Wall clock time and date at job start Tue Mar 31 2020 11:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 O 1.45207 * 109.47029 * 270.02085 * 14 13 12 16 16 C 1.34864 * 116.99980 * 179.97438 * 15 14 13 17 17 O 1.21600 * 120.00180 * 0.02562 * 16 15 14 18 18 C 1.46667 * 120.00011 * 179.97438 * 16 15 14 19 19 C 1.36339 * 125.81199 * 179.72064 * 18 16 15 20 20 C 1.41523 * 106.97191 * 179.85334 * 19 18 16 21 21 C 1.46631 * 126.50564 * 180.15883 * 20 19 18 22 22 O 1.21327 * 119.99639 * 0.26661 * 21 20 19 23 23 C 1.38649 * 106.98621 * 0.40547 * 20 19 18 24 24 N 1.34084 * 108.36317 * 359.75075 * 23 20 19 25 25 H 0.97000 * 125.34802 * 180.02562 * 24 23 20 26 26 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 27 27 C 1.38101 * 120.07230 * 359.97438 * 26 13 12 28 28 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 31 31 H 1.09003 * 109.47622 * 30.01908 * 14 13 12 32 32 H 1.09004 * 109.47221 * 150.02459 * 14 13 12 33 33 H 1.07999 * 126.51245 * 0.02562 * 19 18 16 34 34 H 1.08000 * 120.00063 * 180.27794 * 21 20 19 35 35 H 1.08001 * 125.81596 * 179.77259 * 23 20 19 36 36 H 1.07999 * 119.96698 * 179.97438 * 26 13 12 37 37 H 1.07992 * 120.03608 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 8 4.6409 -7.6185 0.8806 16 6 5.3638 -8.7548 0.9514 17 8 5.7693 -9.2819 -0.0667 18 6 5.6619 -9.3543 2.2563 19 6 6.3741 -10.4980 2.4648 20 6 6.4218 -10.7057 3.8639 21 6 7.0856 -11.8129 4.5593 22 8 7.6722 -12.6637 3.9237 23 6 5.7171 -9.6665 4.4519 24 7 5.2645 -8.8603 3.4808 25 1 4.7403 -8.0558 3.6181 26 6 4.2024 -4.5970 -0.2043 27 6 3.4573 -3.4394 -0.0956 28 1 -0.4850 0.8400 0.0004 29 1 0.3579 -4.7892 -0.2301 30 1 1.6953 -6.8452 -0.4323 31 1 3.8358 -7.8156 -1.0337 32 1 5.3321 -6.8566 -0.9342 33 1 6.8197 -11.1248 1.7066 34 1 7.0521 -11.8711 5.6372 35 1 5.5598 -9.5295 5.5116 36 1 5.2812 -4.5470 -0.1945 37 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815250629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:21 Heat of formation + Delta-G solvation = -99.298245 kcal Electronic energy + Delta-G solvation = -23731.189262 eV Core-core repulsion = 19825.608936 eV Total energy + Delta-G solvation = -3905.580326 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.57981 -41.19908 -40.70423 -39.37805 -38.57853 -37.36990 -34.39094 -32.57168 -32.21881 -31.87307 -30.96266 -27.90659 -26.82073 -25.34517 -24.10944 -23.71895 -22.23328 -21.51308 -20.90007 -19.93438 -19.60026 -18.94218 -18.19646 -17.56961 -17.18833 -16.55503 -16.42732 -16.22109 -15.74581 -15.64634 -15.57637 -15.54987 -15.16053 -14.71598 -14.60370 -14.51235 -14.32669 -14.08553 -13.80384 -13.52424 -13.32294 -13.08241 -12.67561 -12.44107 -12.34370 -12.10664 -11.88269 -11.77596 -11.23143 -10.85078 -10.70247 -10.27157 -9.87466 -9.50960 -9.09900 -8.51081 -6.19418 0.12709 0.37713 0.51700 0.52379 1.35398 1.41123 1.53256 1.63021 1.84725 2.07042 2.15119 2.38960 2.79010 3.11218 3.42339 3.58408 3.74065 3.86822 3.87840 3.97106 4.11208 4.18102 4.25830 4.29361 4.49378 4.52275 4.71097 4.80135 4.95659 5.04278 5.09943 5.18861 5.23450 5.38312 5.47228 5.54950 5.63135 5.65354 5.98103 6.08210 6.31714 6.58796 6.77473 6.93616 7.71128 8.71655 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.002133 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.152309 B =13125.519031 C =13525.753286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 1.019 2.981 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.105 0.895 9 O -0.225 6.225 10 C 0.127 3.873 11 C -0.205 4.205 12 C -0.040 4.040 13 C -0.182 4.182 14 C 0.132 3.868 15 O -0.355 6.355 16 C 0.533 3.467 17 O -0.535 6.535 18 C -0.074 4.074 19 C -0.057 4.057 20 C -0.322 4.322 21 C 0.419 3.581 22 O -0.532 6.532 23 C 0.154 3.846 24 N -0.505 5.505 25 H 0.443 0.557 26 C -0.041 4.041 27 C -0.244 4.244 28 H 0.274 0.726 29 H 0.120 0.880 30 H 0.149 0.851 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.164 0.836 35 H 0.252 0.748 36 H 0.140 0.860 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.313 -16.308 11.746 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.122 0.878 9 O -0.131 6.131 10 C 0.076 3.924 11 C -0.224 4.224 12 C -0.058 4.058 13 C -0.182 4.182 14 C 0.060 3.940 15 O -0.272 6.272 16 C 0.380 3.620 17 O -0.425 6.425 18 C -0.182 4.182 19 C -0.083 4.083 20 C -0.328 4.328 21 C 0.283 3.717 22 O -0.409 6.409 23 C 0.008 3.992 24 N -0.100 5.100 25 H 0.284 0.716 26 C -0.060 4.060 27 C -0.264 4.264 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.167 0.833 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.180 0.820 35 H 0.268 0.732 36 H 0.158 0.842 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.204 -16.524 11.009 22.798 hybrid contribution -0.312 1.403 -0.645 1.576 sum 10.891 -15.121 10.364 21.323 Atomic orbital electron populations 1.70178 1.08024 1.28906 1.48333 1.26601 0.96849 1.02779 0.95697 0.84521 0.78303 0.74802 0.78558 1.17380 1.19507 1.19271 1.21889 0.92627 0.81241 1.53272 0.87794 1.83951 1.36048 1.12654 1.80455 1.20000 0.91595 0.87998 0.92812 1.20440 1.00231 0.90268 1.11466 1.20888 0.92862 0.97280 0.94722 1.19183 0.93430 0.93083 1.12541 1.21698 0.99612 0.92327 0.80368 1.86645 1.66007 1.38495 1.36039 1.20178 0.74908 0.78475 0.88443 1.90888 1.51966 1.62969 1.36720 1.18815 1.14506 1.01172 0.83709 1.21381 0.95759 0.93654 0.97471 1.21157 1.14244 1.04378 0.93066 1.23930 0.72256 0.79173 0.96378 1.90554 1.37360 1.39879 1.73147 1.23659 0.91558 0.87502 0.96505 1.41960 1.40251 1.23225 1.04552 0.71569 1.20946 0.99953 0.90777 0.94278 1.21240 0.93041 1.00007 1.12071 0.91712 0.86235 0.83331 0.89650 0.89914 0.84614 0.82039 0.73248 0.84176 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.52 13.67 21.62 0.30 -54.23 16 2 C -0.02 -1.16 5.49 84.84 0.47 -0.69 16 3 Si 1.02 41.20 29.55 68.60 2.03 43.23 16 4 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 6 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.41 -23.15 9.49 67.92 0.64 -22.50 16 8 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 9 O -0.23 -12.98 9.76 -22.72 -0.22 -13.20 16 10 C 0.13 6.00 6.65 22.58 0.15 6.15 16 11 C -0.20 -8.16 9.99 22.39 0.22 -7.94 16 12 C -0.04 -1.24 9.69 22.25 0.22 -1.03 16 13 C -0.18 -5.43 5.52 -19.84 -0.11 -5.54 16 14 C 0.13 3.33 5.60 71.24 0.40 3.73 16 15 O -0.35 -8.76 10.22 -57.78 -0.59 -9.35 16 16 C 0.53 13.56 7.93 70.02 0.56 14.11 16 17 O -0.53 -16.72 16.65 19.51 0.32 -16.40 16 18 C -0.07 -1.47 7.02 39.95 0.28 -1.19 16 19 C -0.06 -1.19 10.37 22.64 0.23 -0.95 16 20 C -0.32 -4.10 6.13 -20.18 -0.12 -4.22 16 21 C 0.42 4.82 11.69 70.01 0.82 5.64 16 22 O -0.53 -12.42 17.74 -3.17 -0.06 -12.47 16 23 C 0.15 0.72 11.93 84.45 1.01 1.73 16 24 N -0.51 -5.32 6.00 -183.19 -1.10 -6.42 16 25 H 0.44 3.08 8.96 -92.71 -0.83 2.25 16 26 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16 27 C -0.24 -10.00 9.17 22.39 0.21 -9.79 16 28 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.09 2.00 8.08 -2.39 -0.02 1.98 16 32 H 0.08 1.97 8.08 -2.39 -0.02 1.96 16 33 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.16 -0.09 8.06 -2.91 -0.02 -0.11 16 35 H 0.25 -1.94 8.06 -2.91 -0.02 -1.96 16 36 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 37 H 0.12 5.13 5.64 -2.91 -0.02 5.12 16 Total: -1.00 -82.94 343.89 6.17 -76.77 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.31 Total: 15.70 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 5.18 Total: -23.62 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.80 Total: -60.65 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.54 Total: -51.43 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -82.94 6.17 -76.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815250629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.527 kcal (2) G-P(sol) polarization free energy of solvation -82.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds