Wall clock time and date at job start Tue Mar 31 2020 11:30:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86807 * 120.00063 * 2 1
4 4 H 1.48494 * 109.47049 * 270.00362 * 3 2 1
5 5 H 1.48500 * 109.46712 * 29.99758 * 3 2 1
6 6 H 1.48492 * 109.47130 * 149.99694 * 3 2 1
7 7 C 1.37877 * 120.00071 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99822 * 172.23724 * 7 2 1
9 9 C 1.50700 * 120.00296 * 352.22982 * 7 2 1
10 10 C 1.53001 * 115.54526 * 84.78556 * 9 7 2
11 11 S 1.81396 * 109.47170 * 65.19917 * 10 9 7
12 12 O 1.42105 * 110.54224 * 62.18378 * 11 10 9
13 13 O 1.42101 * 110.54280 * 285.43044 * 11 10 9
14 14 N 1.65601 * 104.44938 * 173.80890 * 11 10 9
15 15 C 1.46502 * 119.99922 * 64.99727 * 14 11 10
16 16 C 1.53004 * 109.46894 * 165.00128 * 15 14 11
17 17 H 1.08996 * 109.47053 * 60.00136 * 16 15 14
18 18 O 1.42902 * 109.46961 * 299.99936 * 16 15 14
19 19 C 1.50695 * 109.46912 * 180.02562 * 16 15 14
20 20 C 1.34517 * 125.79252 * 264.99697 * 19 16 15
21 21 C 1.41383 * 106.84145 * 180.02562 * 20 19 16
22 22 C 1.34505 * 106.84227 * 0.02562 * 21 20 19
23 23 O 1.34305 * 108.42400 * 359.73430 * 22 21 20
24 24 C 1.52995 * 117.49818 * 230.45981 * 9 7 2
25 25 C 1.52997 * 117.49540 * 299.11876 * 9 7 2
26 26 H 0.96996 * 120.00394 * 5.03353 * 1 2 3
27 27 H 1.09004 * 109.47149 * 305.19452 * 10 9 7
28 28 H 1.08999 * 109.46721 * 185.19869 * 10 9 7
29 29 H 0.97002 * 120.00123 * 244.72503 * 14 11 10
30 30 H 1.08990 * 109.47202 * 284.99982 * 15 14 11
31 31 H 1.08996 * 109.47159 * 45.00330 * 15 14 11
32 32 H 0.96703 * 114.00079 * 300.00145 * 18 16 15
33 33 H 1.08003 * 126.57198 * 0.04218 * 20 19 16
34 34 H 1.07997 * 126.57423 * 179.97438 * 21 20 19
35 35 H 1.08005 * 125.79064 * 180.02562 * 22 21 20
36 36 H 1.09006 * 117.49112 * 215.00088 * 24 9 7
37 37 H 1.08999 * 117.50180 * 0.02562 * 24 9 7
38 38 H 1.08998 * 117.50418 * 359.97438 * 25 9 7
39 39 H 1.09005 * 117.49846 * 144.96995 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4465 2.6527 0.7000
6 1 3.5466 1.4402 0.7001
7 6 2.0045 -1.1940 -0.0005
8 1 3.0771 -1.1982 -0.1269
9 6 1.2615 -2.4933 0.1753
10 6 0.6671 -3.0914 -1.1013
11 16 2.0073 -3.5623 -2.2294
12 8 2.8269 -4.5624 -1.6400
13 8 2.5780 -2.4100 -2.8342
14 7 1.2440 -4.3417 -3.4753
15 6 0.3179 -3.6073 -4.3410
16 6 0.0449 -4.4246 -5.6053
17 1 -0.3967 -5.3824 -5.3305
18 8 1.2724 -4.6484 -6.3021
19 6 -0.9072 -3.6690 -6.4960
20 6 -2.2427 -3.8256 -6.5323
21 6 -2.7347 -2.9236 -7.5035
22 6 -1.6704 -2.2701 -8.0030
23 8 -0.5667 -2.7217 -7.3852
24 6 1.7805 -3.4659 1.2362
25 6 0.4827 -2.6910 1.4773
26 1 -0.4850 0.8367 -0.0737
27 1 0.0275 -2.3530 -1.5850
28 1 0.0777 -3.9730 -0.8492
29 1 1.4131 -5.2835 -3.6344
30 1 -0.6182 -3.4367 -3.8095
31 1 0.7595 -2.6495 -4.6158
32 1 1.7216 -3.8376 -6.5778
33 1 -2.8270 -4.5091 -5.9341
34 1 -3.7669 -2.7863 -7.7900
35 1 -1.6990 -1.5078 -8.7676
36 1 1.6985 -4.5321 1.0245
37 1 2.6592 -3.1659 1.8072
38 1 0.5081 -1.8815 2.2069
39 1 -0.4534 -3.2469 1.4244
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000849375773.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:01
Heat of formation + Delta-G solvation = -81.738271 kcal
Electronic energy + Delta-G solvation = -24623.246701 eV
Core-core repulsion = 20853.871784 eV
Total energy + Delta-G solvation = -3769.374917 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.102 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-42.78035 -37.96517 -36.76962 -36.24941 -35.10940 -34.35411 -33.23164 -32.05944
-30.88108 -28.18805 -27.32468 -25.46934 -23.32610 -21.96580 -21.22757 -20.82110
-19.73771 -18.77273 -18.16697 -17.26871 -16.68264 -16.34390 -16.08700 -15.71667
-15.38658 -15.04518 -14.72721 -14.46437 -14.20150 -13.75012 -13.55922 -13.14560
-13.03640 -12.90589 -12.57934 -11.97462 -11.84285 -11.77798 -11.55314 -11.29785
-11.16246 -11.02947 -10.95253 -10.59353 -10.53184 -10.46908 -10.14241 -10.10675
-9.76513 -9.28660 -8.97072 -8.69693 -8.57885 -8.11131 -6.15776 -4.26144
1.02263 1.50515 2.40954 2.70157 3.29649 3.35250 3.40526 3.43538
4.13726 4.32060 4.36014 4.51130 4.60601 4.77578 4.86185 4.94674
5.04583 5.13102 5.19742 5.43202 5.51316 5.56451 5.65685 5.76102
5.84738 5.93842 6.02369 6.24266 6.27137 6.35358 6.59105 6.71088
6.87885 6.96720 7.17952 7.24586 7.36972 7.37824 7.78891 8.18792
8.79462 9.45115 10.91903
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.014170 B = 0.004310 C = 0.003800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1975.582131 B = 6495.636999 C = 7366.137530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.875 5.875
2 C 0.082 3.918
3 Si 0.891 3.109
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.269 1.269
7 C -0.516 4.516
8 H 0.069 0.931
9 C 0.042 3.958
10 C -0.555 4.555
11 S 2.608 3.392
12 O -0.971 6.971
13 O -0.950 6.950
14 N -1.127 6.127
15 C 0.086 3.914
16 C 0.191 3.809
17 H 0.132 0.868
18 O -0.547 6.547
19 C -0.046 4.046
20 C -0.197 4.197
21 C -0.215 4.215
22 C -0.035 4.035
23 O -0.170 6.170
24 C -0.208 4.208
25 C -0.141 4.141
26 H 0.263 0.737
27 H 0.133 0.867
28 H 0.100 0.900
29 H 0.413 0.587
30 H 0.079 0.921
31 H 0.088 0.912
32 H 0.387 0.613
33 H 0.151 0.849
34 H 0.149 0.851
35 H 0.204 0.796
36 H 0.075 0.925
37 H 0.086 0.914
38 H 0.086 0.914
39 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.574 -7.424 -12.835 16.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.511 5.511
2 C -0.123 4.123
3 Si 0.718 3.282
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.194 1.194
7 C -0.553 4.553
8 H 0.087 0.913
9 C 0.040 3.960
10 C -0.688 4.688
11 S 2.705 3.295
12 O -0.962 6.962
13 O -0.940 6.940
14 N -0.884 5.884
15 C -0.041 4.041
16 C 0.130 3.870
17 H 0.150 0.850
18 O -0.352 6.352
19 C -0.098 4.098
20 C -0.216 4.216
21 C -0.234 4.234
22 C -0.103 4.103
23 O -0.066 6.066
24 C -0.245 4.245
25 C -0.180 4.180
26 H 0.073 0.927
27 H 0.151 0.849
28 H 0.118 0.882
29 H 0.246 0.754
30 H 0.097 0.903
31 H 0.107 0.893
32 H 0.235 0.765
33 H 0.169 0.831
34 H 0.167 0.833
35 H 0.220 0.780
36 H 0.094 0.906
37 H 0.105 0.895
38 H 0.104 0.896
39 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -5.676 -7.478 -12.660 15.761
hybrid contribution -0.740 1.195 -0.102 1.409
sum -6.416 -6.283 -12.762 15.605
Atomic orbital electron populations
1.69972 1.06049 1.27192 1.47861 1.24949 0.94796 0.99225 0.93303
0.86583 0.80165 0.82806 0.78660 1.20060 1.21074 1.19387 1.20526
0.93710 0.88582 1.52455 0.91338 1.18280 0.99050 0.94371 0.84307
1.29986 1.16543 1.08493 1.13753 1.05139 0.76416 0.73704 0.74193
1.93512 1.65364 1.59443 1.77880 1.93532 1.74899 1.50988 1.74534
1.55879 1.62124 1.22860 1.47556 1.21942 0.94621 0.96192 0.91362
1.20657 0.82242 0.97120 0.86958 0.85016 1.86554 1.35403 1.36791
1.76477 1.23206 0.95772 0.94477 0.96312 1.21633 0.93508 1.03789
1.02678 1.21848 1.00269 1.00476 1.00826 1.24105 0.83378 1.02107
1.00719 1.83993 1.35610 1.43929 1.43076 1.23200 0.98674 0.96046
1.06581 1.22553 0.92573 1.01042 1.01863 0.92739 0.84918 0.88176
0.75400 0.90262 0.89324 0.76473 0.83124 0.83291 0.77960 0.90641
0.89499 0.89582 0.91528
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -23.85 12.98 55.43 0.72 -23.13 16
2 C 0.08 2.23 5.38 -17.82 -0.10 2.13 16
3 Si 0.89 21.27 29.55 -169.99 -5.02 16.25 16
4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16
7 C -0.52 -14.00 8.18 -34.44 -0.28 -14.29 16
8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16
9 C 0.04 1.02 1.32 -155.66 -0.21 0.81 16
10 C -0.55 -11.35 5.93 37.16 0.22 -11.13 16
11 S 2.61 51.51 5.19 -107.50 -0.56 50.95 16
12 O -0.97 -21.11 18.08 -57.54 -1.04 -22.15 16
13 O -0.95 -22.23 17.17 -57.54 -0.99 -23.22 16
14 N -1.13 -16.10 5.75 -10.61 -0.06 -16.16 16
15 C 0.09 1.10 5.78 -4.04 -0.02 1.07 16
16 C 0.19 2.04 3.52 -27.88 -0.10 1.94 16
17 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16
18 O -0.55 -6.34 13.18 -39.94 -0.53 -6.86 16
19 C -0.05 -0.52 6.20 -35.63 -0.22 -0.74 16
20 C -0.20 -2.01 10.81 -39.70 -0.43 -2.44 16
21 C -0.22 -2.03 10.91 -39.71 -0.43 -2.46 16
22 C -0.04 -0.33 12.09 29.41 0.36 0.03 16
23 O -0.17 -1.98 10.52 0.97 0.01 -1.97 16
24 C -0.21 -4.53 9.96 -26.70 -0.27 -4.79 16
25 C -0.14 -3.18 9.49 -26.70 -0.25 -3.44 16
26 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16
27 H 0.13 2.80 8.14 -51.92 -0.42 2.38 16
28 H 0.10 1.71 8.09 -51.92 -0.42 1.29 16
29 H 0.41 5.04 8.61 -34.47 -0.30 4.75 16
30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
31 H 0.09 1.25 7.69 -51.93 -0.40 0.85 16
32 H 0.39 3.82 8.93 45.56 0.41 4.23 16
33 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16
34 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16
35 H 0.20 1.13 8.06 -52.48 -0.42 0.71 16
36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16
37 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16
38 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16
39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16
LS Contribution 353.94 15.07 5.33 5.33
Total: -1.00 -34.39 353.94 -8.35 -42.74
By element:
Atomic # 1 Polarization: 16.01 SS G_CDS: -4.48 Total: 11.53 kcal
Atomic # 6 Polarization: -31.58 SS G_CDS: -1.73 Total: -33.31 kcal
Atomic # 7 Polarization: -39.95 SS G_CDS: 0.66 Total: -39.29 kcal
Atomic # 8 Polarization: -51.66 SS G_CDS: -2.54 Total: -54.20 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Atomic # 16 Polarization: 51.51 SS G_CDS: -0.56 Total: 50.95 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -34.39 -8.35 -42.74 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000849375773.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.999 kcal
(2) G-P(sol) polarization free energy of solvation -34.391 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.738 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds