Wall clock time and date at job start Tue Mar 31 2020 11:20:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31556 * 1
3 3 Si 1.86795 * 119.99959 * 2 1
4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1
5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1
6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1
7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3
8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1
9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1
10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2
11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7
12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9
13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10
14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11
15 15 O 1.45207 * 109.47029 * 270.02085 * 14 13 12
16 16 C 1.34864 * 116.99980 * 179.97438 * 15 14 13
17 17 O 1.21600 * 120.00180 * 0.02562 * 16 15 14
18 18 C 1.46667 * 120.00011 * 179.97438 * 16 15 14
19 19 C 1.36339 * 125.81199 * 179.72064 * 18 16 15
20 20 C 1.41523 * 106.97191 * 179.85334 * 19 18 16
21 21 C 1.46631 * 126.50564 * 180.15883 * 20 19 18
22 22 O 1.21327 * 119.99639 * 0.26661 * 21 20 19
23 23 C 1.38649 * 106.98621 * 0.40547 * 20 19 18
24 24 N 1.34084 * 108.36317 * 359.75075 * 23 20 19
25 25 H 0.97000 * 125.34802 * 180.02562 * 24 23 20
26 26 C 1.38297 * 120.14055 * 359.76875 * 13 12 11
27 27 C 1.38101 * 120.07230 * 359.97438 * 26 13 12
28 28 H 0.96996 * 120.00178 * 359.97438 * 1 2 3
29 29 H 1.07996 * 120.03745 * 0.02562 * 11 10 9
30 30 H 1.07996 * 119.96227 * 180.23396 * 12 11 10
31 31 H 1.09003 * 109.47622 * 30.01908 * 14 13 12
32 32 H 1.09004 * 109.47221 * 150.02459 * 14 13 12
33 33 H 1.07999 * 126.51245 * 0.02562 * 19 18 16
34 34 H 1.08000 * 120.00063 * 180.27794 * 21 20 19
35 35 H 1.08001 * 125.81596 * 179.77259 * 23 20 19
36 36 H 1.07999 * 119.96698 * 179.97438 * 26 13 12
37 37 H 1.07992 * 120.03608 * 179.97438 * 27 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2495 1.6177 0.0000
4 1 3.7095 1.3464 -0.0006
5 1 1.8908 2.3964 -1.2124
6 1 1.8908 2.3964 1.2126
7 6 2.0089 -1.2008 -0.0005
8 1 3.0889 -1.2007 -0.0010
9 8 1.3348 -2.3685 -0.0005
10 6 2.0700 -3.5046 -0.1076
11 6 1.4365 -4.7349 -0.2242
12 6 2.1874 -5.8885 -0.3378
13 6 3.5686 -5.8202 -0.3255
14 6 4.3848 -7.0815 -0.4440
15 8 4.6409 -7.6185 0.8806
16 6 5.3638 -8.7548 0.9514
17 8 5.7693 -9.2819 -0.0667
18 6 5.6619 -9.3543 2.2563
19 6 6.3741 -10.4980 2.4648
20 6 6.4218 -10.7057 3.8639
21 6 7.0856 -11.8129 4.5593
22 8 7.6722 -12.6637 3.9237
23 6 5.7171 -9.6665 4.4519
24 7 5.2645 -8.8603 3.4808
25 1 4.7403 -8.0558 3.6181
26 6 4.2024 -4.5970 -0.2043
27 6 3.4573 -3.4394 -0.0956
28 1 -0.4850 0.8400 0.0004
29 1 0.3579 -4.7892 -0.2301
30 1 1.6953 -6.8452 -0.4323
31 1 3.8358 -7.8156 -1.0337
32 1 5.3321 -6.8566 -0.9342
33 1 6.8197 -11.1248 1.7066
34 1 7.0521 -11.8711 5.6372
35 1 5.5598 -9.5295 5.5116
36 1 5.2812 -4.5470 -0.1945
37 1 3.9527 -2.4845 -0.0005
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000815250629.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:20:21
Heat of formation + Delta-G solvation = -99.298245 kcal
Electronic energy + Delta-G solvation = -23731.189262 eV
Core-core repulsion = 19825.608936 eV
Total energy + Delta-G solvation = -3905.580326 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.098 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-42.57981 -41.19908 -40.70423 -39.37805 -38.57853 -37.36990 -34.39094 -32.57168
-32.21881 -31.87307 -30.96266 -27.90659 -26.82073 -25.34517 -24.10944 -23.71895
-22.23328 -21.51308 -20.90007 -19.93438 -19.60026 -18.94218 -18.19646 -17.56961
-17.18833 -16.55503 -16.42732 -16.22109 -15.74581 -15.64634 -15.57637 -15.54987
-15.16053 -14.71598 -14.60370 -14.51235 -14.32669 -14.08553 -13.80384 -13.52424
-13.32294 -13.08241 -12.67561 -12.44107 -12.34370 -12.10664 -11.88269 -11.77596
-11.23143 -10.85078 -10.70247 -10.27157 -9.87466 -9.50960 -9.09900 -8.51081
-6.19418 0.12709 0.37713 0.51700 0.52379 1.35398 1.41123 1.53256
1.63021 1.84725 2.07042 2.15119 2.38960 2.79010 3.11218 3.42339
3.58408 3.74065 3.86822 3.87840 3.97106 4.11208 4.18102 4.25830
4.29361 4.49378 4.52275 4.71097 4.80135 4.95659 5.04278 5.09943
5.18861 5.23450 5.38312 5.47228 5.54950 5.63135 5.65354 5.98103
6.08210 6.31714 6.58796 6.77473 6.93616 7.71128 8.71655
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.025892 B = 0.002133 C = 0.002070
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1081.152309 B =13125.519031 C =13525.753286
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C -0.021 4.021
3 Si 1.019 2.981
4 H -0.251 1.251
5 H -0.270 1.270
6 H -0.268 1.268
7 C -0.414 4.414
8 H 0.105 0.895
9 O -0.225 6.225
10 C 0.127 3.873
11 C -0.205 4.205
12 C -0.040 4.040
13 C -0.182 4.182
14 C 0.132 3.868
15 O -0.355 6.355
16 C 0.533 3.467
17 O -0.535 6.535
18 C -0.074 4.074
19 C -0.057 4.057
20 C -0.322 4.322
21 C 0.419 3.581
22 O -0.532 6.532
23 C 0.154 3.846
24 N -0.505 5.505
25 H 0.443 0.557
26 C -0.041 4.041
27 C -0.244 4.244
28 H 0.274 0.726
29 H 0.120 0.880
30 H 0.149 0.851
31 H 0.085 0.915
32 H 0.083 0.917
33 H 0.136 0.864
34 H 0.164 0.836
35 H 0.252 0.748
36 H 0.140 0.860
37 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.313 -16.308 11.746 23.064
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.554 5.554
2 C -0.219 4.219
3 Si 0.838 3.162
4 H -0.174 1.174
5 H -0.195 1.195
6 H -0.193 1.193
7 C -0.490 4.490
8 H 0.122 0.878
9 O -0.131 6.131
10 C 0.076 3.924
11 C -0.224 4.224
12 C -0.058 4.058
13 C -0.182 4.182
14 C 0.060 3.940
15 O -0.272 6.272
16 C 0.380 3.620
17 O -0.425 6.425
18 C -0.182 4.182
19 C -0.083 4.083
20 C -0.328 4.328
21 C 0.283 3.717
22 O -0.409 6.409
23 C 0.008 3.992
24 N -0.100 5.100
25 H 0.284 0.716
26 C -0.060 4.060
27 C -0.264 4.264
28 H 0.083 0.917
29 H 0.138 0.862
30 H 0.167 0.833
31 H 0.104 0.896
32 H 0.101 0.899
33 H 0.154 0.846
34 H 0.180 0.820
35 H 0.268 0.732
36 H 0.158 0.842
37 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 11.204 -16.524 11.009 22.798
hybrid contribution -0.312 1.403 -0.645 1.576
sum 10.891 -15.121 10.364 21.323
Atomic orbital electron populations
1.70178 1.08024 1.28906 1.48333 1.26601 0.96849 1.02779 0.95697
0.84521 0.78303 0.74802 0.78558 1.17380 1.19507 1.19271 1.21889
0.92627 0.81241 1.53272 0.87794 1.83951 1.36048 1.12654 1.80455
1.20000 0.91595 0.87998 0.92812 1.20440 1.00231 0.90268 1.11466
1.20888 0.92862 0.97280 0.94722 1.19183 0.93430 0.93083 1.12541
1.21698 0.99612 0.92327 0.80368 1.86645 1.66007 1.38495 1.36039
1.20178 0.74908 0.78475 0.88443 1.90888 1.51966 1.62969 1.36720
1.18815 1.14506 1.01172 0.83709 1.21381 0.95759 0.93654 0.97471
1.21157 1.14244 1.04378 0.93066 1.23930 0.72256 0.79173 0.96378
1.90554 1.37360 1.39879 1.73147 1.23659 0.91558 0.87502 0.96505
1.41960 1.40251 1.23225 1.04552 0.71569 1.20946 0.99953 0.90777
0.94278 1.21240 0.93041 1.00007 1.12071 0.91712 0.86235 0.83331
0.89650 0.89914 0.84614 0.82039 0.73248 0.84176 0.85821
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.52 13.67 21.62 0.30 -54.23 16
2 C -0.02 -1.16 5.49 84.84 0.47 -0.69 16
3 Si 1.02 41.20 29.55 68.60 2.03 43.23 16
4 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16
5 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16
6 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16
7 C -0.41 -23.15 9.49 67.92 0.64 -22.50 16
8 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16
9 O -0.23 -12.98 9.76 -22.72 -0.22 -13.20 16
10 C 0.13 6.00 6.65 22.58 0.15 6.15 16
11 C -0.20 -8.16 9.99 22.39 0.22 -7.94 16
12 C -0.04 -1.24 9.69 22.25 0.22 -1.03 16
13 C -0.18 -5.43 5.52 -19.84 -0.11 -5.54 16
14 C 0.13 3.33 5.60 71.24 0.40 3.73 16
15 O -0.35 -8.76 10.22 -57.78 -0.59 -9.35 16
16 C 0.53 13.56 7.93 70.02 0.56 14.11 16
17 O -0.53 -16.72 16.65 19.51 0.32 -16.40 16
18 C -0.07 -1.47 7.02 39.95 0.28 -1.19 16
19 C -0.06 -1.19 10.37 22.64 0.23 -0.95 16
20 C -0.32 -4.10 6.13 -20.18 -0.12 -4.22 16
21 C 0.42 4.82 11.69 70.01 0.82 5.64 16
22 O -0.53 -12.42 17.74 -3.17 -0.06 -12.47 16
23 C 0.15 0.72 11.93 84.45 1.01 1.73 16
24 N -0.51 -5.32 6.00 -183.19 -1.10 -6.42 16
25 H 0.44 3.08 8.96 -92.71 -0.83 2.25 16
26 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16
27 C -0.24 -10.00 9.17 22.39 0.21 -9.79 16
28 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16
29 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16
30 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16
31 H 0.09 2.00 8.08 -2.39 -0.02 1.98 16
32 H 0.08 1.97 8.08 -2.39 -0.02 1.96 16
33 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16
34 H 0.16 -0.09 8.06 -2.91 -0.02 -0.11 16
35 H 0.25 -1.94 8.06 -2.91 -0.02 -1.96 16
36 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16
37 H 0.12 5.13 5.64 -2.91 -0.02 5.12 16
Total: -1.00 -82.94 343.89 6.17 -76.77
By element:
Atomic # 1 Polarization: 15.39 SS G_CDS: 0.31 Total: 15.70 kcal
Atomic # 6 Polarization: -28.81 SS G_CDS: 5.18 Total: -23.62 kcal
Atomic # 7 Polarization: -59.85 SS G_CDS: -0.80 Total: -60.65 kcal
Atomic # 8 Polarization: -50.88 SS G_CDS: -0.54 Total: -51.43 kcal
Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal
Total: -82.94 6.17 -76.77 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815250629.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.527 kcal
(2) G-P(sol) polarization free energy of solvation -82.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.469 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.171 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.771 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.298 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds