Wall clock time and date at job start Tue Mar 31 2020 11:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99970 * 2 1 4 4 H 1.48496 * 109.46913 * 239.99504 * 3 2 1 5 5 H 1.48499 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46968 * 119.99706 * 3 2 1 7 7 C 1.37878 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99770 * 175.15030 * 7 2 1 9 9 C 1.50700 * 120.00117 * 355.42938 * 7 2 1 10 10 C 1.53000 * 115.54762 * 274.92048 * 9 7 2 11 11 O 1.45197 * 109.47259 * 296.13066 * 10 9 7 12 12 C 1.34673 * 117.00065 * 184.88022 * 11 10 9 13 13 O 1.21432 * 120.00095 * 5.10518 * 12 11 10 14 14 C 1.48070 * 120.00260 * 185.10399 * 12 11 10 15 15 C 1.39349 * 119.73115 * 185.09907 * 14 12 11 16 16 C 1.38579 * 119.05621 * 180.02562 * 15 14 12 17 17 C 1.38620 * 118.49401 * 0.02562 * 16 15 14 18 18 C 1.38586 * 119.35647 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.54582 * 179.97438 * 18 17 16 20 20 F 1.39907 * 109.47018 * 89.99713 * 19 18 17 21 21 F 1.39890 * 109.47352 * 209.99951 * 19 18 17 22 22 F 1.39903 * 109.47162 * 330.00434 * 19 18 17 23 23 N 1.31502 * 120.90779 * 359.72387 * 18 17 16 24 24 C 1.53004 * 117.49954 * 129.25150 * 9 7 2 25 25 C 1.52997 * 117.49934 * 60.59052 * 9 7 2 26 26 H 0.96998 * 120.00406 * 5.00880 * 1 2 3 27 27 H 1.09001 * 109.47286 * 56.13661 * 10 9 7 28 28 H 1.09005 * 109.46647 * 176.13342 * 10 9 7 29 29 H 1.08004 * 120.46647 * 359.97209 * 15 14 12 30 30 H 1.08004 * 120.75612 * 180.02562 * 16 15 14 31 31 H 1.08004 * 120.32490 * 180.02562 * 17 16 15 32 32 H 1.08999 * 117.49380 * 359.97438 * 24 9 7 33 33 H 1.09000 * 117.49967 * 145.02058 * 24 9 7 34 34 H 1.08997 * 117.49972 * 214.97839 * 25 9 7 35 35 H 1.09005 * 117.50090 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1957 -0.0785 9 6 1.2546 -2.4971 0.1051 10 6 0.9188 -2.9528 1.5265 11 8 2.1479 -3.2141 2.2541 12 6 2.0273 -3.7229 3.4952 13 8 0.9326 -4.0290 3.9222 14 6 3.2297 -3.9090 4.3391 15 6 3.1135 -4.5335 5.5794 16 6 4.2477 -4.7000 6.3580 17 6 5.4591 -4.2357 5.8695 18 6 5.5010 -3.6239 4.6267 19 6 6.8156 -3.1171 4.0918 20 9 7.4421 -4.1301 3.3579 21 9 6.5875 -2.0136 3.2629 22 9 7.6377 -2.7373 5.1582 23 7 4.4103 -3.4840 3.9056 24 6 1.5730 -3.5803 -0.9275 25 6 0.2453 -2.8218 -0.9979 26 1 -0.4850 0.8368 -0.0733 27 1 0.3546 -2.1710 2.0351 28 1 0.3210 -3.8634 1.4843 29 1 2.1529 -4.8820 5.9292 30 1 4.1893 -5.1806 7.3234 31 1 6.3617 -4.3504 6.4515 32 1 2.3246 -3.3502 -1.6827 33 1 1.5428 -4.6177 -0.5943 34 1 -0.6578 -3.3605 -0.7110 35 1 0.1233 -2.0927 -1.7991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835188760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:46 Heat of formation + Delta-G solvation = -183.395802 kcal Electronic energy + Delta-G solvation = -25972.875484 eV Core-core repulsion = 21521.791674 eV Total energy + Delta-G solvation = -4451.083810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.25959 -48.78109 -48.72951 -42.06655 -40.84202 -38.62269 -37.08684 -34.09519 -34.02601 -33.58639 -29.04877 -27.92033 -27.42016 -26.04041 -23.83926 -23.01872 -22.43179 -21.23413 -19.82321 -19.69776 -19.63386 -18.88457 -18.44457 -17.54870 -17.40846 -17.18338 -16.96303 -16.60336 -15.82822 -15.64876 -15.52302 -15.29794 -15.15577 -14.94507 -14.88084 -14.86767 -14.67377 -14.10746 -13.90652 -13.85892 -13.60031 -13.15019 -12.93790 -12.86371 -12.45330 -12.13321 -12.04325 -11.75862 -11.46417 -11.30073 -10.97725 -10.91553 -10.74796 -10.48187 -10.11123 -8.14376 -6.26172 -0.84209 -0.26461 1.13752 1.27252 1.37732 1.40216 1.47617 1.53476 2.30395 2.37096 2.39904 2.71925 3.11783 3.18776 3.26299 3.45215 3.59670 3.69719 3.77306 3.97781 4.07692 4.18389 4.33417 4.40499 4.61235 4.70711 4.74387 4.85199 4.95114 5.16459 5.19618 5.31869 5.50458 5.62461 5.73773 6.16208 6.34461 6.65444 6.77511 7.41643 8.92786 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.004541 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.500249 B = 6165.186502 C = 7275.280982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.502 4.502 8 H 0.046 0.954 9 C -0.002 4.002 10 C 0.125 3.875 11 O -0.330 6.330 12 C 0.507 3.493 13 O -0.522 6.522 14 C 0.075 3.925 15 C -0.069 4.069 16 C -0.052 4.052 17 C -0.078 4.078 18 C 0.014 3.986 19 C 0.525 3.475 20 F -0.172 7.172 21 F -0.180 7.180 22 F -0.158 7.158 23 N -0.435 5.435 24 C -0.183 4.183 25 C -0.133 4.133 26 H 0.263 0.737 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.179 0.821 30 H 0.217 0.783 31 H 0.198 0.802 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.678 -11.441 16.336 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.173 4.173 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.540 4.540 8 H 0.065 0.935 9 C -0.002 4.002 10 C 0.052 3.948 11 O -0.244 6.244 12 C 0.351 3.649 13 O -0.413 6.413 14 C -0.062 4.062 15 C -0.089 4.089 16 C -0.077 4.077 17 C -0.098 4.098 18 C -0.129 4.129 19 C 0.470 3.530 20 F -0.153 7.153 21 F -0.161 7.161 22 F -0.139 7.139 23 N -0.147 5.147 24 C -0.220 4.220 25 C -0.170 4.170 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.196 0.804 30 H 0.234 0.766 31 H 0.215 0.785 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.213 -10.974 15.598 22.124 hybrid contribution 0.109 1.023 0.001 1.029 sum 11.322 -9.951 15.600 21.692 Atomic orbital electron populations 1.70053 1.06760 1.27598 1.50035 1.25624 0.95667 1.01727 0.94302 0.85806 0.78658 0.79643 0.78769 1.19373 1.20322 1.20496 1.20551 0.92466 0.90015 1.50958 0.93529 1.18889 1.01307 0.94347 0.85683 1.22672 0.81953 0.97792 0.92418 1.86729 1.38596 1.72622 1.26446 1.21345 0.88347 0.73963 0.81237 1.90777 1.27897 1.49021 1.73568 1.20057 0.88724 1.02710 0.94686 1.22689 1.03491 0.92237 0.90484 1.22290 0.88674 0.95282 1.01461 1.22672 1.02785 0.91731 0.92573 1.21210 0.91788 1.04268 0.95634 1.17879 0.83961 0.75495 0.75698 1.93236 1.83906 1.60064 1.78117 1.93251 1.94652 1.54959 1.73282 1.93221 1.73919 1.91367 1.55415 1.66921 0.98585 1.13721 1.35470 1.23010 0.99291 0.96040 1.03625 1.22434 0.91876 1.01240 1.01459 0.92826 0.93693 0.92267 0.80406 0.76594 0.78462 0.90049 0.89188 0.90047 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.61 12.65 21.45 0.27 -52.34 16 2 C 0.03 1.55 5.43 84.66 0.46 2.01 16 3 Si 0.95 45.42 29.54 68.60 2.03 47.45 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.50 -29.00 8.75 25.60 0.22 -28.77 16 8 H 0.05 2.77 7.82 -2.91 -0.02 2.74 16 9 C 0.00 -0.09 1.70 -52.93 -0.09 -0.18 16 10 C 0.13 6.15 5.39 71.98 0.39 6.54 16 11 O -0.33 -15.65 9.96 -55.82 -0.56 -16.20 16 12 C 0.51 20.24 7.94 70.43 0.56 20.80 16 13 O -0.52 -21.23 16.03 20.06 0.32 -20.91 16 14 C 0.08 2.33 6.75 41.88 0.28 2.62 16 15 C -0.07 -1.30 9.63 22.62 0.22 -1.08 16 16 C -0.05 -0.50 10.17 22.44 0.23 -0.27 16 17 C -0.08 -1.00 9.44 22.44 0.21 -0.78 16 18 C 0.01 0.33 6.30 42.69 0.27 0.60 16 19 C 0.52 13.00 3.43 71.24 0.24 13.24 16 20 F -0.17 -4.28 17.30 44.97 0.78 -3.50 16 21 F -0.18 -5.86 17.04 44.97 0.77 -5.09 16 22 F -0.16 -3.03 16.44 44.97 0.74 -2.29 16 23 N -0.44 -14.47 9.72 -173.11 -1.68 -16.15 16 24 C -0.18 -8.14 9.96 30.62 0.30 -7.84 16 25 C -0.13 -6.29 9.15 30.62 0.28 -6.01 16 26 H 0.26 14.53 8.32 -92.71 -0.77 13.76 16 27 H 0.04 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.06 2.66 7.93 -2.38 -0.02 2.64 16 29 H 0.18 2.70 7.65 -2.91 -0.02 2.68 16 30 H 0.22 -0.33 8.06 -2.91 -0.02 -0.35 16 31 H 0.20 0.83 7.60 -2.91 -0.02 0.81 16 32 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 33 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 35 H 0.07 3.67 8.14 -2.38 -0.02 3.65 16 Total: -1.00 -73.37 332.10 7.39 -65.98 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.14 Total: 2.18 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 3.58 Total: 0.87 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -1.41 Total: -68.48 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.23 Total: -37.11 kcal Atomic # 9 Polarization: -13.17 SS G_CDS: 2.28 Total: -10.89 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -73.37 7.39 -65.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.414 kcal (2) G-P(sol) polarization free energy of solvation -73.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds