Wall clock time and date at job start Tue Mar 31 2020 11:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99492 * 2 1 4 4 H 1.48503 * 109.46713 * 273.43425 * 3 2 1 5 5 H 1.48495 * 109.47283 * 33.43470 * 3 2 1 6 6 H 1.48497 * 109.46965 * 153.43986 * 3 2 1 7 7 C 1.37877 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00227 * 353.98681 * 7 2 1 9 9 C 1.50697 * 119.99416 * 174.26181 * 7 2 1 10 10 C 1.52994 * 115.55468 * 294.50679 * 9 7 2 11 11 O 1.45206 * 109.47274 * 294.97223 * 10 9 7 12 12 C 1.34707 * 117.00401 * 183.80416 * 11 10 9 13 13 O 1.21473 * 119.99800 * 4.97462 * 12 11 10 14 14 C 1.47719 * 120.00156 * 184.96666 * 12 11 10 15 15 C 1.39613 * 120.56399 * 4.99386 * 14 12 11 16 16 N 1.31663 * 120.55237 * 179.70228 * 15 14 12 17 17 C 1.31950 * 121.88650 * 0.58676 * 16 15 14 18 18 C 1.38318 * 121.09881 * 359.69854 * 17 16 15 19 19 C 1.50700 * 120.35081 * 180.02562 * 18 17 16 20 20 F 1.39903 * 109.46931 * 269.98071 * 19 18 17 21 21 F 1.39898 * 109.46756 * 29.97933 * 19 18 17 22 22 F 1.39895 * 109.47111 * 149.97826 * 19 18 17 23 23 C 1.38391 * 119.30494 * 0.02562 * 18 17 16 24 24 C 1.53005 * 117.49569 * 148.83766 * 9 7 2 25 25 C 1.53000 * 117.50153 * 80.18267 * 9 7 2 26 26 H 0.96996 * 120.00466 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.47117 * 54.97004 * 10 9 7 28 28 H 1.08997 * 109.47810 * 174.97279 * 10 9 7 29 29 H 1.08002 * 119.72373 * 359.96942 * 15 14 12 30 30 H 1.08005 * 119.45187 * 179.68193 * 17 16 15 31 31 H 1.08000 * 120.85598 * 180.02562 * 23 18 17 32 32 H 1.09002 * 117.50037 * 359.97438 * 24 9 7 33 33 H 1.08998 * 117.49591 * 145.01712 * 24 9 7 34 34 H 1.09004 * 117.50153 * 214.97712 * 25 9 7 35 35 H 1.09008 * 117.49512 * 359.97041 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4239 2.0884 -1.3976 5 1 1.4847 2.6306 0.7714 6 1 3.5811 1.4205 0.6260 7 6 2.0046 -1.1940 0.0005 8 1 1.4691 -2.1267 0.0989 9 6 3.5059 -1.1972 -0.1300 10 6 4.0533 -0.6901 -1.4656 11 8 3.6452 -1.5905 -2.5292 12 6 4.1130 -1.3291 -3.7650 13 8 4.9129 -0.4306 -3.9342 14 6 3.6536 -2.1350 -4.9146 15 6 2.6587 -3.1009 -4.7520 16 7 2.2452 -3.8151 -5.7779 17 6 2.7537 -3.6598 -6.9855 18 6 3.7467 -2.7280 -7.2281 19 6 4.3151 -2.5643 -8.6142 20 9 5.4092 -3.4215 -8.7737 21 9 3.3341 -2.8791 -9.5606 22 9 4.7297 -1.2404 -8.7948 23 6 4.2129 -1.9476 -6.1846 24 6 4.2731 -2.3232 0.5662 25 6 4.3250 -0.9001 1.1277 26 1 -0.4850 0.8400 -0.0004 27 1 3.6613 0.3075 -1.6637 28 1 5.1417 -0.6506 -1.4208 29 1 2.2215 -3.2606 -3.7774 30 1 2.3886 -4.2705 -7.7980 31 1 4.9872 -1.2122 -6.3459 32 1 3.6920 -3.0614 1.1189 33 1 5.1680 -2.7024 0.0728 34 1 5.2541 -0.3437 1.0035 35 1 3.7779 -0.7019 2.0495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808989605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:41 Heat of formation + Delta-G solvation = -184.846505 kcal Electronic energy + Delta-G solvation = -25680.927489 eV Core-core repulsion = 21229.780773 eV Total energy + Delta-G solvation = -4451.146717 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.28570 -48.79765 -48.73750 -42.10289 -40.93072 -38.81353 -37.15982 -34.46359 -34.28328 -33.58275 -29.26832 -27.62249 -27.49718 -25.92210 -24.25323 -23.27509 -22.32950 -21.07889 -19.95458 -19.63889 -19.61114 -18.87251 -18.41219 -18.19480 -17.69028 -17.31017 -17.11112 -16.64567 -15.71845 -15.58052 -15.51320 -15.26932 -15.18305 -14.96860 -14.91000 -14.87791 -14.63324 -14.52952 -14.20654 -14.09860 -13.94383 -13.39670 -13.01229 -12.88635 -12.33510 -12.14524 -11.98838 -11.77754 -11.53670 -11.45286 -11.01210 -10.96023 -10.80723 -10.63287 -10.40119 -8.30611 -6.34743 -0.91076 -0.48483 1.17157 1.27757 1.29466 1.35962 1.45252 1.55339 2.26448 2.32643 2.47436 2.78762 2.94997 3.01513 3.24990 3.26272 3.34395 3.39441 3.54987 3.78670 3.93026 4.02792 4.12343 4.27562 4.40397 4.43742 4.56345 4.67277 4.89499 4.96599 5.02868 5.17913 5.38371 5.50027 5.65761 6.29888 6.36300 6.52419 6.71458 7.31757 8.84642 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.003329 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.436927 B = 8407.851099 C = 8476.507334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.028 3.972 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.216 1.216 7 C -0.474 4.474 8 H 0.039 0.961 9 C -0.043 4.043 10 C 0.110 3.890 11 O -0.332 6.332 12 C 0.508 3.492 13 O -0.531 6.531 14 C -0.186 4.186 15 C 0.198 3.802 16 N -0.494 5.494 17 C 0.194 3.806 18 C -0.252 4.252 19 C 0.530 3.470 20 F -0.172 7.172 21 F -0.167 7.167 22 F -0.177 7.177 23 C 0.041 3.959 24 C -0.155 4.155 25 C -0.169 4.169 26 H 0.265 0.735 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.184 0.816 30 H 0.209 0.791 31 H 0.167 0.833 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.712 -6.315 -15.991 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.171 4.171 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.138 1.138 7 C -0.512 4.512 8 H 0.058 0.942 9 C -0.044 4.044 10 C 0.037 3.963 11 O -0.247 6.247 12 C 0.353 3.647 13 O -0.423 6.423 14 C -0.189 4.189 15 C 0.041 3.959 16 N -0.202 5.202 17 C 0.037 3.963 18 C -0.256 4.256 19 C 0.475 3.525 20 F -0.153 7.153 21 F -0.148 7.148 22 F -0.158 7.158 23 C 0.015 3.985 24 C -0.192 4.192 25 C -0.206 4.206 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.201 0.799 30 H 0.226 0.774 31 H 0.185 0.815 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.152 -6.571 -15.859 19.944 hybrid contribution 0.500 1.805 -0.110 1.876 sum 10.652 -4.766 -15.969 19.778 Atomic orbital electron populations 1.70024 1.08090 1.27910 1.52199 1.25658 0.95084 1.02277 0.94036 0.86307 0.81989 0.79824 0.78279 1.21046 1.21720 1.13786 1.20364 0.89021 0.92946 1.48871 0.94231 1.19237 0.92977 1.03869 0.88310 1.22917 0.98371 0.90590 0.84463 1.86610 1.67857 1.53704 1.16543 1.21159 0.78064 0.81653 0.83848 1.90795 1.33533 1.31890 1.86066 1.20040 1.03968 1.02535 0.92396 1.23730 0.87659 0.85295 0.99171 1.68154 1.27064 1.25363 0.99603 1.23563 0.86807 0.90550 0.95369 1.21010 1.05436 1.05341 0.93770 1.17668 0.75907 0.73969 0.84940 1.93259 1.55435 1.70433 1.96164 1.93228 1.61956 1.92610 1.66977 1.93226 1.90675 1.35962 1.95938 1.21580 0.94336 0.93456 0.89116 1.22870 1.01460 0.91338 1.03552 1.23149 1.01048 0.99092 0.97319 0.92587 0.93726 0.90251 0.79906 0.77399 0.81504 0.89650 0.87868 0.88091 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 13.96 21.45 0.30 -56.90 16 2 C 0.03 1.54 5.47 84.65 0.46 2.00 16 3 Si 0.91 42.30 24.98 68.60 1.71 44.01 16 4 H -0.28 -13.31 7.03 99.48 0.70 -12.61 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.22 -8.77 5.72 99.48 0.57 -8.20 16 7 C -0.47 -25.58 9.33 25.60 0.24 -25.34 16 8 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 9 C -0.04 -1.84 1.06 -52.93 -0.06 -1.90 16 10 C 0.11 4.44 5.01 71.98 0.36 4.80 16 11 O -0.33 -12.96 9.45 -56.16 -0.53 -13.49 16 12 C 0.51 17.58 7.89 70.33 0.56 18.13 16 13 O -0.53 -19.99 16.15 19.92 0.32 -19.67 16 14 C -0.19 -5.10 5.89 -20.00 -0.12 -5.22 16 15 C 0.20 5.17 10.79 85.05 0.92 6.09 16 16 N -0.49 -11.41 10.34 -194.71 -2.01 -13.43 16 17 C 0.19 3.37 10.56 84.69 0.89 4.27 16 18 C -0.25 -4.61 5.46 -19.81 -0.11 -4.72 16 19 C 0.53 8.71 3.38 71.24 0.24 8.95 16 20 F -0.17 -2.90 17.30 44.97 0.78 -2.12 16 21 F -0.17 -2.52 16.48 44.97 0.74 -1.78 16 22 F -0.18 -3.28 16.53 44.97 0.74 -2.54 16 23 C 0.04 0.91 9.06 22.74 0.21 1.11 16 24 C -0.16 -5.50 9.96 30.62 0.30 -5.19 16 25 C -0.17 -6.12 8.01 30.62 0.25 -5.87 16 26 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.04 1.96 5.08 -2.38 -0.01 1.94 16 28 H 0.08 2.79 7.96 -2.39 -0.02 2.77 16 29 H 0.18 5.00 7.63 -2.91 -0.02 4.98 16 30 H 0.21 2.09 7.60 -2.91 -0.02 2.06 16 31 H 0.17 3.50 7.37 -2.91 -0.02 3.48 16 32 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 Total: -1.00 -65.10 321.46 7.20 -57.90 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.01 Total: 10.89 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 4.14 Total: -2.88 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -1.71 Total: -70.33 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.21 Total: -33.16 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 2.26 Total: -6.44 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.71 Total: 44.01 kcal Total: -65.10 7.20 -57.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808989605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.950 kcal (2) G-P(sol) polarization free energy of solvation -65.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds