Wall clock time and date at job start Tue Mar 31 2020 11:27:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31554 * 1
3 3 Si 1.86804 * 120.00054 * 2 1
4 4 H 1.48501 * 109.47208 * 270.00506 * 3 2 1
5 5 H 1.48503 * 109.46778 * 30.00715 * 3 2 1
6 6 H 1.48501 * 109.47040 * 150.00170 * 3 2 1
7 7 C 1.38656 * 120.00364 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00663 * 179.97438 * 7 2 1
9 9 O 1.34838 * 119.99717 * 359.97438 * 7 2 1
10 10 C 1.35745 * 116.99964 * 185.06247 * 9 7 2
11 11 C 1.38935 * 120.04147 * 174.12975 * 10 9 7
12 12 C 1.38114 * 120.04413 * 179.71951 * 11 10 9
13 13 C 1.38233 * 120.12052 * 0.55819 * 12 11 10
14 14 C 1.38779 * 120.08197 * 359.71934 * 13 12 11
15 15 O 1.35916 * 120.02092 * 180.02562 * 14 13 12
16 16 C 1.34783 * 116.99605 * 255.26318 * 15 14 13
17 17 O 1.21536 * 120.00652 * 355.01756 * 16 15 14
18 18 C 1.47254 * 119.99937 * 175.01092 * 16 15 14
19 19 C 1.37441 * 128.57050 * 0.02689 * 18 16 15
20 20 O 1.33477 * 106.32647 * 179.97438 * 19 18 16
21 21 N 1.20655 * 113.17094 * 0.02562 * 20 19 18
22 22 C 1.29996 * 112.32295 * 359.69000 * 21 20 19
23 23 C 1.50701 * 127.33523 * 180.29424 * 22 21 20
24 24 C 1.52998 * 117.50216 * 8.94613 * 23 22 21
25 25 C 1.53000 * 117.50024 * 300.28571 * 23 22 21
26 26 C 1.38624 * 119.95804 * 0.02562 * 14 13 12
27 27 H 0.96993 * 120.00126 * 359.97438 * 1 2 3
28 28 H 1.08007 * 119.97616 * 359.97438 * 11 10 9
29 29 H 1.07995 * 119.94048 * 180.25668 * 12 11 10
30 30 H 1.07995 * 119.95628 * 179.70283 * 13 12 11
31 31 H 1.07999 * 126.83886 * 359.97130 * 19 18 16
32 32 H 1.09008 * 115.54776 * 154.61243 * 23 22 21
33 33 H 1.09001 * 117.49669 * 359.97438 * 24 23 22
34 34 H 1.08999 * 117.50443 * 145.01876 * 24 23 22
35 35 H 1.09004 * 117.49851 * 214.97600 * 25 23 22
36 36 H 1.08995 * 117.49878 * 359.97270 * 25 23 22
37 37 H 1.07999 * 120.05879 * 180.02562 * 26 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2496 1.6178 0.0000
4 1 2.4970 2.0465 -1.4001
5 1 1.4470 2.6526 0.7002
6 1 3.5472 1.4402 0.7000
7 6 2.0089 -1.2008 -0.0005
8 1 3.0889 -1.2008 -0.0010
9 8 1.3347 -2.3685 -0.0005
10 6 2.0700 -3.5046 0.1057
11 6 1.4359 -4.7340 0.2349
12 6 2.1839 -5.8905 0.3371
13 6 3.5647 -5.8272 0.3227
14 6 4.2035 -4.6013 0.1997
15 8 5.5612 -4.5405 0.1851
16 6 6.1658 -4.0971 1.3052
17 8 5.4984 -3.6884 2.2351
18 6 7.6351 -4.1079 1.4023
19 6 8.5526 -4.5265 0.4685
20 8 9.7560 -4.3411 1.0155
21 7 9.7053 -3.8786 2.1287
22 6 8.4839 -3.6675 2.5206
23 6 8.0333 -3.0968 3.8405
24 6 9.1078 -2.5211 4.7651
25 6 8.4334 -3.8512 5.1100
26 6 3.4560 -3.4389 0.0915
27 1 -0.4850 0.8400 0.0004
28 1 0.3572 -4.7857 0.2513
29 1 1.6892 -6.8457 0.4334
30 1 4.1470 -6.7327 0.4077
31 1 8.3419 -4.9259 -0.5125
32 1 7.0603 -2.6054 3.8326
33 1 10.1408 -2.5556 4.4188
34 1 8.8418 -1.6513 5.3658
35 1 7.7239 -3.8559 5.9375
36 1 9.0222 -4.7606 4.9905
37 1 3.9514 -2.4841 -0.0048
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000842427599.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:27:53
Heat of formation + Delta-G solvation = 19.667679 kcal
Electronic energy + Delta-G solvation = -25053.313421 eV
Core-core repulsion = 21152.891845 eV
Total energy + Delta-G solvation = -3900.421576 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.098 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-45.22763 -40.87550 -38.84282 -37.78555 -36.99237 -35.77415 -33.56337 -32.36517
-32.23406 -29.80452 -28.98642 -26.01254 -25.35693 -24.56183 -22.80125 -22.52694
-21.72675 -20.78232 -20.43666 -18.51972 -18.31978 -17.97687 -17.75141 -16.90585
-16.13260 -15.92267 -15.68619 -15.18316 -14.98519 -14.38519 -14.26673 -14.06581
-13.73073 -13.42687 -13.09990 -12.73766 -12.38643 -12.02134 -11.94287 -11.85241
-11.63800 -11.54483 -11.37135 -11.11518 -10.94591 -10.76481 -10.53058 -10.50831
-10.38975 -10.07570 -9.80114 -9.58289 -8.91622 -8.25441 -7.41808 -6.52230
-4.11734 0.70226 1.40924 1.62252 2.14401 2.55944 2.79514 3.05550
3.10015 3.12040 3.16203 3.55186 3.71409 3.91598 3.92670 4.40073
4.55350 4.65710 4.76058 4.78567 4.91732 5.02267 5.15391 5.23781
5.39390 5.46799 5.53416 5.66112 5.70990 5.86188 5.92062 5.94489
6.08923 6.19556 6.48620 6.78023 6.91230 7.02307 7.06632 7.27649
7.50622 7.87359 7.91027 8.01479 8.92888 9.58004 10.65091
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.011760 B = 0.003959 C = 0.003340
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2380.293094 B = 7070.667291 C = 8381.903149
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.859 5.859
2 C 0.043 3.957
3 Si 0.940 3.060
4 H -0.272 1.272
5 H -0.275 1.275
6 H -0.267 1.267
7 C -0.394 4.394
8 H 0.091 0.909
9 O -0.169 6.169
10 C 0.163 3.837
11 C -0.183 4.183
12 C -0.065 4.065
13 C -0.209 4.209
14 C 0.119 3.881
15 O -0.291 6.291
16 C 0.536 3.464
17 O -0.467 6.467
18 C -0.235 4.235
19 C 0.026 3.974
20 O 0.098 5.902
21 N -0.356 5.356
22 C 0.110 3.890
23 C -0.093 4.093
24 C -0.163 4.163
25 C -0.156 4.156
26 C -0.228 4.228
27 H 0.272 0.728
28 H 0.124 0.876
29 H 0.123 0.877
30 H 0.115 0.885
31 H 0.238 0.762
32 H 0.141 0.859
33 H 0.101 0.899
34 H 0.105 0.895
35 H 0.107 0.893
36 H 0.096 0.904
37 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.330 -8.931 3.246 18.894
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.493 5.493
2 C -0.162 4.162
3 Si 0.764 3.236
4 H -0.197 1.197
5 H -0.200 1.200
6 H -0.191 1.191
7 C -0.469 4.469
8 H 0.109 0.891
9 O -0.072 6.072
10 C 0.109 3.891
11 C -0.202 4.202
12 C -0.084 4.084
13 C -0.228 4.228
14 C 0.079 3.921
15 O -0.206 6.206
16 C 0.379 3.621
17 O -0.351 6.351
18 C -0.240 4.240
19 C -0.056 4.056
20 O 0.040 5.960
21 N -0.064 5.064
22 C -0.051 4.051
23 C -0.112 4.112
24 C -0.200 4.200
25 C -0.194 4.194
26 C -0.248 4.248
27 H 0.082 0.918
28 H 0.142 0.858
29 H 0.141 0.859
30 H 0.133 0.867
31 H 0.254 0.746
32 H 0.159 0.841
33 H 0.120 0.880
34 H 0.123 0.877
35 H 0.125 0.875
36 H 0.114 0.886
37 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 16.875 -8.379 4.023 19.265
hybrid contribution -0.453 0.796 -0.379 0.992
sum 16.421 -7.582 3.644 18.451
Atomic orbital electron populations
1.70027 1.05950 1.27887 1.45406 1.25282 0.95853 0.98829 0.96246
0.85728 0.79072 0.79966 0.78840 1.19706 1.20040 1.19119 1.21323
0.91775 0.80699 1.53151 0.89143 1.83999 1.34016 1.11394 1.77785
1.19104 0.89242 0.88450 0.92346 1.20361 1.00100 0.90131 1.09638
1.20492 0.92514 0.97258 0.98101 1.20502 0.94720 0.95651 1.11961
1.18159 0.78094 0.93819 1.02062 1.84520 1.20905 1.77611 1.37580
1.19727 0.86236 0.75336 0.80839 1.90923 1.65317 1.41260 1.37644
1.21224 0.92268 1.13647 0.96870 1.26697 0.83090 0.95828 0.99983
1.84594 1.30037 1.59497 1.21876 1.73640 1.20516 1.16168 0.96083
1.23821 0.86785 0.98212 0.96332 1.20449 1.01268 1.05021 0.84448
1.23065 0.97664 0.97581 1.01691 1.23044 1.03245 0.96135 0.96975
1.21212 0.94306 0.98045 1.11209 0.91846 0.85783 0.85881 0.86677
0.74626 0.84107 0.88025 0.87653 0.87482 0.88573 0.84983
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16
2 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16
3 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16
4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16
5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16
6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
7 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16
8 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16
9 O -0.17 -4.80 9.76 0.04 0.00 -4.80 16
10 C 0.16 3.95 6.65 -39.13 -0.26 3.69 16
11 C -0.18 -3.76 9.99 -39.37 -0.39 -4.16 16
12 C -0.07 -1.13 10.03 -39.63 -0.40 -1.53 16
13 C -0.21 -3.68 9.98 -39.38 -0.39 -4.07 16
14 C 0.12 2.34 5.19 -39.24 -0.20 2.14 16
15 O -0.29 -4.97 9.94 -24.96 -0.25 -5.22 16
16 C 0.54 9.02 7.82 34.39 0.27 9.29 16
17 O -0.47 -9.35 15.28 -19.29 -0.29 -9.65 16
18 C -0.23 -3.13 6.47 -102.91 -0.67 -3.79 16
19 C 0.03 0.24 12.24 30.44 0.37 0.61 16
20 O 0.10 1.01 11.06 18.69 0.21 1.22 16
21 N -0.36 -4.40 11.71 34.79 0.41 -3.99 16
22 C 0.11 1.46 7.08 -79.76 -0.56 0.89 16
23 C -0.09 -1.15 5.89 -91.77 -0.54 -1.69 16
24 C -0.16 -1.61 10.17 -26.70 -0.27 -1.88 16
25 C -0.16 -1.57 10.24 -26.69 -0.27 -1.84 16
26 C -0.23 -5.17 8.59 -39.25 -0.34 -5.51 16
27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16
28 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16
29 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16
30 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16
31 H 0.24 1.18 8.06 -52.49 -0.42 0.76 16
32 H 0.14 1.95 7.29 -51.92 -0.38 1.57 16
33 H 0.10 1.01 7.97 -51.93 -0.41 0.59 16
34 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16
35 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16
36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16
37 H 0.13 3.10 5.64 -52.49 -0.30 2.81 16
LS Contribution 338.66 15.07 5.10 5.10
Total: -1.00 -32.89 338.66 -6.01 -38.90
By element:
Atomic # 1 Polarization: 7.97 SS G_CDS: -3.46 Total: 4.51 kcal
Atomic # 6 Polarization: -14.07 SS G_CDS: -3.46 Total: -17.53 kcal
Atomic # 7 Polarization: -29.36 SS G_CDS: 1.17 Total: -28.20 kcal
Atomic # 8 Polarization: -18.11 SS G_CDS: -0.34 Total: -18.44 kcal
Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -32.89 -6.01 -38.90 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000842427599.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.567 kcal
(2) G-P(sol) polarization free energy of solvation -32.892 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.675 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds