Wall clock time and date at job start Tue Mar 31 2020 11:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99970 * 2 1 4 4 H 1.48496 * 109.46913 * 239.99504 * 3 2 1 5 5 H 1.48499 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46968 * 119.99706 * 3 2 1 7 7 C 1.37878 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99770 * 175.15030 * 7 2 1 9 9 C 1.50700 * 120.00117 * 355.42938 * 7 2 1 10 10 C 1.53000 * 115.54762 * 274.92048 * 9 7 2 11 11 O 1.45197 * 109.47259 * 296.13066 * 10 9 7 12 12 C 1.34673 * 117.00065 * 184.88022 * 11 10 9 13 13 O 1.21432 * 120.00095 * 5.10518 * 12 11 10 14 14 C 1.48070 * 120.00260 * 185.10399 * 12 11 10 15 15 C 1.39349 * 119.73115 * 185.09907 * 14 12 11 16 16 C 1.38579 * 119.05621 * 180.02562 * 15 14 12 17 17 C 1.38620 * 118.49401 * 0.02562 * 16 15 14 18 18 C 1.38586 * 119.35647 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.54582 * 179.97438 * 18 17 16 20 20 F 1.39907 * 109.47018 * 89.99713 * 19 18 17 21 21 F 1.39890 * 109.47352 * 209.99951 * 19 18 17 22 22 F 1.39903 * 109.47162 * 330.00434 * 19 18 17 23 23 N 1.31502 * 120.90779 * 359.72387 * 18 17 16 24 24 C 1.53004 * 117.49954 * 129.25150 * 9 7 2 25 25 C 1.52997 * 117.49934 * 60.59052 * 9 7 2 26 26 H 0.96998 * 120.00406 * 5.00880 * 1 2 3 27 27 H 1.09001 * 109.47286 * 56.13661 * 10 9 7 28 28 H 1.09005 * 109.46647 * 176.13342 * 10 9 7 29 29 H 1.08004 * 120.46647 * 359.97209 * 15 14 12 30 30 H 1.08004 * 120.75612 * 180.02562 * 16 15 14 31 31 H 1.08004 * 120.32490 * 180.02562 * 17 16 15 32 32 H 1.08999 * 117.49380 * 359.97438 * 24 9 7 33 33 H 1.09000 * 117.49967 * 145.02058 * 24 9 7 34 34 H 1.08997 * 117.49972 * 214.97839 * 25 9 7 35 35 H 1.09005 * 117.50090 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1957 -0.0785 9 6 1.2546 -2.4971 0.1051 10 6 0.9188 -2.9528 1.5265 11 8 2.1479 -3.2141 2.2541 12 6 2.0273 -3.7229 3.4952 13 8 0.9326 -4.0290 3.9222 14 6 3.2297 -3.9090 4.3391 15 6 3.1135 -4.5335 5.5794 16 6 4.2477 -4.7000 6.3580 17 6 5.4591 -4.2357 5.8695 18 6 5.5010 -3.6239 4.6267 19 6 6.8156 -3.1171 4.0918 20 9 7.4421 -4.1301 3.3579 21 9 6.5875 -2.0136 3.2629 22 9 7.6377 -2.7373 5.1582 23 7 4.4103 -3.4840 3.9056 24 6 1.5730 -3.5803 -0.9275 25 6 0.2453 -2.8218 -0.9979 26 1 -0.4850 0.8368 -0.0733 27 1 0.3546 -2.1710 2.0351 28 1 0.3210 -3.8634 1.4843 29 1 2.1529 -4.8820 5.9292 30 1 4.1893 -5.1806 7.3234 31 1 6.3617 -4.3504 6.4515 32 1 2.3246 -3.3502 -1.6827 33 1 1.5428 -4.6177 -0.5943 34 1 -0.6578 -3.3605 -0.7110 35 1 0.1233 -2.0927 -1.7991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835188760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:46 Heat of formation + Delta-G solvation = -165.239390 kcal Electronic energy + Delta-G solvation = -25972.088163 eV Core-core repulsion = 21521.791674 eV Total energy + Delta-G solvation = -4450.296489 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -50.26023 -47.83472 -47.64146 -40.96380 -39.44987 -36.83163 -35.37811 -33.23858 -32.62287 -31.91028 -27.37545 -26.87326 -25.50899 -24.73503 -22.92753 -21.35386 -20.96984 -19.28584 -18.71918 -18.67872 -18.59501 -17.61469 -16.70479 -16.52680 -16.05037 -15.85933 -15.53082 -14.75749 -14.57825 -14.49966 -14.19277 -14.13505 -14.13006 -13.85086 -13.80569 -13.74807 -13.16584 -13.02629 -12.49200 -12.25237 -12.03811 -11.62173 -10.89972 -10.87398 -10.65563 -10.50928 -10.47862 -10.23971 -10.00553 -9.96335 -9.81349 -9.49732 -8.89436 -8.41818 -8.18926 -6.01675 -4.07973 0.07744 0.57825 2.22625 2.36279 2.87601 3.34768 3.35621 3.38319 3.38619 3.44039 3.66826 4.21907 4.25878 4.41418 4.43572 4.51373 4.56961 4.84978 4.98866 5.25829 5.34523 5.45568 5.57060 5.89804 5.91743 6.21349 6.28388 6.48289 6.62148 6.75803 6.96901 7.06171 7.17419 7.34972 7.51900 7.91852 8.15761 8.42720 8.94497 9.57773 11.06141 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.004541 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.500249 B = 6165.186502 C = 7275.280982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.485 4.485 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.112 3.888 11 O -0.306 6.306 12 C 0.512 3.488 13 O -0.507 6.507 14 C 0.112 3.888 15 C -0.082 4.082 16 C -0.080 4.080 17 C -0.103 4.103 18 C 0.034 3.966 19 C 0.525 3.475 20 F -0.169 7.169 21 F -0.155 7.155 22 F -0.173 7.173 23 N -0.385 5.385 24 C -0.205 4.205 25 C -0.137 4.137 26 H 0.261 0.739 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.381 -10.009 13.706 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.522 4.522 8 H 0.082 0.918 9 C 0.033 3.967 10 C 0.039 3.961 11 O -0.219 6.219 12 C 0.354 3.646 13 O -0.397 6.397 14 C -0.026 4.026 15 C -0.102 4.102 16 C -0.105 4.105 17 C -0.123 4.123 18 C -0.109 4.109 19 C 0.469 3.531 20 F -0.151 7.151 21 F -0.136 7.136 22 F -0.155 7.155 23 N -0.096 5.096 24 C -0.243 4.243 25 C -0.175 4.175 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.180 0.820 30 H 0.176 0.824 31 H 0.173 0.827 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.912 -9.533 12.967 18.902 hybrid contribution 0.402 0.649 0.699 1.035 sum 10.315 -8.883 13.666 19.289 Atomic orbital electron populations 1.69973 1.05850 1.26955 1.49449 1.24999 0.94866 0.99027 0.94528 0.86660 0.79646 0.82859 0.78942 1.20131 1.21339 1.19981 1.20376 0.93010 0.88158 1.50687 0.91794 1.18770 0.99745 0.93958 0.84257 1.23083 0.81451 0.98291 0.93246 1.86739 1.39262 1.71488 1.24398 1.20573 0.86694 0.75138 0.82156 1.90818 1.26907 1.48353 1.73631 1.20353 0.90247 0.98836 0.93200 1.22400 1.01292 0.94043 0.92460 1.21632 0.90931 0.97523 1.00449 1.22131 1.00550 0.94913 0.94691 1.21037 0.93142 1.02738 0.93950 1.17773 0.83319 0.76231 0.75761 1.93246 1.83806 1.60136 1.77890 1.93307 1.94421 1.53554 1.72298 1.93199 1.74330 1.91514 1.56420 1.67227 0.97361 1.11870 1.33095 1.23014 1.00306 0.95546 1.05385 1.22524 0.90809 1.01345 1.02788 0.92900 0.90674 0.93677 0.81998 0.82379 0.82715 0.90008 0.91648 0.91768 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.08 12.65 55.43 0.70 -24.38 16 2 C 0.07 1.90 5.43 -17.82 -0.10 1.80 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.48 -13.51 8.75 -34.44 -0.30 -13.81 16 8 H 0.06 1.82 7.82 -52.49 -0.41 1.41 16 9 C 0.03 0.84 1.70 -155.66 -0.26 0.57 16 10 C 0.11 2.66 5.39 37.16 0.20 2.86 16 11 O -0.31 -6.94 9.96 -40.42 -0.40 -7.35 16 12 C 0.51 9.92 7.94 34.76 0.28 10.20 16 13 O -0.51 -10.12 16.03 -19.21 -0.31 -10.43 16 14 C 0.11 1.75 6.75 -83.02 -0.56 1.19 16 15 C -0.08 -0.89 9.63 -39.04 -0.38 -1.26 16 16 C -0.08 -0.60 10.17 -39.31 -0.40 -1.00 16 17 C -0.10 -0.89 9.44 -39.31 -0.37 -1.26 16 18 C 0.03 0.44 6.30 -82.60 -0.52 -0.09 16 19 C 0.52 6.71 3.43 36.01 0.12 6.83 16 20 F -0.17 -2.17 17.30 2.25 0.04 -2.13 16 21 F -0.15 -2.44 17.04 2.25 0.04 -2.41 16 22 F -0.17 -1.85 16.44 2.25 0.04 -1.82 16 23 N -0.38 -6.34 9.72 -6.07 -0.06 -6.40 16 24 C -0.21 -4.58 9.96 -26.69 -0.27 -4.84 16 25 C -0.14 -3.22 9.15 -26.69 -0.24 -3.46 16 26 H 0.26 7.10 8.32 -40.82 -0.34 6.77 16 27 H 0.07 1.91 8.14 -51.93 -0.42 1.49 16 28 H 0.04 0.99 7.93 -51.93 -0.41 0.58 16 29 H 0.16 1.48 7.65 -52.48 -0.40 1.08 16 30 H 0.16 0.53 8.06 -52.48 -0.42 0.11 16 31 H 0.16 0.82 7.60 -52.48 -0.40 0.42 16 32 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.09 2.27 8.14 -51.93 -0.42 1.85 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -31.51 332.10 -6.07 -37.58 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -3.29 Total: -2.06 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.80 Total: -2.26 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.64 Total: -30.78 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.71 Total: -17.77 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.11 Total: -6.35 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.51 -6.07 -37.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.662 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds