Wall clock time and date at job start Tue Mar 31 2020 11:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00303 * 2 1 4 4 H 1.48498 * 109.46964 * 90.00098 * 3 2 1 5 5 H 1.48498 * 109.47529 * 210.00272 * 3 2 1 6 6 H 1.48500 * 109.47009 * 330.00237 * 3 2 1 7 7 C 1.37880 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00057 * 181.77904 * 7 2 1 9 9 C 1.50696 * 120.00174 * 1.78410 * 7 2 1 10 10 O 1.45202 * 112.84971 * 298.52075 * 9 7 2 11 11 C 1.34685 * 116.99667 * 294.88642 * 10 9 7 12 12 O 1.21423 * 119.99957 * 2.99166 * 11 10 9 13 13 C 1.48073 * 119.99526 * 182.99266 * 11 10 9 14 14 C 1.39354 * 119.72251 * 180.02562 * 13 11 10 15 15 C 1.38581 * 119.05303 * 179.97438 * 14 13 11 16 16 C 1.38629 * 118.49380 * 359.97438 * 15 14 13 17 17 C 1.38576 * 119.35451 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.54556 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.47065 * 89.99872 * 18 17 16 20 20 F 1.39895 * 109.47286 * 209.99737 * 18 17 16 21 21 F 1.39901 * 109.46819 * 329.99789 * 18 17 16 22 22 N 1.31505 * 120.91004 * 359.73885 * 17 16 15 23 23 C 1.53783 * 113.61720 * 167.32416 * 9 7 2 24 24 C 1.53951 * 87.01830 * 220.04355 * 23 9 7 25 25 C 1.53777 * 87.11357 * 25.36304 * 24 23 9 26 26 H 0.97001 * 119.99616 * 175.06277 * 1 2 3 27 27 H 1.08003 * 120.47214 * 359.95122 * 14 13 11 28 28 H 1.08002 * 120.75610 * 180.02562 * 15 14 13 29 29 H 1.08004 * 120.31963 * 179.97438 * 16 15 14 30 30 H 1.08996 * 113.61139 * 334.56786 * 23 9 7 31 31 H 1.09001 * 113.61305 * 105.46537 * 23 9 7 32 32 H 1.09000 * 113.53982 * 270.80739 * 24 23 9 33 33 H 1.09010 * 113.74037 * 139.94364 * 24 23 9 34 34 H 1.09002 * 113.61658 * 220.08748 * 25 24 23 35 35 H 1.09005 * 113.69024 * 89.19024 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4402 -0.7001 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0841 -1.1944 0.0285 9 6 1.2516 -2.4988 -0.0417 10 8 0.3850 -2.6863 1.1081 11 6 0.9811 -2.8049 2.3101 12 8 2.1872 -2.6990 2.4027 13 6 0.1656 -3.0646 3.5184 14 6 0.7882 -3.1858 4.7592 15 6 0.0116 -3.4283 5.8810 16 6 -1.3611 -3.5407 5.7234 17 6 -1.9127 -3.4090 4.4590 18 6 -3.4044 -3.5309 4.2826 19 9 -3.9948 -2.2700 4.4195 20 9 -3.6834 -4.0407 3.0101 21 9 -3.9197 -4.3952 5.2545 22 7 -1.1529 -3.1744 3.4116 23 6 2.1424 -3.7148 -0.3465 24 6 0.9942 -4.2328 -1.2317 25 6 0.5565 -2.7668 -1.3870 26 1 -0.4850 -0.8370 -0.0723 27 1 1.8608 -3.0925 4.8453 28 1 0.4653 -3.5267 6.8562 29 1 -1.9943 -3.7299 6.5776 30 1 3.0453 -3.4658 -0.9040 31 1 2.3402 -4.3403 0.5240 32 1 0.2737 -4.8489 -0.6937 33 1 1.3296 -4.6893 -2.1630 34 1 -0.5242 -2.6281 -1.3554 35 1 1.0243 -2.2570 -2.2293 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835398932.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:32 Heat of formation + Delta-G solvation = -190.412482 kcal Electronic energy + Delta-G solvation = -26775.055603 eV Core-core repulsion = 22323.667527 eV Total energy + Delta-G solvation = -4451.388076 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -51.29237 -48.80944 -48.76147 -42.00437 -41.02928 -38.93541 -36.23439 -34.54648 -34.06279 -33.49254 -28.23864 -27.87192 -26.74370 -26.39100 -24.53527 -23.80832 -22.55461 -20.44623 -19.86879 -19.70695 -19.66776 -19.31952 -18.35022 -17.40263 -17.19507 -16.92784 -16.87917 -15.93958 -15.72458 -15.66186 -15.55094 -15.42750 -15.18875 -14.97200 -14.91553 -14.89779 -14.72883 -14.42014 -14.04299 -13.88912 -13.26049 -13.13853 -12.77983 -12.43974 -12.33641 -12.07770 -11.94710 -11.92553 -11.64857 -11.31287 -11.05305 -10.90985 -10.73558 -10.59905 -10.17379 -8.62294 -6.42550 -0.79603 -0.25473 1.24948 1.38131 1.47128 1.53104 1.73810 1.78782 2.34031 2.37848 2.51359 2.72952 3.13562 3.23730 3.31277 3.59154 3.66163 3.74264 3.78316 3.89690 3.99301 4.11441 4.18742 4.42042 4.69326 4.71566 4.78679 4.85902 4.93869 5.03133 5.18483 5.33481 5.46364 5.64264 6.03124 6.11108 6.25549 6.55887 7.00059 7.41686 8.74392 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.004654 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.054110 B = 6014.346350 C = 6143.350000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.016 4.016 3 Si 1.109 2.891 4 H -0.283 1.283 5 H -0.267 1.267 6 H -0.278 1.278 7 C -0.605 4.605 8 H 0.045 0.955 9 C 0.181 3.819 10 O -0.343 6.343 11 C 0.508 3.492 12 O -0.512 6.512 13 C 0.075 3.925 14 C -0.080 4.080 15 C -0.052 4.052 16 C -0.083 4.083 17 C 0.011 3.989 18 C 0.529 3.471 19 F -0.174 7.174 20 F -0.177 7.177 21 F -0.155 7.155 22 N -0.436 5.436 23 C -0.140 4.140 24 C -0.122 4.122 25 C -0.111 4.111 26 H 0.269 0.731 27 H 0.171 0.829 28 H 0.217 0.783 29 H 0.200 0.800 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.452 -9.668 14.135 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.218 4.218 3 Si 0.931 3.069 4 H -0.209 1.209 5 H -0.192 1.192 6 H -0.203 1.203 7 C -0.642 4.642 8 H 0.063 0.937 9 C 0.147 3.853 10 O -0.258 6.258 11 C 0.351 3.649 12 O -0.401 6.401 13 C -0.063 4.063 14 C -0.100 4.100 15 C -0.077 4.077 16 C -0.102 4.102 17 C -0.132 4.132 18 C 0.473 3.527 19 F -0.156 7.156 20 F -0.159 7.159 21 F -0.136 7.136 22 N -0.148 5.148 23 C -0.177 4.177 24 C -0.159 4.159 25 C -0.149 4.149 26 H 0.080 0.920 27 H 0.188 0.812 28 H 0.234 0.766 29 H 0.217 0.783 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.685 -7.924 13.283 15.899 hybrid contribution 0.242 -1.466 0.143 1.493 sum -3.444 -9.390 13.426 16.741 Atomic orbital electron populations 1.70762 1.07567 1.31559 1.45115 1.27157 0.96603 1.05974 0.92063 0.83057 0.74636 0.71842 0.77356 1.20932 1.19190 1.20290 1.22245 0.93841 0.91964 1.56198 0.93688 1.21253 0.88336 0.94351 0.81350 1.86549 1.43281 1.80119 1.15873 1.20969 0.86039 0.73585 0.84280 1.90723 1.15442 1.46820 1.87123 1.20409 0.88777 1.04019 0.93050 1.22662 1.04031 0.92674 0.90602 1.22271 0.91836 0.93200 1.00408 1.22646 0.97744 0.93257 0.96596 1.21307 0.93206 1.06268 0.92417 1.17781 0.86601 0.74158 0.74143 1.93239 1.85652 1.41219 1.95473 1.93224 1.94619 1.87117 1.40910 1.93221 1.88172 1.69785 1.62454 1.66941 1.06314 1.07188 1.34308 1.23308 0.98140 0.97036 0.99244 1.22847 0.97351 0.95426 1.00319 1.22924 0.99170 0.96584 0.96212 0.92005 0.81200 0.76649 0.78258 0.89506 0.93293 0.90668 0.88872 0.93494 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.69 13.51 21.45 0.29 -56.40 16 2 C -0.02 -0.90 5.40 84.66 0.46 -0.45 16 3 Si 1.11 51.88 29.90 68.60 2.05 53.93 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.61 -34.99 7.35 25.60 0.19 -34.80 16 8 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 9 C 0.18 9.47 0.11 -11.01 0.00 9.47 16 10 O -0.34 -18.38 8.91 -55.94 -0.50 -18.88 16 11 C 0.51 24.75 7.33 70.43 0.52 25.26 16 12 O -0.51 -26.05 14.47 20.08 0.29 -25.76 16 13 C 0.07 2.86 6.75 41.89 0.28 3.14 16 14 C -0.08 -2.07 9.63 22.62 0.22 -1.86 16 15 C -0.05 -0.78 10.17 22.45 0.23 -0.56 16 16 C -0.08 -1.42 9.44 22.44 0.21 -1.21 16 17 C 0.01 0.30 6.30 42.69 0.27 0.57 16 18 C 0.53 14.29 3.43 71.24 0.24 14.53 16 19 F -0.17 -5.00 17.30 44.97 0.78 -4.22 16 20 F -0.18 -5.78 17.04 44.97 0.77 -5.02 16 21 F -0.16 -3.17 16.44 44.97 0.74 -2.43 16 22 N -0.44 -16.69 9.72 -173.12 -1.68 -18.37 16 23 C -0.14 -6.21 6.91 31.18 0.22 -6.00 16 24 C -0.12 -4.71 8.03 31.18 0.25 -4.46 16 25 C -0.11 -5.19 6.67 31.12 0.21 -4.98 16 26 H 0.27 17.05 5.76 -92.71 -0.53 16.51 16 27 H 0.17 4.01 7.64 -2.91 -0.02 3.99 16 28 H 0.22 0.76 8.06 -2.91 -0.02 0.74 16 29 H 0.20 1.53 7.60 -2.91 -0.02 1.51 16 30 H 0.09 3.74 8.09 -2.39 -0.02 3.72 16 31 H 0.05 2.17 7.32 -2.39 -0.02 2.15 16 32 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 34 H 0.05 2.27 7.77 -2.39 -0.02 2.25 16 35 H 0.09 4.03 8.09 -2.38 -0.02 4.01 16 Total: -1.00 -77.63 320.56 7.40 -70.23 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.38 Total: 8.27 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 3.29 Total: -1.33 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -1.39 Total: -74.77 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.21 Total: -44.64 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 2.28 Total: -11.68 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.05 Total: 53.93 kcal Total: -77.63 7.40 -70.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835398932.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.183 kcal (2) G-P(sol) polarization free energy of solvation -77.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds