Wall clock time and date at job start Tue Mar 31 2020 11:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48497 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47333 * 300.00272 * 3 2 1 6 6 H 1.48497 * 109.47089 * 60.00036 * 3 2 1 7 7 C 1.38692 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00455 * 179.97438 * 7 2 1 9 9 O 1.34816 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.35519 * 117.00141 * 185.43291 * 9 7 2 11 11 C 1.38835 * 120.16123 * 5.72926 * 10 9 7 12 12 C 1.38026 * 120.06956 * 179.97438 * 11 10 9 13 13 C 1.38575 * 120.40377 * 0.02562 * 12 11 10 14 14 C 1.37824 * 120.32163 * 359.95735 * 13 12 11 15 15 C 1.39661 * 119.92345 * 0.04369 * 14 13 12 16 16 C 1.47531 * 120.19989 * 180.25126 * 15 14 13 17 17 O 1.21594 * 120.00270 * 204.86489 * 16 15 14 18 18 N 1.34776 * 119.99998 * 24.86380 * 16 15 14 19 19 C 1.47068 * 136.05714 * 355.03603 * 18 16 15 20 20 C 1.53751 * 87.89040 * 152.95979 * 19 18 16 21 21 C 1.53004 * 114.09057 * 139.77724 * 20 19 18 22 22 F 1.39904 * 109.46725 * 326.56426 * 21 20 19 23 23 F 1.39893 * 109.47014 * 86.55900 * 21 20 19 24 24 F 1.39899 * 109.47417 * 206.56694 * 21 20 19 25 25 C 1.47070 * 136.05895 * 175.40222 * 18 16 15 26 26 H 0.96999 * 119.99795 * 359.97438 * 1 2 3 27 27 H 1.07992 * 119.96159 * 359.95224 * 11 10 9 28 28 H 1.08005 * 119.79769 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.83575 * 179.97438 * 13 12 11 30 30 H 1.08001 * 120.03635 * 180.02562 * 14 13 12 31 31 H 1.09003 * 113.46521 * 267.69757 * 19 18 16 32 32 H 1.08994 * 113.46761 * 38.12991 * 19 18 16 33 33 H 1.08999 * 114.39743 * 272.67952 * 20 19 18 34 34 H 1.08997 * 113.46624 * 321.86744 * 25 18 16 35 35 H 1.08998 * 113.46350 * 92.24677 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0087 -1.2011 -0.0005 8 1 3.0888 -1.2011 -0.0010 9 8 1.3347 -2.3687 -0.0005 10 6 2.0682 -3.5025 0.1132 11 6 3.4355 -3.4287 0.3422 12 6 4.1806 -4.5848 0.4583 13 6 3.5727 -5.8251 0.3472 14 6 2.2164 -5.9174 0.1203 15 6 1.4495 -4.7564 0.0006 16 6 -0.0037 -4.8482 -0.2368 17 8 -0.5907 -3.9304 -0.7769 18 7 -0.6807 -5.9492 0.1450 19 6 -0.3359 -7.2576 0.7213 20 6 -1.7412 -7.2901 1.3440 21 6 -2.4155 -8.6626 1.2926 22 9 -2.0255 -9.3303 0.1266 23 9 -2.0324 -9.4125 2.4097 24 9 -3.8050 -8.5000 1.2942 25 6 -2.0887 -6.3736 0.1627 26 1 -0.4850 0.8401 0.0004 27 1 3.9166 -2.4658 0.4292 28 1 5.2440 -4.5223 0.6368 29 1 4.1646 -6.7238 0.4392 30 1 1.7473 -6.8865 0.0349 31 1 -0.1748 -8.0330 -0.0277 32 1 0.4659 -7.2096 1.4581 33 1 -1.8129 -6.8087 2.3192 34 1 -2.7803 -5.5725 0.4235 35 1 -2.3901 -6.9151 -0.7340 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829149444.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:37 Heat of formation + Delta-G solvation = -137.565199 kcal Electronic energy + Delta-G solvation = -26062.721751 eV Core-core repulsion = 21613.625305 eV Total energy + Delta-G solvation = -4449.096446 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.31186 -47.82560 -47.78024 -40.38025 -39.03743 -37.07120 -36.41272 -32.41182 -31.40378 -29.94335 -29.00988 -26.32384 -26.12131 -25.36134 -23.00505 -21.62483 -21.25741 -19.33874 -18.64661 -18.58243 -18.14743 -17.93160 -17.15338 -16.43553 -15.54179 -15.10091 -14.71136 -14.69564 -14.64359 -14.27001 -14.22675 -14.06549 -14.00772 -13.93650 -13.89222 -13.66903 -13.37647 -12.83959 -12.68874 -12.67288 -12.33832 -11.79146 -11.74700 -11.42579 -11.29913 -11.01451 -10.95102 -10.72840 -10.47381 -9.68059 -9.10174 -8.93091 -8.55017 -8.34951 -7.38915 -6.51842 -4.11183 1.64904 2.24346 2.40616 2.98672 3.08644 3.09048 3.15277 3.34302 3.46453 3.72644 3.82327 3.88594 4.36775 4.45399 4.50105 4.84716 4.98783 5.03910 5.07750 5.19941 5.26993 5.45798 5.53226 5.62543 5.70564 5.83712 6.06893 6.11235 6.49543 6.63866 6.87025 6.99728 7.18332 7.22944 7.62020 7.85915 7.97603 8.81892 8.89703 9.58779 10.62881 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.019229 B = 0.003587 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.792103 B = 7804.378249 C = 8901.307019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.400 4.400 8 H 0.096 0.904 9 O -0.132 6.132 10 C 0.190 3.810 11 C -0.235 4.235 12 C -0.050 4.050 13 C -0.229 4.229 14 C -0.042 4.042 15 C -0.222 4.222 16 C 0.596 3.404 17 O -0.496 6.496 18 N -0.650 5.650 19 C 0.112 3.888 20 C -0.189 4.189 21 C 0.467 3.533 22 F -0.180 7.180 23 F -0.181 7.181 24 F -0.180 7.180 25 C 0.123 3.877 26 H 0.272 0.728 27 H 0.133 0.867 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.148 0.852 34 H 0.094 0.906 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -15.902 3.706 16.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.113 0.887 9 O -0.031 6.031 10 C 0.130 3.870 11 C -0.255 4.255 12 C -0.068 4.068 13 C -0.248 4.248 14 C -0.061 4.061 15 C -0.227 4.227 16 C 0.389 3.611 17 O -0.368 6.368 18 N -0.389 5.389 19 C -0.012 4.012 20 C -0.209 4.209 21 C 0.412 3.588 22 F -0.162 7.162 23 F -0.162 7.162 24 F -0.161 7.161 25 C -0.001 4.001 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.166 0.834 34 H 0.112 0.888 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.127 -14.894 3.275 15.291 hybrid contribution 0.418 0.406 0.085 0.589 sum -0.709 -14.488 3.359 14.889 Atomic orbital electron populations 1.70108 1.06062 1.27825 1.42842 1.25399 0.95832 0.99050 0.96065 0.85627 0.79185 0.80085 0.78409 1.18910 1.19935 1.19983 1.21529 0.91950 0.80886 1.53248 0.88707 1.84117 1.33861 1.11235 1.73890 1.19240 0.90049 0.87045 0.90624 1.21154 0.93754 0.99372 1.11189 1.20923 0.98601 0.92275 0.95029 1.20485 0.94558 0.97002 1.12773 1.20942 0.93960 0.95824 0.95370 1.18610 0.91740 0.91980 1.20325 1.17830 0.86542 0.79388 0.77354 1.90925 1.69437 1.36153 1.40333 1.49372 1.08243 1.14401 1.66917 1.23060 0.94536 0.86652 0.96972 1.24611 0.99823 0.91795 1.04687 1.20176 0.77121 0.87985 0.73486 1.93176 1.90684 1.82826 1.49482 1.93197 1.90923 1.79083 1.53028 1.93203 1.31055 1.95699 1.96170 1.22701 0.86665 0.96005 0.94718 0.91792 0.84942 0.87060 0.87134 0.86630 0.88565 0.88467 0.83376 0.88789 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.92 13.67 55.48 0.76 -24.16 16 2 C 0.04 1.21 5.49 -17.52 -0.10 1.12 16 3 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.40 -11.18 9.44 30.90 0.29 -10.88 16 8 H 0.10 2.40 5.30 -52.48 -0.28 2.12 16 9 O -0.13 -3.86 8.14 -19.32 -0.16 -4.01 16 10 C 0.19 4.63 6.63 -38.60 -0.26 4.37 16 11 C -0.24 -4.94 9.13 -39.44 -0.36 -5.30 16 12 C -0.05 -0.85 10.03 -39.53 -0.40 -1.25 16 13 C -0.23 -3.64 10.02 -39.61 -0.40 -4.03 16 14 C -0.04 -0.71 8.74 -39.20 -0.34 -1.06 16 15 C -0.22 -4.76 5.86 -104.81 -0.61 -5.37 16 16 C 0.60 13.06 7.78 -12.47 -0.10 12.97 16 17 O -0.50 -13.51 16.36 -14.83 -0.24 -13.75 16 18 N -0.65 -10.42 3.68 -186.29 -0.68 -11.11 16 19 C 0.11 1.22 5.67 -8.37 -0.05 1.17 16 20 C -0.19 -1.84 4.19 -89.97 -0.38 -2.22 16 21 C 0.47 4.38 3.08 37.16 0.11 4.50 16 22 F -0.18 -1.76 15.70 2.25 0.04 -1.72 16 23 F -0.18 -1.75 17.32 2.25 0.04 -1.71 16 24 F -0.18 -1.82 17.19 2.25 0.04 -1.79 16 25 C 0.12 1.53 8.00 -8.50 -0.07 1.46 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.13 2.75 5.71 -52.49 -0.30 2.45 16 28 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 29 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.12 1.55 5.36 -52.49 -0.28 1.26 16 31 H 0.10 0.89 7.06 -51.93 -0.37 0.53 16 32 H 0.10 0.98 7.06 -51.93 -0.37 0.61 16 33 H 0.15 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16 LS Contribution 316.09 15.07 4.76 4.76 Total: -1.00 -34.21 316.09 -5.95 -40.15 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -2.83 Total: 2.62 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.65 Total: -4.52 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.07 Total: -35.27 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.40 Total: -17.76 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.11 Total: -5.22 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.21 -5.95 -40.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829149444.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.411 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds