Wall clock time and date at job start Tue Mar 31 2020 11:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00303 * 2 1 4 4 H 1.48498 * 109.46964 * 90.00098 * 3 2 1 5 5 H 1.48498 * 109.47529 * 210.00272 * 3 2 1 6 6 H 1.48500 * 109.47009 * 330.00237 * 3 2 1 7 7 C 1.37880 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00057 * 181.77904 * 7 2 1 9 9 C 1.50696 * 120.00174 * 1.78410 * 7 2 1 10 10 O 1.45202 * 112.84971 * 298.52075 * 9 7 2 11 11 C 1.34685 * 116.99667 * 294.88642 * 10 9 7 12 12 O 1.21423 * 119.99957 * 2.99166 * 11 10 9 13 13 C 1.48073 * 119.99526 * 182.99266 * 11 10 9 14 14 C 1.39354 * 119.72251 * 180.02562 * 13 11 10 15 15 C 1.38581 * 119.05303 * 179.97438 * 14 13 11 16 16 C 1.38629 * 118.49380 * 359.97438 * 15 14 13 17 17 C 1.38576 * 119.35451 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.54556 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.47065 * 89.99872 * 18 17 16 20 20 F 1.39895 * 109.47286 * 209.99737 * 18 17 16 21 21 F 1.39901 * 109.46819 * 329.99789 * 18 17 16 22 22 N 1.31505 * 120.91004 * 359.73885 * 17 16 15 23 23 C 1.53783 * 113.61720 * 167.32416 * 9 7 2 24 24 C 1.53951 * 87.01830 * 220.04355 * 23 9 7 25 25 C 1.53777 * 87.11357 * 25.36304 * 24 23 9 26 26 H 0.97001 * 119.99616 * 175.06277 * 1 2 3 27 27 H 1.08003 * 120.47214 * 359.95122 * 14 13 11 28 28 H 1.08002 * 120.75610 * 180.02562 * 15 14 13 29 29 H 1.08004 * 120.31963 * 179.97438 * 16 15 14 30 30 H 1.08996 * 113.61139 * 334.56786 * 23 9 7 31 31 H 1.09001 * 113.61305 * 105.46537 * 23 9 7 32 32 H 1.09000 * 113.53982 * 270.80739 * 24 23 9 33 33 H 1.09010 * 113.74037 * 139.94364 * 24 23 9 34 34 H 1.09002 * 113.61658 * 220.08748 * 25 24 23 35 35 H 1.09005 * 113.69024 * 89.19024 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4402 -0.7001 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0841 -1.1944 0.0285 9 6 1.2516 -2.4988 -0.0417 10 8 0.3850 -2.6863 1.1081 11 6 0.9811 -2.8049 2.3101 12 8 2.1872 -2.6990 2.4027 13 6 0.1656 -3.0646 3.5184 14 6 0.7882 -3.1858 4.7592 15 6 0.0116 -3.4283 5.8810 16 6 -1.3611 -3.5407 5.7234 17 6 -1.9127 -3.4090 4.4590 18 6 -3.4044 -3.5309 4.2826 19 9 -3.9948 -2.2700 4.4195 20 9 -3.6834 -4.0407 3.0101 21 9 -3.9197 -4.3952 5.2545 22 7 -1.1529 -3.1744 3.4116 23 6 2.1424 -3.7148 -0.3465 24 6 0.9942 -4.2328 -1.2317 25 6 0.5565 -2.7668 -1.3870 26 1 -0.4850 -0.8370 -0.0723 27 1 1.8608 -3.0925 4.8453 28 1 0.4653 -3.5267 6.8562 29 1 -1.9943 -3.7299 6.5776 30 1 3.0453 -3.4658 -0.9040 31 1 2.3402 -4.3403 0.5240 32 1 0.2737 -4.8489 -0.6937 33 1 1.3296 -4.6893 -2.1630 34 1 -0.5242 -2.6281 -1.3554 35 1 1.0243 -2.2570 -2.2293 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835398932.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:34 Heat of formation + Delta-G solvation = -170.655695 kcal Electronic energy + Delta-G solvation = -26774.198884 eV Core-core repulsion = 22323.667527 eV Total energy + Delta-G solvation = -4450.531357 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.18821 -47.75480 -47.58393 -40.68740 -39.37581 -37.17113 -34.40947 -32.99308 -32.44754 -32.28591 -26.82592 -26.20045 -25.19193 -24.70147 -22.95012 -22.49166 -21.04229 -18.80748 -18.58822 -18.54356 -18.29700 -17.62204 -16.81000 -16.32700 -15.84118 -15.29161 -15.16115 -14.62125 -14.43969 -14.23465 -14.08473 -13.96216 -13.79250 -13.77061 -13.75660 -13.62002 -13.37317 -12.87836 -12.40313 -12.37914 -11.91856 -11.44484 -10.87519 -10.60766 -10.44693 -10.30654 -10.23725 -10.19132 -10.08542 -10.05102 -9.61035 -9.56645 -9.08303 -8.49508 -8.18751 -6.39754 -4.19882 0.33100 0.79350 2.35411 2.77387 3.25192 3.41930 3.44060 3.49243 3.60730 3.77617 3.82990 4.34924 4.43310 4.48332 4.61702 4.68294 4.81691 5.06371 5.23634 5.32203 5.54689 5.59409 5.66025 5.72153 5.91212 6.11910 6.27210 6.31920 6.63027 6.67440 6.85903 7.07557 7.26635 7.37862 7.54274 8.04873 8.36487 8.76072 8.85956 9.56927 10.98030 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.004654 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.054110 B = 6014.346350 C = 6143.350000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.030 3.970 3 Si 1.068 2.932 4 H -0.288 1.288 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.596 4.596 8 H 0.061 0.939 9 C 0.207 3.793 10 O -0.325 6.325 11 C 0.520 3.480 12 O -0.485 6.485 13 C 0.117 3.883 14 C -0.086 4.086 15 C -0.080 4.080 16 C -0.110 4.110 17 C 0.030 3.970 18 C 0.526 3.474 19 F -0.168 7.168 20 F -0.160 7.160 21 F -0.174 7.174 22 N -0.390 5.390 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.109 4.109 26 H 0.282 0.718 27 H 0.161 0.839 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 -8.726 11.484 14.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.179 4.179 3 Si 0.896 3.104 4 H -0.215 1.215 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.633 4.633 8 H 0.079 0.921 9 C 0.173 3.827 10 O -0.240 6.240 11 C 0.361 3.639 12 O -0.372 6.372 13 C -0.022 4.022 14 C -0.106 4.106 15 C -0.106 4.106 16 C -0.130 4.130 17 C -0.112 4.112 18 C 0.470 3.530 19 F -0.150 7.150 20 F -0.141 7.141 21 F -0.156 7.156 22 N -0.101 5.101 23 C -0.182 4.182 24 C -0.186 4.186 25 C -0.147 4.147 26 H 0.094 0.906 27 H 0.179 0.821 28 H 0.174 0.826 29 H 0.170 0.830 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.907 -6.959 10.633 13.295 hybrid contribution 0.359 -1.674 0.808 1.893 sum -3.549 -8.634 11.441 14.766 Atomic orbital electron populations 1.70649 1.06756 1.32402 1.42345 1.25883 0.96532 1.02619 0.92822 0.83569 0.74846 0.75079 0.76906 1.21470 1.21192 1.20862 1.22045 0.94431 0.90233 1.56640 0.92120 1.21030 0.87058 0.94138 0.80463 1.86587 1.43078 1.79595 1.14721 1.20098 0.85500 0.74686 0.83662 1.90780 1.14368 1.45369 1.86692 1.20845 0.88559 0.99317 0.93450 1.22423 1.03163 0.93685 0.91357 1.21609 0.92656 0.96700 0.99638 1.22052 0.96772 0.96947 0.97232 1.21007 0.93429 1.05328 0.91444 1.17790 0.86543 0.74217 0.74428 1.93253 1.85533 1.40702 1.95487 1.93262 1.94489 1.86888 1.39434 1.93188 1.88424 1.70488 1.63477 1.67241 1.05833 1.05473 1.31556 1.23367 0.97665 0.98325 0.98831 1.22994 0.98918 0.97378 0.99340 1.22950 1.00290 0.94025 0.97391 0.90554 0.82102 0.82608 0.82988 0.89805 0.92952 0.91152 0.92507 0.92105 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.51 55.43 0.75 -25.73 16 2 C 0.03 0.86 5.40 -17.82 -0.10 0.76 16 3 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.60 -16.66 7.35 -34.44 -0.25 -16.91 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.21 5.21 0.11 -90.96 -0.01 5.20 16 10 O -0.32 -8.29 8.91 -40.45 -0.36 -8.66 16 11 C 0.52 12.14 7.33 34.77 0.25 12.40 16 12 O -0.49 -11.87 14.47 -19.21 -0.28 -12.15 16 13 C 0.12 2.21 6.75 -83.02 -0.56 1.65 16 14 C -0.09 -1.21 9.63 -39.04 -0.38 -1.58 16 15 C -0.08 -0.81 10.17 -39.31 -0.40 -1.21 16 16 C -0.11 -1.19 9.44 -39.31 -0.37 -1.56 16 17 C 0.03 0.45 6.30 -82.61 -0.52 -0.07 16 18 C 0.53 7.40 3.43 36.01 0.12 7.52 16 19 F -0.17 -2.48 17.30 2.25 0.04 -2.44 16 20 F -0.16 -2.56 17.04 2.25 0.04 -2.52 16 21 F -0.17 -2.02 16.44 2.25 0.04 -1.98 16 22 N -0.39 -7.36 9.72 -6.07 -0.06 -7.42 16 23 C -0.14 -3.16 6.91 -25.83 -0.18 -3.34 16 24 C -0.15 -2.91 8.03 -25.83 -0.21 -3.12 16 25 C -0.11 -2.47 6.67 -25.92 -0.17 -2.64 16 26 H 0.28 8.49 5.76 -40.82 -0.24 8.26 16 27 H 0.16 2.04 7.64 -52.48 -0.40 1.63 16 28 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.15 1.10 7.60 -52.48 -0.40 0.70 16 30 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 31 H 0.05 1.14 7.32 -51.93 -0.38 0.76 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 34 H 0.06 1.40 7.77 -51.93 -0.40 1.00 16 35 H 0.09 2.02 8.09 -51.93 -0.42 1.60 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -32.75 320.56 -5.99 -38.74 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.13 Total: -0.01 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.77 Total: -2.90 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.69 Total: -33.15 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.64 Total: -20.80 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.11 Total: -6.95 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.75 -5.99 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835398932.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.915 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds