Wall clock time and date at job start Tue Mar 31 2020 11:27:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31554 * 1
3 3 Si 1.86804 * 120.00054 * 2 1
4 4 H 1.48501 * 109.47208 * 270.00506 * 3 2 1
5 5 H 1.48503 * 109.46778 * 30.00715 * 3 2 1
6 6 H 1.48501 * 109.47040 * 150.00170 * 3 2 1
7 7 C 1.38656 * 120.00364 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00663 * 179.97438 * 7 2 1
9 9 O 1.34838 * 119.99717 * 359.97438 * 7 2 1
10 10 C 1.35745 * 116.99964 * 185.06247 * 9 7 2
11 11 C 1.38935 * 120.04147 * 174.12975 * 10 9 7
12 12 C 1.38114 * 120.04413 * 179.71951 * 11 10 9
13 13 C 1.38233 * 120.12052 * 0.55819 * 12 11 10
14 14 C 1.38779 * 120.08197 * 359.71934 * 13 12 11
15 15 O 1.35916 * 120.02092 * 180.02562 * 14 13 12
16 16 C 1.34783 * 116.99605 * 255.26318 * 15 14 13
17 17 O 1.21536 * 120.00652 * 355.01756 * 16 15 14
18 18 C 1.47254 * 119.99937 * 175.01092 * 16 15 14
19 19 C 1.37441 * 128.57050 * 0.02689 * 18 16 15
20 20 O 1.33477 * 106.32647 * 179.97438 * 19 18 16
21 21 N 1.20655 * 113.17094 * 0.02562 * 20 19 18
22 22 C 1.29996 * 112.32295 * 359.69000 * 21 20 19
23 23 C 1.50701 * 127.33523 * 180.29424 * 22 21 20
24 24 C 1.52998 * 117.50216 * 8.94613 * 23 22 21
25 25 C 1.53000 * 117.50024 * 300.28571 * 23 22 21
26 26 C 1.38624 * 119.95804 * 0.02562 * 14 13 12
27 27 H 0.96993 * 120.00126 * 359.97438 * 1 2 3
28 28 H 1.08007 * 119.97616 * 359.97438 * 11 10 9
29 29 H 1.07995 * 119.94048 * 180.25668 * 12 11 10
30 30 H 1.07995 * 119.95628 * 179.70283 * 13 12 11
31 31 H 1.07999 * 126.83886 * 359.97130 * 19 18 16
32 32 H 1.09008 * 115.54776 * 154.61243 * 23 22 21
33 33 H 1.09001 * 117.49669 * 359.97438 * 24 23 22
34 34 H 1.08999 * 117.50443 * 145.01876 * 24 23 22
35 35 H 1.09004 * 117.49851 * 214.97600 * 25 23 22
36 36 H 1.08995 * 117.49878 * 359.97270 * 25 23 22
37 37 H 1.07999 * 120.05879 * 180.02562 * 26 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2496 1.6178 0.0000
4 1 2.4970 2.0465 -1.4001
5 1 1.4470 2.6526 0.7002
6 1 3.5472 1.4402 0.7000
7 6 2.0089 -1.2008 -0.0005
8 1 3.0889 -1.2008 -0.0010
9 8 1.3347 -2.3685 -0.0005
10 6 2.0700 -3.5046 0.1057
11 6 1.4359 -4.7340 0.2349
12 6 2.1839 -5.8905 0.3371
13 6 3.5647 -5.8272 0.3227
14 6 4.2035 -4.6013 0.1997
15 8 5.5612 -4.5405 0.1851
16 6 6.1658 -4.0971 1.3052
17 8 5.4984 -3.6884 2.2351
18 6 7.6351 -4.1079 1.4023
19 6 8.5526 -4.5265 0.4685
20 8 9.7560 -4.3411 1.0155
21 7 9.7053 -3.8786 2.1287
22 6 8.4839 -3.6675 2.5206
23 6 8.0333 -3.0968 3.8405
24 6 9.1078 -2.5211 4.7651
25 6 8.4334 -3.8512 5.1100
26 6 3.4560 -3.4389 0.0915
27 1 -0.4850 0.8400 0.0004
28 1 0.3572 -4.7857 0.2513
29 1 1.6892 -6.8457 0.4334
30 1 4.1470 -6.7327 0.4077
31 1 8.3419 -4.9259 -0.5125
32 1 7.0603 -2.6054 3.8326
33 1 10.1408 -2.5556 4.4188
34 1 8.8418 -1.6513 5.3658
35 1 7.7239 -3.8559 5.9375
36 1 9.0222 -4.7606 4.9905
37 1 3.9514 -2.4841 -0.0048
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000842427599.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:27:52
Heat of formation + Delta-G solvation = 0.424885 kcal
Electronic energy + Delta-G solvation = -25054.147851 eV
Core-core repulsion = 21152.891845 eV
Total energy + Delta-G solvation = -3901.256006 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.098 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-46.16048 -42.31460 -40.56979 -38.84288 -38.37129 -37.36163 -34.54457 -34.34651
-33.19558 -31.39216 -30.65955 -27.60221 -26.94559 -25.47725 -24.11039 -23.43801
-23.33599 -22.12851 -21.39576 -20.13128 -19.69218 -19.30634 -18.90628 -18.10257
-17.66902 -17.38666 -16.88612 -16.54323 -16.19954 -15.94860 -15.91425 -15.61235
-15.19422 -14.74024 -14.56283 -14.40734 -13.76066 -13.33502 -13.20250 -13.05319
-12.89109 -12.77077 -12.64653 -12.58402 -12.43216 -12.21563 -12.08140 -11.96299
-11.53182 -11.45914 -11.04618 -10.87610 -10.66892 -9.84449 -9.17907 -8.54875
-6.24002 -0.27752 0.06733 0.46706 0.53455 1.28718 1.34545 1.40414
1.45756 1.59032 2.08233 2.11253 2.64777 2.70936 2.81416 3.02252
3.04421 3.37041 3.59101 3.73373 3.80584 3.93569 3.96206 3.98418
4.17492 4.29898 4.49315 4.51734 4.55406 4.62164 4.74953 4.85291
4.91747 4.99756 5.02212 5.10436 5.28547 5.38185 5.47051 5.52378
5.92279 5.95528 6.58151 6.89193 7.01636 7.64354 8.67407
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.011760 B = 0.003959 C = 0.003340
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2380.293094 B = 7070.667291 C = 8381.903149
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C -0.014 4.014
3 Si 1.012 2.988
4 H -0.257 1.257
5 H -0.264 1.264
6 H -0.263 1.263
7 C -0.418 4.418
8 H 0.090 0.910
9 O -0.220 6.220
10 C 0.126 3.874
11 C -0.190 4.190
12 C -0.048 4.048
13 C -0.184 4.184
14 C 0.113 3.887
15 O -0.280 6.280
16 C 0.540 3.460
17 O -0.510 6.510
18 C -0.276 4.276
19 C 0.076 3.924
20 O 0.108 5.892
21 N -0.365 5.365
22 C 0.101 3.899
23 C -0.123 4.123
24 C -0.148 4.148
25 C -0.145 4.145
26 C -0.245 4.245
27 H 0.276 0.724
28 H 0.131 0.869
29 H 0.177 0.823
30 H 0.160 0.840
31 H 0.285 0.715
32 H 0.116 0.884
33 H 0.103 0.897
34 H 0.119 0.881
35 H 0.117 0.883
36 H 0.100 0.900
37 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.956 -11.310 2.975 22.273
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.212 4.212
3 Si 0.831 3.169
4 H -0.181 1.181
5 H -0.188 1.188
6 H -0.188 1.188
7 C -0.493 4.493
8 H 0.108 0.892
9 O -0.126 6.126
10 C 0.075 3.925
11 C -0.209 4.209
12 C -0.066 4.066
13 C -0.203 4.203
14 C 0.072 3.928
15 O -0.195 6.195
16 C 0.386 3.614
17 O -0.397 6.397
18 C -0.281 4.281
19 C -0.006 4.006
20 O 0.051 5.949
21 N -0.072 5.072
22 C -0.061 4.061
23 C -0.142 4.142
24 C -0.185 4.185
25 C -0.183 4.183
26 C -0.265 4.265
27 H 0.085 0.915
28 H 0.149 0.851
29 H 0.195 0.805
30 H 0.178 0.822
31 H 0.300 0.700
32 H 0.134 0.866
33 H 0.122 0.878
34 H 0.137 0.863
35 H 0.135 0.865
36 H 0.119 0.881
37 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 19.549 -10.815 3.745 22.653
hybrid contribution -1.096 1.168 -0.301 1.629
sum 18.454 -9.647 3.444 21.106
Atomic orbital electron populations
1.70144 1.07717 1.29033 1.47983 1.26474 0.96859 1.02361 0.95540
0.84699 0.77618 0.75005 0.79597 1.18139 1.18832 1.18767 1.21667
0.92049 0.81608 1.54023 0.89228 1.83956 1.35323 1.12359 1.81007
1.19695 0.90162 0.88718 0.93875 1.20746 1.01039 0.89964 1.09171
1.21093 0.92403 0.98023 0.95048 1.21123 0.95277 0.96153 1.07745
1.18329 0.79253 0.93663 1.01579 1.84520 1.19439 1.77602 1.37945
1.20204 0.87442 0.73914 0.79860 1.90911 1.66464 1.43349 1.39007
1.21048 0.90629 1.17506 0.98959 1.27477 0.81394 0.91723 1.00009
1.84599 1.30268 1.58747 1.21262 1.73649 1.19942 1.16801 0.96842
1.23977 0.87101 0.98345 0.96675 1.20419 1.01194 1.07057 0.85519
1.23132 0.96951 0.98070 1.00334 1.23127 1.03062 0.96379 0.95750
1.21189 0.94178 0.98575 1.12581 0.91504 0.85086 0.80539 0.82207
0.69971 0.86556 0.87810 0.86302 0.86474 0.88110 0.87265
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -55.90 13.67 21.61 0.30 -55.60 16
2 C -0.01 -0.78 5.49 84.83 0.47 -0.32 16
3 Si 1.01 44.08 29.55 68.60 2.03 46.10 16
4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16
5 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16
6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16
7 C -0.42 -25.10 9.49 67.92 0.64 -24.45 16
8 H 0.09 5.16 5.20 -2.91 -0.02 5.14 16
9 O -0.22 -13.39 9.76 -22.77 -0.22 -13.61 16
10 C 0.13 6.39 6.65 22.56 0.15 6.54 16
11 C -0.19 -7.74 9.99 22.41 0.22 -7.51 16
12 C -0.05 -1.48 10.03 22.24 0.22 -1.25 16
13 C -0.18 -5.76 9.98 22.40 0.22 -5.53 16
14 C 0.11 4.30 5.19 22.49 0.12 4.42 16
15 O -0.28 -9.11 9.94 -0.57 -0.01 -9.11 16
16 C 0.54 17.91 7.82 70.19 0.55 18.46 16
17 O -0.51 -21.03 15.28 19.72 0.30 -20.73 16
18 C -0.28 -6.94 6.47 -18.76 -0.12 -7.06 16
19 C 0.08 1.14 12.24 67.63 0.83 1.97 16
20 O 0.11 1.90 11.06 77.13 0.85 2.75 16
21 N -0.36 -8.30 11.71 -44.75 -0.52 -8.83 16
22 C 0.10 2.58 7.08 45.17 0.32 2.90 16
23 C -0.12 -3.06 5.89 -11.54 -0.07 -3.13 16
24 C -0.15 -2.78 10.17 30.62 0.31 -2.47 16
25 C -0.15 -2.78 10.24 30.62 0.31 -2.47 16
26 C -0.25 -11.54 8.59 22.49 0.19 -11.35 16
27 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16
28 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16
29 H 0.18 3.63 8.06 -2.91 -0.02 3.61 16
30 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16
31 H 0.29 1.24 8.06 -2.91 -0.02 1.22 16
32 H 0.12 3.45 7.29 -2.38 -0.02 3.43 16
33 H 0.10 1.91 7.97 -2.39 -0.02 1.89 16
34 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16
35 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16
36 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16
37 H 0.11 5.52 5.64 -2.91 -0.02 5.50 16
Total: -1.00 -79.14 338.66 8.23 -70.91
By element:
Atomic # 1 Polarization: 18.24 SS G_CDS: 1.13 Total: 19.37 kcal
Atomic # 6 Polarization: -35.62 SS G_CDS: 4.37 Total: -31.25 kcal
Atomic # 7 Polarization: -64.20 SS G_CDS: -0.23 Total: -64.43 kcal
Atomic # 8 Polarization: -41.62 SS G_CDS: 0.93 Total: -40.70 kcal
Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal
Total: -79.14 8.23 -70.91 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000842427599.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.332 kcal
(2) G-P(sol) polarization free energy of solvation -79.135 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.803 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.228 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.908 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.425 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds