Wall clock time and date at job start Tue Mar 31 2020 11:30:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86807 * 120.00063 * 2 1
4 4 H 1.48494 * 109.47049 * 270.00362 * 3 2 1
5 5 H 1.48500 * 109.46712 * 29.99758 * 3 2 1
6 6 H 1.48492 * 109.47130 * 149.99694 * 3 2 1
7 7 C 1.37877 * 120.00071 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99822 * 172.23724 * 7 2 1
9 9 C 1.50700 * 120.00296 * 352.22982 * 7 2 1
10 10 C 1.53001 * 115.54526 * 84.78556 * 9 7 2
11 11 S 1.81396 * 109.47170 * 65.19917 * 10 9 7
12 12 O 1.42105 * 110.54224 * 62.18378 * 11 10 9
13 13 O 1.42101 * 110.54280 * 285.43044 * 11 10 9
14 14 N 1.65601 * 104.44938 * 173.80890 * 11 10 9
15 15 C 1.46502 * 119.99922 * 64.99727 * 14 11 10
16 16 C 1.53004 * 109.46894 * 165.00128 * 15 14 11
17 17 H 1.08996 * 109.47053 * 60.00136 * 16 15 14
18 18 O 1.42902 * 109.46961 * 299.99936 * 16 15 14
19 19 C 1.50695 * 109.46912 * 180.02562 * 16 15 14
20 20 C 1.34517 * 125.79252 * 264.99697 * 19 16 15
21 21 C 1.41383 * 106.84145 * 180.02562 * 20 19 16
22 22 C 1.34505 * 106.84227 * 0.02562 * 21 20 19
23 23 O 1.34305 * 108.42400 * 359.73430 * 22 21 20
24 24 C 1.52995 * 117.49818 * 230.45981 * 9 7 2
25 25 C 1.52997 * 117.49540 * 299.11876 * 9 7 2
26 26 H 0.96996 * 120.00394 * 5.03353 * 1 2 3
27 27 H 1.09004 * 109.47149 * 305.19452 * 10 9 7
28 28 H 1.08999 * 109.46721 * 185.19869 * 10 9 7
29 29 H 0.97002 * 120.00123 * 244.72503 * 14 11 10
30 30 H 1.08990 * 109.47202 * 284.99982 * 15 14 11
31 31 H 1.08996 * 109.47159 * 45.00330 * 15 14 11
32 32 H 0.96703 * 114.00079 * 300.00145 * 18 16 15
33 33 H 1.08003 * 126.57198 * 0.04218 * 20 19 16
34 34 H 1.07997 * 126.57423 * 179.97438 * 21 20 19
35 35 H 1.08005 * 125.79064 * 180.02562 * 22 21 20
36 36 H 1.09006 * 117.49112 * 215.00088 * 24 9 7
37 37 H 1.08999 * 117.50180 * 0.02562 * 24 9 7
38 38 H 1.08998 * 117.50418 * 359.97438 * 25 9 7
39 39 H 1.09005 * 117.49846 * 144.96995 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4465 2.6527 0.7000
6 1 3.5466 1.4402 0.7001
7 6 2.0045 -1.1940 -0.0005
8 1 3.0771 -1.1982 -0.1269
9 6 1.2615 -2.4933 0.1753
10 6 0.6671 -3.0914 -1.1013
11 16 2.0073 -3.5623 -2.2294
12 8 2.8269 -4.5624 -1.6400
13 8 2.5780 -2.4100 -2.8342
14 7 1.2440 -4.3417 -3.4753
15 6 0.3179 -3.6073 -4.3410
16 6 0.0449 -4.4246 -5.6053
17 1 -0.3967 -5.3824 -5.3305
18 8 1.2724 -4.6484 -6.3021
19 6 -0.9072 -3.6690 -6.4960
20 6 -2.2427 -3.8256 -6.5323
21 6 -2.7347 -2.9236 -7.5035
22 6 -1.6704 -2.2701 -8.0030
23 8 -0.5667 -2.7217 -7.3852
24 6 1.7805 -3.4659 1.2362
25 6 0.4827 -2.6910 1.4773
26 1 -0.4850 0.8367 -0.0737
27 1 0.0275 -2.3530 -1.5850
28 1 0.0777 -3.9730 -0.8492
29 1 1.4131 -5.2835 -3.6344
30 1 -0.6182 -3.4367 -3.8095
31 1 0.7595 -2.6495 -4.6158
32 1 1.7216 -3.8376 -6.5778
33 1 -2.8270 -4.5091 -5.9341
34 1 -3.7669 -2.7863 -7.7900
35 1 -1.6990 -1.5078 -8.7676
36 1 1.6985 -4.5321 1.0245
37 1 2.6592 -3.1659 1.8072
38 1 0.5081 -1.8815 2.2069
39 1 -0.4534 -3.2469 1.4244
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000849375773.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:00
Heat of formation + Delta-G solvation = -108.840242 kcal
Electronic energy + Delta-G solvation = -24624.421931 eV
Core-core repulsion = 20853.871784 eV
Total energy + Delta-G solvation = -3770.550146 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.102 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-43.52860 -38.88993 -38.55700 -37.91894 -36.79023 -35.46549 -34.08657 -33.99360
-31.71068 -29.84883 -28.24097 -27.48287 -24.25460 -22.98318 -22.70461 -21.71313
-21.39182 -20.25696 -19.06235 -18.60898 -18.34368 -17.64152 -16.92021 -16.83844
-16.77074 -16.54394 -16.43144 -15.81431 -15.39658 -15.33276 -14.88154 -14.42026
-13.81793 -13.74328 -13.71913 -13.62618 -13.35551 -13.12189 -13.04160 -12.90587
-12.87197 -12.86322 -12.60723 -12.43257 -12.21012 -11.90935 -11.56734 -11.46128
-10.87240 -10.84857 -10.57893 -10.52439 -9.87344 -9.44277 -8.19923 -6.34019
-0.53020 0.73750 1.37829 1.40408 1.48867 1.68587 1.89034 2.16867
2.39187 2.93912 3.07599 3.33236 3.39290 3.42616 3.60819 3.67414
3.98688 4.03118 4.16067 4.26548 4.31566 4.45729 4.52122 4.60068
4.67773 4.78948 4.85997 4.92499 4.99170 5.02342 5.16095 5.22304
5.47460 5.59616 5.59917 5.71645 6.13056 6.14901 6.22885 6.54463
6.71975 7.38185 8.87050
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.014170 B = 0.004310 C = 0.003800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1975.582131 B = 6495.636999 C = 7366.137530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.044 3.956
3 Si 0.933 3.067
4 H -0.278 1.278
5 H -0.273 1.273
6 H -0.270 1.270
7 C -0.534 4.534
8 H 0.048 0.952
9 C 0.009 3.991
10 C -0.552 4.552
11 S 2.626 3.374
12 O -0.993 6.993
13 O -0.994 6.994
14 N -1.107 6.107
15 C 0.080 3.920
16 C 0.200 3.800
17 H 0.157 0.843
18 O -0.558 6.558
19 C -0.070 4.070
20 C -0.199 4.199
21 C -0.228 4.228
22 C -0.041 4.041
23 O -0.191 6.191
24 C -0.197 4.197
25 C -0.138 4.138
26 H 0.265 0.735
27 H 0.124 0.876
28 H 0.137 0.863
29 H 0.426 0.574
30 H 0.096 0.904
31 H 0.069 0.931
32 H 0.391 0.609
33 H 0.170 0.830
34 H 0.170 0.830
35 H 0.234 0.766
36 H 0.100 0.900
37 H 0.081 0.919
38 H 0.065 0.935
39 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.007 -8.408 -13.516 17.818
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.159 4.159
3 Si 0.758 3.242
4 H -0.203 1.203
5 H -0.198 1.198
6 H -0.194 1.194
7 C -0.572 4.572
8 H 0.066 0.934
9 C 0.006 3.994
10 C -0.685 4.685
11 S 2.723 3.277
12 O -0.984 6.984
13 O -0.984 6.984
14 N -0.869 5.869
15 C -0.047 4.047
16 C 0.139 3.861
17 H 0.174 0.826
18 O -0.365 6.365
19 C -0.121 4.121
20 C -0.218 4.218
21 C -0.247 4.247
22 C -0.108 4.108
23 O -0.088 6.088
24 C -0.234 4.234
25 C -0.177 4.177
26 H 0.075 0.925
27 H 0.142 0.858
28 H 0.156 0.844
29 H 0.262 0.738
30 H 0.114 0.886
31 H 0.087 0.913
32 H 0.240 0.760
33 H 0.187 0.813
34 H 0.188 0.812
35 H 0.250 0.750
36 H 0.119 0.881
37 H 0.099 0.901
38 H 0.084 0.916
39 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -7.102 -8.471 -13.329 17.317
hybrid contribution -0.330 1.488 0.054 1.525
sum -7.432 -6.983 -13.275 16.740
Atomic orbital electron populations
1.70008 1.06560 1.27776 1.48431 1.25490 0.95601 1.01452 0.93352
0.85930 0.79410 0.80364 0.78451 1.20329 1.19813 1.19411 1.20703
0.93136 0.90682 1.52632 0.93400 1.18424 1.00388 0.94304 0.86253
1.29871 1.16746 1.09618 1.12253 1.04296 0.76182 0.72810 0.74388
1.93472 1.66488 1.59653 1.78770 1.93480 1.76227 1.53140 1.75504
1.55281 1.62034 1.23347 1.46206 1.22149 0.94504 0.95665 0.92395
1.20691 0.81999 0.97717 0.85668 0.82550 1.86527 1.35970 1.37384
1.76572 1.23305 0.96298 0.95328 0.97196 1.22010 0.93332 1.03851
1.02650 1.22225 1.01420 1.00335 1.00735 1.24851 0.82855 1.02287
1.00811 1.83980 1.36813 1.44372 1.43602 1.23251 0.98117 0.97008
1.05005 1.22515 0.93896 1.00821 1.00464 0.92543 0.85804 0.84437
0.73773 0.88562 0.91251 0.75977 0.81253 0.81218 0.74964 0.88139
0.90052 0.91631 0.89208
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -48.52 12.98 21.45 0.28 -48.24 16
2 C 0.04 2.39 5.38 84.65 0.46 2.85 16
3 Si 0.93 43.81 29.55 68.60 2.03 45.83 16
4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16
5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16
7 C -0.53 -29.38 8.18 25.60 0.21 -29.17 16
8 H 0.05 2.75 7.83 -2.91 -0.02 2.72 16
9 C 0.01 0.40 1.32 -52.93 -0.07 0.33 16
10 C -0.55 -21.85 5.93 71.98 0.43 -21.42 16
11 S 2.63 102.15 5.19 -56.49 -0.29 101.86 16
12 O -0.99 -42.25 18.08 -127.65 -2.31 -44.56 16
13 O -0.99 -47.31 17.17 -127.65 -2.19 -49.50 16
14 N -1.11 -29.97 5.75 -187.49 -1.08 -31.05 16
15 C 0.08 1.93 5.78 86.38 0.50 2.43 16
16 C 0.20 3.93 3.52 29.85 0.10 4.03 16
17 H 0.16 2.23 8.14 -2.39 -0.02 2.21 16
18 O -0.56 -12.36 13.18 -144.47 -1.90 -14.26 16
19 C -0.07 -1.48 6.20 24.83 0.15 -1.33 16
20 C -0.20 -3.66 10.81 22.19 0.24 -3.42 16
21 C -0.23 -3.84 10.91 22.19 0.24 -3.60 16
22 C -0.04 -0.70 12.09 66.96 0.81 0.11 16
23 O -0.19 -4.28 10.52 1.93 0.02 -4.26 16
24 C -0.20 -8.31 9.96 30.62 0.30 -8.01 16
25 C -0.14 -6.06 9.49 30.62 0.29 -5.77 16
26 H 0.27 13.73 8.32 -92.71 -0.77 12.96 16
27 H 0.12 5.14 8.14 -2.39 -0.02 5.12 16
28 H 0.14 4.28 8.09 -2.39 -0.02 4.26 16
29 H 0.43 9.49 8.61 -96.74 -0.83 8.66 16
30 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16
31 H 0.07 1.96 7.69 -2.39 -0.02 1.95 16
32 H 0.39 7.69 8.93 -74.06 -0.66 7.02 16
33 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16
34 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16
35 H 0.23 2.09 8.06 -2.91 -0.02 2.07 16
36 H 0.10 3.71 8.14 -2.38 -0.02 3.69 16
37 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16
38 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16
39 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16
Total: -1.00 -73.70 353.94 -2.19 -75.90
By element:
Atomic # 1 Polarization: 31.66 SS G_CDS: -0.41 Total: 31.24 kcal
Atomic # 6 Polarization: -66.63 SS G_CDS: 3.67 Total: -62.96 kcal
Atomic # 7 Polarization: -78.49 SS G_CDS: -0.80 Total: -79.29 kcal
Atomic # 8 Polarization: -106.20 SS G_CDS: -6.38 Total: -112.58 kcal
Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal
Atomic # 16 Polarization: 102.15 SS G_CDS: -0.29 Total: 101.86 kcal
Total: -73.70 -2.19 -75.90 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000849375773.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.941 kcal
(2) G-P(sol) polarization free energy of solvation -73.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.645 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.195 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.899 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.840 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds