Wall clock time and date at job start Tue Mar 31 2020 11:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99960 * 2 1 4 4 H 1.48496 * 109.47197 * 240.00132 * 3 2 1 5 5 H 1.48497 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46881 * 120.00199 * 3 2 1 7 7 C 1.37871 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00144 * 183.13493 * 7 2 1 9 9 C 1.50701 * 120.00084 * 3.12957 * 7 2 1 10 10 C 1.52994 * 115.55163 * 324.97266 * 9 7 2 11 11 O 1.45201 * 109.47237 * 305.29311 * 10 9 7 12 12 C 1.34711 * 117.00103 * 184.86831 * 11 10 9 13 13 O 1.21470 * 120.00098 * 5.09579 * 12 11 10 14 14 C 1.47721 * 120.00132 * 185.10478 * 12 11 10 15 15 C 1.39617 * 120.56197 * 354.74236 * 14 12 11 16 16 N 1.31658 * 120.55488 * 179.97438 * 15 14 12 17 17 C 1.31958 * 121.88379 * 359.97438 * 16 15 14 18 18 C 1.38311 * 121.09962 * 0.02562 * 17 16 15 19 19 C 1.38390 * 119.30577 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.85791 * 179.97438 * 19 18 17 21 21 F 1.39904 * 109.47229 * 359.97438 * 20 19 18 22 22 F 1.39892 * 109.47519 * 119.99919 * 20 19 18 23 23 F 1.39908 * 109.47110 * 240.00327 * 20 19 18 24 24 C 1.53001 * 117.50053 * 110.64269 * 9 7 2 25 25 C 1.53008 * 117.49855 * 179.30452 * 9 7 2 26 26 H 0.97006 * 120.00198 * 5.00784 * 1 2 3 27 27 H 1.08993 * 109.47788 * 185.28855 * 10 9 7 28 28 H 1.09006 * 109.46948 * 65.28919 * 10 9 7 29 29 H 1.08002 * 119.72198 * 359.95736 * 15 14 12 30 30 H 1.08011 * 119.44872 * 180.02562 * 17 16 15 31 31 H 1.07997 * 120.34978 * 179.72597 * 18 17 16 32 32 H 1.08997 * 117.50490 * 215.00341 * 24 9 7 33 33 H 1.09003 * 117.49472 * 0.02896 * 24 9 7 34 34 H 1.08995 * 117.49645 * 359.97242 * 25 9 7 35 35 H 1.08994 * 117.49612 * 144.97506 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0833 -1.1948 0.0506 9 6 1.2527 -2.4981 -0.0724 10 6 -0.0921 -2.5256 0.6566 11 8 0.0991 -2.1287 2.0402 12 6 -0.9751 -2.1971 2.8502 13 8 -2.0178 -2.6645 2.4380 14 6 -0.8852 -1.7036 4.2396 15 6 0.3341 -1.2653 4.7598 16 7 0.4139 -0.8250 5.9980 17 6 -0.6400 -0.7787 6.7906 18 6 -1.8836 -1.1947 6.3507 19 6 -2.0216 -1.6663 5.0570 20 6 -3.3599 -2.1290 4.5416 21 9 -4.3208 -1.9911 5.5492 22 9 -3.7276 -1.3538 3.4367 23 9 -3.2739 -3.4725 4.1608 24 6 1.3743 -3.3136 -1.3612 25 6 2.0754 -3.7881 -0.0858 26 1 -0.4851 0.8369 -0.0733 27 1 -0.5040 -3.5341 0.6216 28 1 -0.7821 -1.8343 0.1724 29 1 1.2192 -1.2879 4.1413 30 1 -0.5297 -0.4097 7.7997 31 1 -2.7372 -1.1556 7.0112 32 1 0.4963 -3.8697 -1.6898 33 1 1.9985 -2.9071 -2.1569 34 1 3.1604 -3.6934 -0.0431 35 1 1.6587 -4.6560 0.4251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847653892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:00 Heat of formation + Delta-G solvation = -175.455571 kcal Electronic energy + Delta-G solvation = -27072.390435 eV Core-core repulsion = 22621.650940 eV Total energy + Delta-G solvation = -4450.739495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.21858 -48.76108 -48.63006 -41.92960 -40.66926 -38.57691 -36.89991 -34.58876 -34.19069 -32.98076 -28.80208 -27.86461 -27.35622 -25.76540 -23.87443 -23.03290 -22.28519 -21.10602 -19.96103 -19.57618 -19.52938 -18.75431 -18.58809 -17.64051 -17.31004 -16.90669 -16.55274 -16.50770 -15.86178 -15.64103 -15.49122 -15.28753 -15.12926 -15.05820 -14.88492 -14.80351 -14.67856 -13.93721 -13.84953 -13.56174 -13.37383 -13.30850 -12.92252 -12.74536 -12.33454 -12.14113 -11.93457 -11.53720 -11.47018 -11.34345 -10.92494 -10.83525 -10.69209 -10.52174 -10.17294 -8.00284 -6.19083 -0.89276 -0.35357 1.35074 1.42511 1.44722 1.45925 1.52933 1.74654 2.41656 2.43211 2.51416 2.85594 3.01544 3.16849 3.26969 3.47620 3.51837 3.61469 3.75766 4.06477 4.21697 4.27721 4.37634 4.49900 4.58254 4.67879 4.78091 4.91053 4.97256 5.18282 5.25771 5.42828 5.51515 5.66711 5.84594 6.32381 6.52735 6.70998 6.84946 7.45109 8.92734 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.005153 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.261990 B = 5432.600404 C = 6110.227996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.032 3.968 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.493 4.493 8 H 0.059 0.941 9 C 0.005 3.995 10 C 0.132 3.868 11 O -0.319 6.319 12 C 0.491 3.509 13 O -0.528 6.528 14 C -0.146 4.146 15 C 0.164 3.836 16 N -0.479 5.479 17 C 0.148 3.852 18 C -0.120 4.120 19 C -0.099 4.099 20 C 0.513 3.487 21 F -0.165 7.165 22 F -0.179 7.179 23 F -0.172 7.172 24 C -0.186 4.186 25 C -0.188 4.188 26 H 0.258 0.742 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.177 0.823 30 H 0.228 0.772 31 H 0.198 0.802 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 -1.699 15.261 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.168 4.168 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.004 3.996 10 C 0.059 3.941 11 O -0.233 6.233 12 C 0.335 3.665 13 O -0.421 6.421 14 C -0.150 4.150 15 C 0.008 3.992 16 N -0.187 5.187 17 C -0.010 4.010 18 C -0.139 4.139 19 C -0.109 4.109 20 C 0.459 3.541 21 F -0.146 7.146 22 F -0.161 7.161 23 F -0.154 7.154 24 C -0.224 4.224 25 C -0.225 4.225 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.108 0.892 29 H 0.194 0.806 30 H 0.244 0.756 31 H 0.215 0.785 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.640 -1.455 15.442 15.931 hybrid contribution -0.889 0.255 -1.268 1.569 sum -4.529 -1.200 14.174 14.928 Atomic orbital electron populations 1.69933 1.06980 1.27021 1.50541 1.25586 0.95469 1.01877 0.93848 0.85712 0.78402 0.79178 0.78996 1.19664 1.21508 1.19346 1.20659 0.92520 0.89561 1.50248 0.92310 1.19088 0.92994 0.91412 0.96072 1.22711 0.99174 0.96179 0.76069 1.86485 1.35930 1.77296 1.23600 1.21246 0.82362 0.75892 0.86989 1.90818 1.30714 1.43517 1.77008 1.20032 0.96692 1.06330 0.91929 1.23330 0.95826 0.88324 0.91747 1.67943 1.33741 1.13080 1.03973 1.24082 0.85778 0.90005 1.01103 1.22538 1.02620 0.96105 0.92618 1.20701 0.91246 1.01695 0.97219 1.17984 0.84908 0.75787 0.75425 1.93175 1.66082 1.95576 1.59791 1.93232 1.92561 1.75079 1.55200 1.93227 1.96330 1.34317 1.91485 1.23006 1.02173 1.05092 0.92112 1.22980 0.98862 0.98709 1.01933 0.93231 0.95416 0.89191 0.80617 0.75576 0.78502 0.90126 0.89594 0.89422 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.05 10.19 21.44 0.22 -49.83 16 2 C 0.03 1.68 5.35 84.65 0.45 2.14 16 3 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.49 -25.89 8.80 25.60 0.23 -25.66 16 8 H 0.06 3.04 7.82 -2.91 -0.02 3.02 16 9 C 0.00 0.23 2.20 -52.93 -0.12 0.11 16 10 C 0.13 6.56 4.45 71.98 0.32 6.88 16 11 O -0.32 -15.21 9.08 -56.21 -0.51 -15.72 16 12 C 0.49 21.38 7.72 70.33 0.54 21.92 16 13 O -0.53 -24.77 11.30 19.93 0.23 -24.55 16 14 C -0.15 -5.04 5.87 -20.00 -0.12 -5.16 16 15 C 0.16 5.01 10.79 85.05 0.92 5.93 16 16 N -0.48 -11.76 10.35 -194.70 -2.01 -13.77 16 17 C 0.15 2.34 11.17 84.69 0.95 3.29 16 18 C -0.12 -2.09 9.49 22.32 0.21 -1.88 16 19 C -0.10 -2.81 5.43 -19.39 -0.11 -2.92 16 20 C 0.51 16.11 2.78 71.24 0.20 16.30 16 21 F -0.16 -4.03 16.08 44.97 0.72 -3.31 16 22 F -0.18 -6.80 15.33 44.97 0.69 -6.11 16 23 F -0.17 -6.13 14.96 44.97 0.67 -5.46 16 24 C -0.19 -7.93 9.96 30.62 0.30 -7.63 16 25 C -0.19 -7.71 9.93 30.62 0.30 -7.41 16 26 H 0.26 13.93 8.32 -92.70 -0.77 13.16 16 27 H 0.03 1.32 7.92 -2.39 -0.02 1.30 16 28 H 0.09 5.03 5.89 -2.38 -0.01 5.02 16 29 H 0.18 5.68 7.64 -2.91 -0.02 5.66 16 30 H 0.23 1.13 8.06 -2.90 -0.02 1.10 16 31 H 0.20 1.85 7.26 -2.91 -0.02 1.83 16 32 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 34 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 35 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -65.44 317.56 7.27 -58.18 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.15 Total: 10.51 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 4.09 Total: 5.92 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -1.80 Total: -63.61 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -0.29 Total: -40.27 kcal Atomic # 9 Polarization: -16.96 SS G_CDS: 2.09 Total: -14.88 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -65.44 7.27 -58.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847653892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.280 kcal (2) G-P(sol) polarization free energy of solvation -65.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds