: -37.45 kcal
Atomic # 9 Polarization: -11.81 SS G_CDS: 2.28 Total: -9.53 kcal
Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal
Total: -59.39 7.49 -51.91 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000808988659.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -128.382 kcal
(2) G-P(sol) polarization free energy of solvation -59.392 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.486 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.906 kcal
(6) G-S(sol) free energy of system = (1) + (5) -180.288 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds