Wall clock time and date at job start Tue Mar 31 2020 11:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48497 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47333 * 300.00272 * 3 2 1 6 6 H 1.48497 * 109.47089 * 60.00036 * 3 2 1 7 7 C 1.38692 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00455 * 179.97438 * 7 2 1 9 9 O 1.34816 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.35519 * 117.00141 * 185.43291 * 9 7 2 11 11 C 1.38835 * 120.16123 * 5.72926 * 10 9 7 12 12 C 1.38026 * 120.06956 * 179.97438 * 11 10 9 13 13 C 1.38575 * 120.40377 * 0.02562 * 12 11 10 14 14 C 1.37824 * 120.32163 * 359.95735 * 13 12 11 15 15 C 1.39661 * 119.92345 * 0.04369 * 14 13 12 16 16 C 1.47531 * 120.19989 * 180.25126 * 15 14 13 17 17 O 1.21594 * 120.00270 * 204.86489 * 16 15 14 18 18 N 1.34776 * 119.99998 * 24.86380 * 16 15 14 19 19 C 1.47068 * 136.05714 * 355.03603 * 18 16 15 20 20 C 1.53751 * 87.89040 * 152.95979 * 19 18 16 21 21 C 1.53004 * 114.09057 * 139.77724 * 20 19 18 22 22 F 1.39904 * 109.46725 * 326.56426 * 21 20 19 23 23 F 1.39893 * 109.47014 * 86.55900 * 21 20 19 24 24 F 1.39899 * 109.47417 * 206.56694 * 21 20 19 25 25 C 1.47070 * 136.05895 * 175.40222 * 18 16 15 26 26 H 0.96999 * 119.99795 * 359.97438 * 1 2 3 27 27 H 1.07992 * 119.96159 * 359.95224 * 11 10 9 28 28 H 1.08005 * 119.79769 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.83575 * 179.97438 * 13 12 11 30 30 H 1.08001 * 120.03635 * 180.02562 * 14 13 12 31 31 H 1.09003 * 113.46521 * 267.69757 * 19 18 16 32 32 H 1.08994 * 113.46761 * 38.12991 * 19 18 16 33 33 H 1.08999 * 114.39743 * 272.67952 * 20 19 18 34 34 H 1.08997 * 113.46624 * 321.86744 * 25 18 16 35 35 H 1.08998 * 113.46350 * 92.24677 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0087 -1.2011 -0.0005 8 1 3.0888 -1.2011 -0.0010 9 8 1.3347 -2.3687 -0.0005 10 6 2.0682 -3.5025 0.1132 11 6 3.4355 -3.4287 0.3422 12 6 4.1806 -4.5848 0.4583 13 6 3.5727 -5.8251 0.3472 14 6 2.2164 -5.9174 0.1203 15 6 1.4495 -4.7564 0.0006 16 6 -0.0037 -4.8482 -0.2368 17 8 -0.5907 -3.9304 -0.7769 18 7 -0.6807 -5.9492 0.1450 19 6 -0.3359 -7.2576 0.7213 20 6 -1.7412 -7.2901 1.3440 21 6 -2.4155 -8.6626 1.2926 22 9 -2.0255 -9.3303 0.1266 23 9 -2.0324 -9.4125 2.4097 24 9 -3.8050 -8.5000 1.2942 25 6 -2.0887 -6.3736 0.1627 26 1 -0.4850 0.8401 0.0004 27 1 3.9166 -2.4658 0.4292 28 1 5.2440 -4.5223 0.6368 29 1 4.1646 -6.7238 0.4392 30 1 1.7473 -6.8865 0.0349 31 1 -0.1748 -8.0330 -0.0277 32 1 0.4659 -7.2096 1.4581 33 1 -1.8129 -6.8087 2.3192 34 1 -2.7803 -5.5725 0.4235 35 1 -2.3901 -6.9151 -0.7340 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829149444.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:37 Heat of formation + Delta-G solvation = -160.578846 kcal Electronic energy + Delta-G solvation = -26063.719697 eV Core-core repulsion = 21613.625305 eV Total energy + Delta-G solvation = -4450.094392 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.09928 -48.60660 -48.56935 -41.71935 -40.58139 -38.71697 -38.05944 -34.35680 -32.86053 -31.21039 -30.60978 -27.62234 -27.23166 -27.02861 -24.37071 -23.14960 -22.41553 -20.62626 -19.92692 -19.52472 -19.39515 -18.97112 -18.59772 -17.93395 -17.07949 -16.46599 -16.32501 -15.82150 -15.78065 -15.55304 -15.47471 -15.32381 -15.14533 -15.00291 -14.84761 -14.73946 -14.67595 -14.33623 -14.08926 -13.74198 -13.65696 -13.56664 -13.04519 -12.76492 -12.67620 -12.55213 -12.33604 -12.10522 -11.96940 -11.48218 -10.87312 -10.75373 -9.97190 -9.78438 -9.06318 -8.48342 -6.18529 0.10871 0.69603 1.32271 1.41856 1.42632 1.52141 1.86347 1.99230 2.14529 2.42978 2.80367 2.84850 2.98248 3.17925 3.40000 3.46596 3.54902 3.79844 4.01148 4.08069 4.23503 4.27639 4.35952 4.43020 4.52583 4.56354 4.76555 4.83652 4.95876 5.06594 5.14731 5.47821 5.59559 5.68216 5.94293 6.14927 6.55471 6.92268 7.23322 7.75888 8.73353 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.019229 B = 0.003587 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.792103 B = 7804.378249 C = 8901.307019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.023 4.023 3 Si 1.023 2.977 4 H -0.245 1.245 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.423 4.423 8 H 0.108 0.892 9 O -0.198 6.198 10 C 0.149 3.851 11 C -0.254 4.254 12 C -0.039 4.039 13 C -0.197 4.197 14 C -0.035 4.035 15 C -0.237 4.237 16 C 0.587 3.413 17 O -0.571 6.571 18 N -0.654 5.654 19 C 0.109 3.891 20 C -0.167 4.167 21 C 0.479 3.521 22 F -0.179 7.179 23 F -0.177 7.177 24 F -0.184 7.184 25 C 0.110 3.890 26 H 0.272 0.728 27 H 0.124 0.876 28 H 0.156 0.844 29 H 0.167 0.833 30 H 0.159 0.841 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.160 0.840 34 H 0.079 0.921 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -19.792 4.677 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.221 4.221 3 Si 0.842 3.158 4 H -0.168 1.168 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.499 4.499 8 H 0.125 0.875 9 O -0.101 6.101 10 C 0.094 3.906 11 C -0.273 4.273 12 C -0.057 4.057 13 C -0.215 4.215 14 C -0.053 4.053 15 C -0.242 4.242 16 C 0.380 3.620 17 O -0.450 6.450 18 N -0.391 5.391 19 C -0.012 4.012 20 C -0.187 4.187 21 C 0.424 3.576 22 F -0.160 7.160 23 F -0.159 7.159 24 F -0.165 7.165 25 C -0.012 4.012 26 H 0.081 0.919 27 H 0.142 0.858 28 H 0.173 0.827 29 H 0.184 0.816 30 H 0.176 0.824 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.178 0.822 34 H 0.098 0.902 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.768 -18.926 4.283 19.485 hybrid contribution -0.362 1.056 -0.174 1.129 sum 1.406 -17.871 4.109 18.391 Atomic orbital electron populations 1.70293 1.08426 1.28668 1.47237 1.26758 0.96748 1.03152 0.95473 0.84484 0.78464 0.74378 0.78515 1.16757 1.19616 1.19148 1.22046 0.92701 0.81581 1.53557 0.87491 1.84113 1.35491 1.12418 1.78094 1.20038 0.91767 0.87217 0.91580 1.21300 0.92736 1.00991 1.12272 1.21458 1.00518 0.91236 0.92524 1.21204 0.94214 0.98391 1.07691 1.21438 0.94471 0.95740 0.93649 1.19081 0.92322 0.92673 1.20102 1.18050 0.87101 0.79986 0.76821 1.90883 1.70859 1.39310 1.43965 1.49267 1.10125 1.14738 1.64945 1.23462 0.95747 0.84137 0.97866 1.24394 0.98780 0.91559 1.03923 1.19885 0.76774 0.87403 0.73538 1.93185 1.90626 1.82768 1.49446 1.93212 1.90867 1.78898 1.52902 1.93208 1.31423 1.95702 1.96189 1.22987 0.84833 0.96394 0.97018 0.91938 0.85813 0.82688 0.81600 0.82399 0.85706 0.86582 0.82221 0.90199 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.12 13.67 21.62 0.30 -58.82 16 2 C -0.02 -1.33 5.49 84.85 0.47 -0.86 16 3 Si 1.02 43.86 29.55 68.60 2.03 45.89 16 4 H -0.24 -9.44 7.11 99.48 0.71 -8.74 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.42 -25.40 9.44 67.93 0.64 -24.76 16 8 H 0.11 5.76 5.30 -2.91 -0.02 5.74 16 9 O -0.20 -12.53 8.14 -0.83 -0.01 -12.53 16 10 C 0.15 7.57 6.63 22.91 0.15 7.72 16 11 C -0.25 -10.60 9.13 22.36 0.20 -10.39 16 12 C -0.04 -1.17 10.03 22.30 0.22 -0.95 16 13 C -0.20 -5.00 10.02 22.25 0.22 -4.77 16 14 C -0.03 -1.03 8.74 22.52 0.20 -0.83 16 15 C -0.24 -10.20 5.86 -19.99 -0.12 -10.31 16 16 C 0.59 26.75 7.78 86.69 0.67 27.43 16 17 O -0.57 -33.84 16.36 15.22 0.25 -33.59 16 18 N -0.65 -20.51 3.68 -861.56 -3.17 -23.68 16 19 C 0.11 1.97 5.67 83.26 0.47 2.45 16 20 C -0.17 -2.79 4.19 -10.37 -0.04 -2.83 16 21 C 0.48 7.45 3.08 71.98 0.22 7.67 16 22 F -0.18 -2.83 15.70 44.97 0.71 -2.12 16 23 F -0.18 -2.79 17.32 44.97 0.78 -2.01 16 24 F -0.18 -3.31 17.19 44.97 0.77 -2.53 16 25 C 0.11 2.68 8.00 83.18 0.67 3.35 16 26 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 27 H 0.12 5.26 5.71 -2.91 -0.02 5.24 16 28 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.16 3.25 5.36 -2.91 -0.02 3.24 16 31 H 0.13 1.64 7.06 -2.39 -0.02 1.63 16 32 H 0.12 1.73 7.06 -2.39 -0.02 1.71 16 33 H 0.16 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.11 2.24 7.92 -2.39 -0.02 2.22 16 Total: -1.00 -87.27 316.09 6.80 -80.47 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.16 Total: 16.04 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 3.98 Total: -7.11 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -2.87 Total: -82.50 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: 0.24 Total: -46.12 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 2.26 Total: -6.67 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -87.27 6.80 -80.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829149444.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.106 kcal (2) G-P(sol) polarization free energy of solvation -87.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds