Wall clock time and date at job start Tue Mar 31 2020 11:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00000 * 2 1 4 4 H 1.48502 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47219 * 299.99790 * 3 2 1 6 6 H 1.48495 * 109.46954 * 60.00131 * 3 2 1 7 7 C 1.37882 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99557 * 172.23308 * 7 2 1 9 9 C 1.50697 * 120.00315 * 352.23472 * 7 2 1 10 10 C 1.52999 * 115.55436 * 84.78292 * 9 7 2 11 11 S 1.81408 * 109.46898 * 65.19148 * 10 9 7 12 12 O 1.42099 * 110.53974 * 62.19117 * 11 10 9 13 13 O 1.42100 * 110.54269 * 285.44081 * 11 10 9 14 14 N 1.65601 * 104.44556 * 173.81256 * 11 10 9 15 15 C 1.46498 * 119.99879 * 65.00402 * 14 11 10 16 16 C 1.53000 * 109.47302 * 164.99397 * 15 14 11 17 17 H 1.09002 * 109.47586 * 305.00511 * 16 15 14 18 18 O 1.42906 * 109.46844 * 64.99967 * 16 15 14 19 19 C 1.50696 * 109.47373 * 184.99874 * 16 15 14 20 20 C 1.34518 * 125.78897 * 100.00319 * 19 16 15 21 21 C 1.41376 * 106.84309 * 180.02562 * 20 19 16 22 22 C 1.34518 * 106.84211 * 0.02562 * 21 20 19 23 23 O 1.34297 * 125.79221 * 280.02325 * 19 16 15 24 24 C 1.52998 * 117.49559 * 230.45560 * 9 7 2 25 25 C 1.52998 * 117.49646 * 299.11174 * 9 7 2 26 26 H 0.96997 * 120.00201 * 5.02432 * 1 2 3 27 27 H 1.09005 * 109.46625 * 305.20095 * 10 9 7 28 28 H 1.08995 * 109.47424 * 185.19307 * 10 9 7 29 29 H 0.96996 * 120.00244 * 244.99689 * 14 11 10 30 30 H 1.09010 * 109.47164 * 44.99846 * 15 14 11 31 31 H 1.09002 * 109.47225 * 284.99621 * 15 14 11 32 32 H 0.96698 * 113.99921 * 60.00280 * 18 16 15 33 33 H 1.08003 * 126.57523 * 359.97438 * 20 19 16 34 34 H 1.07994 * 126.58069 * 180.02562 * 21 20 19 35 35 H 1.07993 * 125.79576 * 179.97438 * 22 21 20 36 36 H 1.09006 * 117.49426 * 214.99924 * 24 9 7 37 37 H 1.09000 * 117.50348 * 0.02562 * 24 9 7 38 38 H 1.09002 * 117.50116 * 359.97438 * 25 9 7 39 39 H 1.09009 * 117.49951 * 144.97693 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0771 -1.1985 -0.1259 9 6 1.2614 -2.4931 0.1774 10 6 0.6669 -3.0925 -1.0986 11 16 2.0071 -3.5643 -2.2264 12 8 2.8267 -4.5639 -1.6362 13 8 2.5779 -2.4125 -2.8321 14 7 1.2438 -4.3448 -3.4716 15 6 0.3177 -3.6112 -4.3378 16 6 0.0447 -4.4294 -5.6015 17 1 0.9895 -4.6764 -6.0857 18 8 -0.6397 -5.6338 -5.2505 19 6 -0.8088 -3.6239 -6.5469 20 6 -0.3666 -2.9413 -7.6183 21 6 -1.4973 -2.3364 -8.2138 22 6 -2.5627 -2.6851 -7.4703 23 8 -2.1397 -3.4656 -6.4625 24 6 1.7804 -3.4649 1.2391 25 6 0.4826 -2.6897 1.4796 26 1 -0.4850 0.8368 -0.0736 27 1 0.0275 -2.3544 -1.5829 28 1 0.0776 -3.9738 -0.8458 29 1 1.4098 -5.2876 -3.6274 30 1 0.7594 -2.6535 -4.6135 31 1 -0.6185 -3.4400 -3.8065 32 1 -1.4907 -5.4898 -4.8144 33 1 0.6560 -2.8685 -7.9580 34 1 -1.5043 -1.7138 -9.0962 35 1 -3.5848 -2.3882 -7.6530 36 1 1.6983 -4.5313 1.0284 37 1 2.6591 -3.1645 1.8099 38 1 0.5081 -1.8797 2.2086 39 1 -0.4536 -3.2458 1.4272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849375774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:03 Heat of formation + Delta-G solvation = -82.284000 kcal Electronic energy + Delta-G solvation = -24609.818991 eV Core-core repulsion = 20840.420410 eV Total energy + Delta-G solvation = -3769.398581 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.78286 -38.01079 -36.76907 -36.26313 -35.12690 -34.37322 -33.23115 -32.05913 -30.88794 -28.18755 -27.33249 -25.47083 -23.33772 -21.96531 -21.22471 -20.82548 -19.73832 -18.78027 -18.17262 -17.28467 -16.66447 -16.33695 -16.08892 -15.94653 -15.26287 -15.04547 -14.71736 -14.51891 -14.19810 -13.77386 -13.44286 -13.12607 -13.04626 -12.96383 -12.60029 -11.98233 -11.84870 -11.81021 -11.56704 -11.30446 -11.17282 -11.03317 -10.96202 -10.59124 -10.54480 -10.46356 -10.13911 -10.11068 -9.75317 -9.31961 -8.96776 -8.69591 -8.58872 -8.10916 -6.16019 -4.26276 1.02213 1.49994 2.41705 2.69777 3.27216 3.35164 3.42066 3.42576 4.09716 4.30831 4.35970 4.50466 4.59257 4.77287 4.86877 4.96924 5.03807 5.13173 5.19738 5.43131 5.54720 5.57866 5.65865 5.74991 5.85792 5.93927 6.02307 6.24570 6.27506 6.35681 6.59392 6.71338 6.87357 6.96959 7.18254 7.24048 7.30911 7.37951 7.79009 8.18820 8.79797 9.45008 10.91754 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.004335 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.887798 B = 6457.569281 C = 7418.486375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.081 3.919 3 Si 0.892 3.108 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.069 0.931 9 C 0.042 3.958 10 C -0.554 4.554 11 S 2.607 3.393 12 O -0.971 6.971 13 O -0.950 6.950 14 N -1.129 6.129 15 C 0.087 3.913 16 C 0.191 3.809 17 H 0.135 0.865 18 O -0.548 6.548 19 C -0.048 4.048 20 C -0.194 4.194 21 C -0.214 4.214 22 C -0.036 4.036 23 O -0.172 6.172 24 C -0.208 4.208 25 C -0.141 4.141 26 H 0.262 0.738 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.414 0.586 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.384 0.616 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.204 0.796 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.267 -7.298 -13.028 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.123 4.123 3 Si 0.719 3.281 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.087 0.913 9 C 0.039 3.961 10 C -0.687 4.687 11 S 2.705 3.295 12 O -0.962 6.962 13 O -0.939 6.939 14 N -0.886 5.886 15 C -0.041 4.041 16 C 0.130 3.870 17 H 0.152 0.848 18 O -0.354 6.354 19 C -0.099 4.099 20 C -0.213 4.213 21 C -0.233 4.233 22 C -0.103 4.103 23 O -0.068 6.068 24 C -0.245 4.245 25 C -0.180 4.180 26 H 0.072 0.928 27 H 0.151 0.849 28 H 0.118 0.882 29 H 0.248 0.752 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.232 0.768 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.221 0.779 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.164 -7.236 -12.952 15.710 hybrid contribution -0.904 1.109 -0.021 1.431 sum -6.068 -6.127 -12.973 15.578 Atomic orbital electron populations 1.69986 1.06053 1.27091 1.47940 1.24958 0.94804 0.99252 0.93326 0.86513 0.80782 0.83146 0.77638 1.19186 1.20657 1.20832 1.20574 0.93751 0.88567 1.52297 0.91260 1.18291 0.99059 0.94389 0.84312 1.29975 1.16510 1.08482 1.13731 1.05159 0.76443 0.73702 0.74234 1.93512 1.65405 1.59452 1.77827 1.93535 1.74915 1.50963 1.74532 1.55927 1.61920 1.22811 1.47956 1.21942 0.94519 0.96384 0.91207 1.20683 0.93018 0.82622 0.90638 0.84754 1.86582 1.38098 1.29661 1.81032 1.23171 0.81860 1.04285 1.00590 1.21669 1.00703 1.01885 0.97068 1.21859 0.92348 1.05730 1.03412 1.24096 1.00329 0.96838 0.89075 1.83972 1.22493 1.55537 1.44782 1.23200 0.98668 0.96059 1.06570 1.22554 0.92585 1.01035 1.01864 0.92789 0.84944 0.88171 0.75249 0.88616 0.90918 0.76754 0.83068 0.83271 0.77944 0.90635 0.89499 0.89586 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.86 12.98 55.43 0.72 -23.14 16 2 C 0.08 2.21 5.38 -17.82 -0.10 2.11 16 3 Si 0.89 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.97 8.18 -34.44 -0.28 -14.26 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 C 0.04 1.01 1.32 -155.66 -0.21 0.80 16 10 C -0.55 -11.38 5.93 37.16 0.22 -11.16 16 11 S 2.61 51.45 5.19 -107.50 -0.56 50.89 16 12 O -0.97 -21.07 18.08 -57.54 -1.04 -22.11 16 13 O -0.95 -22.12 17.17 -57.54 -0.99 -23.11 16 14 N -1.13 -16.19 5.85 -10.61 -0.06 -16.25 16 15 C 0.09 1.11 5.75 -4.04 -0.02 1.09 16 16 C 0.19 2.05 3.52 -27.88 -0.10 1.95 16 17 H 0.14 1.30 8.13 -51.93 -0.42 0.87 16 18 O -0.55 -5.70 13.13 -37.36 -0.49 -6.19 16 19 C -0.05 -0.54 6.18 -35.62 -0.22 -0.76 16 20 C -0.19 -2.08 10.80 -39.70 -0.43 -2.51 16 21 C -0.21 -2.06 10.91 -39.70 -0.43 -2.50 16 22 C -0.04 -0.33 12.09 29.42 0.36 0.03 16 23 O -0.17 -1.92 10.58 3.58 0.04 -1.88 16 24 C -0.21 -4.53 9.96 -26.70 -0.27 -4.80 16 25 C -0.14 -3.19 9.49 -26.70 -0.25 -3.45 16 26 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 27 H 0.13 2.81 8.14 -51.92 -0.42 2.39 16 28 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 29 H 0.41 5.15 8.47 -34.47 -0.29 4.86 16 30 H 0.10 1.33 7.69 -51.92 -0.40 0.93 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.38 3.01 8.97 45.56 0.41 3.42 16 33 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 38 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 39 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -34.17 353.90 -8.28 -42.45 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.48 Total: 11.18 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: -1.73 Total: -33.45 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.66 Total: -39.39 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -2.48 Total: -53.28 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 51.45 SS G_CDS: -0.56 Total: 50.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.17 -8.28 -42.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849375774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.838 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds