Wall clock time and date at job start Tue Mar 31 2020 11:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42104 * 108.57785 * 2 1 4 4 O 1.42100 * 108.58273 * 228.97180 * 2 1 3 5 5 C 1.81404 * 101.92278 * 114.48394 * 2 1 3 6 6 C 1.53002 * 109.47340 * 179.97438 * 5 2 1 7 7 N 1.46502 * 109.46867 * 180.02562 * 6 5 2 8 8 C 1.40000 * 119.99414 * 179.97438 * 7 6 5 9 9 C 1.38641 * 120.10373 * 0.02562 * 8 7 6 10 10 C 1.38284 * 120.00818 * 179.97438 * 9 8 7 11 11 C 1.38275 * 120.20418 * 359.97438 * 10 9 8 12 12 C 1.38247 * 120.19312 * 0.02562 * 11 10 9 13 13 C 1.38724 * 119.99820 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.10569 * 179.97438 * 13 12 11 15 15 C 1.81406 * 102.99596 * 359.97438 * 14 13 12 16 16 C 1.50701 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00074 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99904 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99958 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47040 * 90.00279 * 20 18 16 22 22 H 1.48499 * 109.46766 * 209.99903 * 20 18 16 23 23 H 1.48497 * 109.46987 * 330.00016 * 20 18 16 24 24 H 1.09004 * 109.47183 * 305.51304 * 1 2 3 25 25 H 1.09001 * 109.47114 * 65.51342 * 1 2 3 26 26 H 1.09002 * 109.46885 * 185.51544 * 1 2 3 27 27 H 1.09003 * 109.46755 * 59.99946 * 5 2 1 28 28 H 1.09004 * 109.46989 * 300.00548 * 5 2 1 29 29 H 1.08999 * 109.46712 * 60.00454 * 6 5 2 30 30 H 1.08999 * 109.47173 * 300.00118 * 6 5 2 31 31 H 0.97001 * 120.00343 * 0.02562 * 7 6 5 32 32 H 1.07997 * 119.99368 * 359.95163 * 9 8 7 33 33 H 1.08004 * 119.90252 * 180.02562 * 10 9 8 34 34 H 1.07996 * 119.90390 * 179.74422 * 11 10 9 35 35 H 1.08007 * 120.00130 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.47274 * 300.00167 * 15 14 13 37 37 H 1.09004 * 109.46798 * 60.00268 * 15 14 13 38 38 H 0.96996 * 119.99847 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8195 1.7980 7 7 4.0080 -1.4141 3.1023 8 6 5.3389 -1.5953 3.4971 9 6 6.3721 -1.2122 2.6558 10 6 7.6860 -1.3915 3.0480 11 6 7.9743 -1.9520 4.2787 12 6 6.9505 -2.3370 5.1243 13 6 5.6295 -2.1619 4.7387 14 16 4.3225 -2.6522 5.8139 15 6 5.2054 -3.3095 7.2558 16 6 4.2087 -3.7791 8.2840 17 1 3.1500 -3.6904 8.0896 18 6 4.6482 -4.3208 9.4732 19 7 3.7783 -4.7310 10.3702 20 14 6.4793 -4.4720 9.8103 21 1 6.9628 -3.2383 10.4806 22 1 6.7255 -5.6425 10.6905 23 1 7.2051 -4.6557 8.5279 24 1 -0.3634 0.5970 0.8365 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0988 27 1 1.7610 -1.7369 1.6665 28 1 1.7609 -0.1170 2.4043 29 1 4.1335 0.1816 1.7466 30 1 4.1328 -1.4384 1.0090 31 1 3.2863 -1.6830 3.6919 32 1 6.1508 -0.7740 1.6938 33 1 8.4896 -1.0921 2.3914 34 1 9.0021 -2.0936 4.5784 35 1 7.1792 -2.7741 6.0851 36 1 5.8312 -4.1472 6.9479 37 1 5.8310 -2.5276 7.6863 38 1 4.0876 -5.1117 11.2070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819439584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:42 Heat of formation + Delta-G solvation = -70.851037 kcal Electronic energy + Delta-G solvation = -20856.466182 eV Core-core repulsion = 17530.316242 eV Total energy + Delta-G solvation = -3326.149940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.28998 -38.01628 -37.21109 -36.96650 -35.27876 -32.84065 -32.21245 -31.23483 -30.38009 -29.05587 -25.27964 -24.60970 -23.42951 -22.23551 -19.87347 -19.37800 -18.64790 -17.81708 -17.58967 -17.23851 -16.95113 -16.72133 -16.32377 -15.98748 -15.70837 -15.07684 -14.93901 -14.85883 -14.77021 -14.35702 -14.12596 -13.98284 -13.90280 -13.24330 -13.15609 -13.05413 -13.04628 -12.90667 -12.71627 -12.48859 -12.18265 -12.07489 -11.94668 -11.66905 -11.56792 -11.08997 -10.96719 -10.90962 -10.50121 -8.88648 -8.42372 -7.92654 -6.52655 -0.98205 0.37181 0.64587 0.80340 1.31579 1.32770 1.43036 1.80793 1.83783 2.25286 2.38590 2.80434 2.87832 2.90864 3.11765 3.46037 3.81451 3.91413 4.13544 4.19646 4.26419 4.29599 4.45830 4.51071 4.54202 4.58166 4.63525 4.64940 4.81434 4.96542 5.01617 5.20701 5.27109 5.44559 5.67019 5.88963 6.00507 6.32130 6.50525 6.65090 7.10607 8.72975 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.018541 B = 0.003016 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.778853 B = 9280.554982 C =10599.597539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.445 3.555 3 O -0.980 6.980 4 O -0.980 6.980 5 C -0.630 4.630 6 C 0.127 3.873 7 N -0.741 5.741 8 C 0.217 3.783 9 C -0.190 4.190 10 C -0.076 4.076 11 C -0.162 4.162 12 C -0.109 4.109 13 C -0.172 4.172 14 S -0.156 6.156 15 C 0.040 3.960 16 C -0.532 4.532 17 H 0.043 0.957 18 C 0.026 3.974 19 N -0.934 5.934 20 Si 0.946 3.054 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.247 1.247 24 H 0.153 0.847 25 H 0.141 0.859 26 H 0.153 0.847 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.404 0.596 32 H 0.145 0.855 33 H 0.156 0.844 34 H 0.141 0.859 35 H 0.111 0.889 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.202 9.874 -21.654 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.630 3.370 3 O -0.977 6.977 4 O -0.977 6.977 5 C -0.758 4.758 6 C 0.002 3.998 7 N -0.374 5.374 8 C 0.108 3.892 9 C -0.214 4.214 10 C -0.097 4.097 11 C -0.183 4.183 12 C -0.134 4.134 13 C -0.289 4.289 14 S 0.087 5.913 15 C -0.108 4.108 16 C -0.571 4.571 17 H 0.061 0.939 18 C -0.175 4.175 19 N -0.573 5.573 20 Si 0.768 3.232 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.171 1.171 24 H 0.171 0.829 25 H 0.160 0.840 26 H 0.171 0.829 27 H 0.178 0.822 28 H 0.178 0.822 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.240 0.760 32 H 0.163 0.837 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.129 0.871 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.909 10.211 -22.400 24.692 hybrid contribution 0.853 -0.848 1.895 2.245 sum -1.056 9.363 -20.505 22.566 Atomic orbital electron populations 1.30085 1.21073 1.14043 1.13646 1.06917 0.80082 0.73932 0.76090 1.93564 1.81191 1.36238 1.86699 1.93563 1.81186 1.67709 1.55230 1.30654 1.03335 1.16805 1.24979 1.21101 0.92827 0.99562 0.86316 1.44745 1.03699 1.69463 1.19490 1.17500 0.86097 0.94565 0.91034 1.20886 0.91942 1.07787 1.00812 1.21271 0.96285 0.96350 0.95801 1.21104 0.98940 1.03022 0.95242 1.21158 0.91708 1.00372 1.00145 1.21512 0.97455 1.11285 0.98603 1.84746 1.13672 1.76836 1.16018 1.21393 0.97798 0.98319 0.93264 1.20597 0.93056 1.42494 1.00925 0.93876 1.25796 1.03341 0.93506 0.94865 1.69992 1.36789 1.41758 1.08762 0.85727 0.79003 0.78921 0.79583 1.18566 1.19970 1.17094 0.82900 0.84030 0.82902 0.82170 0.82161 0.90414 0.90427 0.75958 0.83717 0.82620 0.84088 0.87144 0.93929 0.94091 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.53 10.62 113.37 1.20 -0.32 16 2 S 2.44 26.69 5.36 -56.49 -0.30 26.38 16 3 O -0.98 -18.96 18.10 -127.37 -2.31 -21.27 16 4 O -0.98 -18.96 18.10 -127.37 -2.31 -21.27 16 5 C -0.63 -6.44 5.92 71.98 0.43 -6.02 16 6 C 0.13 2.32 4.93 86.38 0.43 2.75 16 7 N -0.74 -19.00 5.68 -338.82 -1.93 -20.92 16 8 C 0.22 6.59 6.66 38.25 0.25 6.84 16 9 C -0.19 -4.79 9.31 22.38 0.21 -4.58 16 10 C -0.08 -1.77 10.04 22.29 0.22 -1.54 16 11 C -0.16 -4.35 10.04 22.28 0.22 -4.13 16 12 C -0.11 -3.74 9.36 22.39 0.21 -3.53 16 13 C -0.17 -6.21 6.12 22.70 0.14 -6.08 16 14 S -0.16 -6.53 20.37 -56.49 -1.15 -7.68 16 15 C 0.04 1.94 3.16 71.24 0.23 2.17 16 16 C -0.53 -30.58 9.68 25.60 0.25 -30.33 16 17 H 0.04 2.75 7.96 -2.91 -0.02 2.73 16 18 C 0.03 1.47 5.47 84.65 0.46 1.94 16 19 N -0.93 -56.84 13.96 21.45 0.30 -56.54 16 20 Si 0.95 42.49 27.47 68.60 1.88 44.37 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 24 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.36 7.95 -2.39 -0.02 1.34 16 30 H 0.08 1.36 7.95 -2.39 -0.02 1.34 16 31 H 0.40 10.69 7.02 -92.71 -0.65 10.04 16 32 H 0.15 2.87 6.74 -2.91 -0.02 2.85 16 33 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.11 3.99 5.88 -2.91 -0.02 3.97 16 36 H 0.04 2.01 6.81 -2.39 -0.02 2.00 16 37 H 0.04 1.91 7.17 -2.39 -0.02 1.90 16 38 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -82.05 343.71 -1.19 -83.23 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.37 Total: 16.53 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 4.25 Total: -42.84 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -1.63 Total: -77.46 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -4.61 Total: -42.54 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.37 kcal Atomic # 16 Polarization: 20.16 SS G_CDS: -1.45 Total: 18.71 kcal Total: -82.05 -1.19 -83.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819439584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.383 kcal (2) G-P(sol) polarization free energy of solvation -82.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds