Wall clock time and date at job start Tue Mar 31 2020 11:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00000 * 2 1 4 4 H 1.48502 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47219 * 299.99790 * 3 2 1 6 6 H 1.48495 * 109.46954 * 60.00131 * 3 2 1 7 7 C 1.37882 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99557 * 172.23308 * 7 2 1 9 9 C 1.50697 * 120.00315 * 352.23472 * 7 2 1 10 10 C 1.52999 * 115.55436 * 84.78292 * 9 7 2 11 11 S 1.81408 * 109.46898 * 65.19148 * 10 9 7 12 12 O 1.42099 * 110.53974 * 62.19117 * 11 10 9 13 13 O 1.42100 * 110.54269 * 285.44081 * 11 10 9 14 14 N 1.65601 * 104.44556 * 173.81256 * 11 10 9 15 15 C 1.46498 * 119.99879 * 65.00402 * 14 11 10 16 16 C 1.53000 * 109.47302 * 164.99397 * 15 14 11 17 17 H 1.09002 * 109.47586 * 305.00511 * 16 15 14 18 18 O 1.42906 * 109.46844 * 64.99967 * 16 15 14 19 19 C 1.50696 * 109.47373 * 184.99874 * 16 15 14 20 20 C 1.34518 * 125.78897 * 100.00319 * 19 16 15 21 21 C 1.41376 * 106.84309 * 180.02562 * 20 19 16 22 22 C 1.34518 * 106.84211 * 0.02562 * 21 20 19 23 23 O 1.34297 * 125.79221 * 280.02325 * 19 16 15 24 24 C 1.52998 * 117.49559 * 230.45560 * 9 7 2 25 25 C 1.52998 * 117.49646 * 299.11174 * 9 7 2 26 26 H 0.96997 * 120.00201 * 5.02432 * 1 2 3 27 27 H 1.09005 * 109.46625 * 305.20095 * 10 9 7 28 28 H 1.08995 * 109.47424 * 185.19307 * 10 9 7 29 29 H 0.96996 * 120.00244 * 244.99689 * 14 11 10 30 30 H 1.09010 * 109.47164 * 44.99846 * 15 14 11 31 31 H 1.09002 * 109.47225 * 284.99621 * 15 14 11 32 32 H 0.96698 * 113.99921 * 60.00280 * 18 16 15 33 33 H 1.08003 * 126.57523 * 359.97438 * 20 19 16 34 34 H 1.07994 * 126.58069 * 180.02562 * 21 20 19 35 35 H 1.07993 * 125.79576 * 179.97438 * 22 21 20 36 36 H 1.09006 * 117.49426 * 214.99924 * 24 9 7 37 37 H 1.09000 * 117.50348 * 0.02562 * 24 9 7 38 38 H 1.09002 * 117.50116 * 359.97438 * 25 9 7 39 39 H 1.09009 * 117.49951 * 144.97693 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0771 -1.1985 -0.1259 9 6 1.2614 -2.4931 0.1774 10 6 0.6669 -3.0925 -1.0986 11 16 2.0071 -3.5643 -2.2264 12 8 2.8267 -4.5639 -1.6362 13 8 2.5779 -2.4125 -2.8321 14 7 1.2438 -4.3448 -3.4716 15 6 0.3177 -3.6112 -4.3378 16 6 0.0447 -4.4294 -5.6015 17 1 0.9895 -4.6764 -6.0857 18 8 -0.6397 -5.6338 -5.2505 19 6 -0.8088 -3.6239 -6.5469 20 6 -0.3666 -2.9413 -7.6183 21 6 -1.4973 -2.3364 -8.2138 22 6 -2.5627 -2.6851 -7.4703 23 8 -2.1397 -3.4656 -6.4625 24 6 1.7804 -3.4649 1.2391 25 6 0.4826 -2.6897 1.4796 26 1 -0.4850 0.8368 -0.0736 27 1 0.0275 -2.3544 -1.5829 28 1 0.0776 -3.9738 -0.8458 29 1 1.4098 -5.2876 -3.6274 30 1 0.7594 -2.6535 -4.6135 31 1 -0.6185 -3.4400 -3.8065 32 1 -1.4907 -5.4898 -4.8144 33 1 0.6560 -2.8685 -7.9580 34 1 -1.5043 -1.7138 -9.0962 35 1 -3.5848 -2.3882 -7.6530 36 1 1.6983 -4.5313 1.0284 37 1 2.6591 -3.1645 1.8099 38 1 0.5081 -1.8797 2.2086 39 1 -0.4536 -3.2458 1.4272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849375774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:02 Heat of formation + Delta-G solvation = -109.199467 kcal Electronic energy + Delta-G solvation = -24610.986134 eV Core-core repulsion = 20840.420410 eV Total energy + Delta-G solvation = -3770.565724 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.53639 -38.90488 -38.56215 -37.93297 -36.80389 -35.47161 -34.08717 -34.00057 -31.71653 -29.85511 -28.25853 -27.48591 -24.27034 -22.98743 -22.72268 -21.71776 -21.39611 -20.26638 -19.06052 -18.61964 -18.33096 -17.65243 -17.01522 -16.85249 -16.76160 -16.63531 -16.31276 -15.79488 -15.44291 -15.32460 -14.90059 -14.31857 -13.86982 -13.76894 -13.75132 -13.63516 -13.35953 -13.12384 -13.05274 -12.91284 -12.86638 -12.85944 -12.64553 -12.44284 -12.21677 -11.91734 -11.56353 -11.41721 -10.88407 -10.87277 -10.60936 -10.54031 -9.88392 -9.45488 -8.20086 -6.34235 -0.53494 0.72327 1.36478 1.40077 1.51111 1.66728 1.87993 2.13591 2.39334 2.92895 3.07289 3.28246 3.38666 3.43657 3.59442 3.66295 3.98216 4.01409 4.13715 4.26639 4.29934 4.43773 4.52426 4.59880 4.66852 4.78477 4.85166 4.90833 4.98706 5.00857 5.15114 5.21719 5.46914 5.56913 5.59360 5.71819 6.11718 6.13733 6.22700 6.60011 6.72271 7.38113 8.87156 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.004335 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.887798 B = 6457.569281 C = 7418.486375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.043 3.957 3 Si 0.935 3.065 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.552 4.552 11 S 2.626 3.374 12 O -0.993 6.993 13 O -0.991 6.991 14 N -1.109 6.109 15 C 0.080 3.920 16 C 0.203 3.797 17 H 0.144 0.856 18 O -0.553 6.553 19 C -0.068 4.068 20 C -0.206 4.206 21 C -0.231 4.231 22 C -0.035 4.035 23 O -0.184 6.184 24 C -0.196 4.196 25 C -0.138 4.138 26 H 0.265 0.735 27 H 0.123 0.877 28 H 0.135 0.865 29 H 0.426 0.574 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.395 0.605 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.238 0.762 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 -8.035 -13.868 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.160 4.160 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.067 0.933 9 C 0.007 3.993 10 C -0.685 4.685 11 S 2.723 3.277 12 O -0.983 6.983 13 O -0.981 6.981 14 N -0.870 5.870 15 C -0.046 4.046 16 C 0.142 3.858 17 H 0.161 0.839 18 O -0.360 6.360 19 C -0.118 4.118 20 C -0.226 4.226 21 C -0.249 4.249 22 C -0.102 4.102 23 O -0.081 6.081 24 C -0.234 4.234 25 C -0.178 4.178 26 H 0.074 0.926 27 H 0.141 0.859 28 H 0.153 0.847 29 H 0.263 0.737 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.245 0.755 33 H 0.179 0.821 34 H 0.186 0.814 35 H 0.254 0.746 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.336 -7.984 -13.779 17.139 hybrid contribution -0.582 1.317 0.191 1.452 sum -6.919 -6.667 -13.588 16.642 Atomic orbital electron populations 1.70023 1.06594 1.27718 1.48515 1.25506 0.95603 1.01510 0.93357 0.85853 0.79494 0.80533 0.78073 1.19741 1.20193 1.19731 1.20736 0.93157 0.90623 1.52499 0.93316 1.18431 1.00360 0.94342 0.86210 1.29869 1.16781 1.09507 1.12331 1.04298 0.76154 0.72837 0.74384 1.93473 1.66470 1.59665 1.78705 1.93483 1.76154 1.53034 1.75444 1.55342 1.61832 1.23260 1.46605 1.22133 0.94267 0.96087 0.92160 1.20521 0.93531 0.82281 0.89454 0.83881 1.86565 1.38860 1.29394 1.81181 1.23223 0.82170 1.05272 1.01181 1.22014 1.01711 1.01690 0.97162 1.22208 0.92129 1.06252 1.04347 1.24869 1.01840 0.95505 0.88022 1.83962 1.22442 1.56073 1.45575 1.23250 0.98119 0.96981 1.05008 1.22513 0.93884 1.00829 1.00529 0.92553 0.85860 0.84663 0.73723 0.90001 0.89722 0.75496 0.82132 0.81369 0.74556 0.88213 0.89962 0.91609 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.60 12.98 21.45 0.28 -48.32 16 2 C 0.04 2.34 5.38 84.66 0.46 2.80 16 3 Si 0.93 43.79 29.55 68.60 2.03 45.81 16 4 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.53 -29.28 8.18 25.60 0.21 -29.07 16 8 H 0.05 2.79 7.83 -2.91 -0.02 2.77 16 9 C 0.01 0.42 1.32 -52.93 -0.07 0.35 16 10 C -0.55 -22.02 5.93 71.98 0.43 -21.60 16 11 S 2.63 102.02 5.19 -56.49 -0.29 101.73 16 12 O -0.99 -42.13 18.08 -127.65 -2.31 -44.44 16 13 O -0.99 -46.75 17.17 -127.65 -2.19 -48.94 16 14 N -1.11 -30.24 5.85 -187.48 -1.10 -31.33 16 15 C 0.08 1.96 5.75 86.38 0.50 2.46 16 16 C 0.20 4.06 3.52 29.85 0.11 4.16 16 17 H 0.14 2.55 8.13 -2.39 -0.02 2.53 16 18 O -0.55 -10.38 13.13 -146.95 -1.93 -12.31 16 19 C -0.07 -1.44 6.18 24.83 0.15 -1.28 16 20 C -0.21 -4.20 10.80 22.19 0.24 -3.96 16 21 C -0.23 -4.05 10.91 22.19 0.24 -3.80 16 22 C -0.04 -0.58 12.09 66.97 0.81 0.23 16 23 O -0.18 -3.82 10.58 -0.46 0.00 -3.82 16 24 C -0.20 -8.34 9.96 30.62 0.30 -8.03 16 25 C -0.14 -6.12 9.49 30.62 0.29 -5.83 16 26 H 0.27 13.70 8.32 -92.71 -0.77 12.93 16 27 H 0.12 5.16 8.14 -2.39 -0.02 5.14 16 28 H 0.14 4.31 8.09 -2.39 -0.02 4.29 16 29 H 0.43 9.77 8.47 -96.75 -0.82 8.95 16 30 H 0.08 2.26 7.69 -2.38 -0.02 2.24 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.39 5.38 8.97 -74.06 -0.66 4.72 16 33 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.24 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.10 3.72 8.14 -2.38 -0.02 3.70 16 37 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 38 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 Total: -1.00 -72.69 353.90 -2.26 -74.94 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.40 Total: 30.26 kcal Atomic # 6 Polarization: -67.24 SS G_CDS: 3.66 Total: -63.57 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -0.82 Total: -79.66 kcal Atomic # 8 Polarization: -103.08 SS G_CDS: -6.43 Total: -109.51 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 102.02 SS G_CDS: -0.29 Total: 101.73 kcal Total: -72.69 -2.26 -74.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849375774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.255 kcal (2) G-P(sol) polarization free energy of solvation -72.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds