Wall clock time and date at job start Tue Mar 31 2020 11:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48500 * 109.47043 * 239.99985 * 3 2 1 5 5 H 1.48504 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47144 * 119.99683 * 3 2 1 7 7 C 1.37877 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99831 * 183.13112 * 7 2 1 9 9 C 1.50698 * 120.00536 * 3.13126 * 7 2 1 10 10 C 1.53006 * 115.54647 * 324.97463 * 9 7 2 11 11 O 1.45203 * 109.47119 * 305.28490 * 10 9 7 12 12 C 1.34665 * 117.00092 * 184.86944 * 11 10 9 13 13 O 1.21438 * 119.99681 * 5.10475 * 12 11 10 14 14 C 1.48049 * 120.00244 * 185.10184 * 12 11 10 15 15 C 1.39872 * 120.92487 * 354.75937 * 14 12 11 16 16 C 1.38127 * 118.99618 * 179.97438 * 15 14 12 17 17 N 1.31818 * 120.90251 * 0.02562 * 16 15 14 18 18 C 1.31800 * 122.06204 * 359.97438 * 17 16 15 19 19 C 1.38167 * 120.89851 * 0.02562 * 18 17 16 20 20 C 1.50701 * 120.50449 * 179.97438 * 19 18 17 21 21 F 1.39898 * 109.46796 * 0.02562 * 20 19 18 22 22 F 1.39893 * 109.47200 * 120.02077 * 20 19 18 23 23 F 1.39892 * 109.47208 * 240.02539 * 20 19 18 24 24 C 1.52996 * 117.49899 * 110.63934 * 9 7 2 25 25 C 1.52997 * 117.50206 * 179.30225 * 9 7 2 26 26 H 0.96994 * 119.99495 * 5.00464 * 1 2 3 27 27 H 1.08999 * 109.46953 * 185.28378 * 10 9 7 28 28 H 1.08998 * 109.47126 * 65.28720 * 10 9 7 29 29 H 1.08003 * 120.50615 * 359.97438 * 15 14 12 30 30 H 1.08005 * 119.54711 * 180.02562 * 16 15 14 31 31 H 1.08003 * 119.54787 * 179.97438 * 18 17 16 32 32 H 1.08999 * 117.49925 * 215.00705 * 24 9 7 33 33 H 1.09001 * 117.50088 * 0.02562 * 24 9 7 34 34 H 1.08996 * 117.49873 * 359.97247 * 25 9 7 35 35 H 1.08999 * 117.50065 * 144.97769 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0833 -1.1948 0.0516 9 6 1.2528 -2.4983 -0.0702 10 6 -0.0922 -2.5250 0.6589 11 8 0.0991 -2.1270 2.0421 12 6 -0.9747 -2.1946 2.8519 13 8 -2.0171 -2.6623 2.4402 14 6 -0.8846 -1.6989 4.2440 15 6 0.3329 -1.2575 4.7724 16 6 0.3714 -0.8025 6.0761 17 7 -0.7178 -0.7817 6.8182 18 6 -1.8847 -1.1884 6.3598 19 6 -2.0143 -1.6590 5.0673 20 6 -3.3527 -2.1223 4.5525 21 9 -4.3135 -1.9826 5.5597 22 9 -3.7204 -1.3483 3.4467 23 9 -3.2667 -3.4661 4.1732 24 6 1.3744 -3.3148 -1.3583 25 6 2.0754 -3.7882 -0.0824 26 1 -0.4849 0.8368 -0.0733 27 1 -0.5040 -3.5336 0.6246 28 1 -0.7820 -1.8342 0.1741 29 1 1.2294 -1.2721 4.1703 30 1 1.3067 -0.4592 6.4930 31 1 -2.7512 -1.1540 7.0036 32 1 0.4964 -3.8711 -1.6863 33 1 1.9986 -2.9090 -2.1544 34 1 3.1605 -3.6935 -0.0398 35 1 1.6588 -4.6558 0.4291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849771585.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:10 Heat of formation + Delta-G solvation = -160.336816 kcal Electronic energy + Delta-G solvation = -27068.452808 eV Core-core repulsion = 22618.368911 eV Total energy + Delta-G solvation = -4450.083897 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.90825 -47.49125 -47.23012 -40.71101 -39.26078 -36.87400 -35.23240 -33.24519 -32.27915 -32.11965 -27.26393 -26.22227 -25.53105 -24.66123 -22.69100 -21.39075 -20.94155 -19.28421 -18.66107 -18.19039 -18.09871 -17.45866 -17.00604 -16.34988 -15.73962 -15.58983 -14.90383 -14.74914 -14.72877 -14.27113 -14.10448 -14.00834 -13.83299 -13.69945 -13.43152 -13.39964 -13.13197 -12.97167 -12.20783 -12.14365 -11.81022 -11.52715 -11.11465 -10.93280 -10.59387 -10.44832 -10.38647 -10.22115 -9.92250 -9.62549 -9.60090 -9.54163 -9.07439 -8.86492 -8.34045 -6.09199 -4.22088 0.27358 0.68556 2.68338 2.81464 3.10176 3.21067 3.27947 3.29027 3.55150 3.76581 4.09785 4.15837 4.27143 4.44407 4.60747 4.71375 4.90068 4.96432 5.09137 5.39475 5.45167 5.60060 5.75887 5.95384 6.11605 6.21166 6.36330 6.51368 6.55555 6.68672 6.86515 7.14990 7.30802 7.35934 7.49355 7.80953 8.20574 8.35235 8.75817 9.40531 10.86661 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.005136 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.042991 B = 5450.854794 C = 6131.362673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.480 4.480 8 H 0.062 0.938 9 C 0.043 3.957 10 C 0.120 3.880 11 O -0.305 6.305 12 C 0.489 3.511 13 O -0.497 6.497 14 C -0.012 4.012 15 C -0.115 4.115 16 C 0.121 3.879 17 N -0.468 5.468 18 C 0.139 3.861 19 C -0.194 4.194 20 C 0.522 3.478 21 F -0.184 7.184 22 F -0.161 7.161 23 F -0.161 7.161 24 C -0.193 4.193 25 C -0.209 4.209 26 H 0.264 0.736 27 H 0.026 0.974 28 H 0.122 0.878 29 H 0.169 0.831 30 H 0.175 0.825 31 H 0.176 0.824 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 -2.263 11.262 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.129 4.129 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.517 4.517 8 H 0.081 0.919 9 C 0.043 3.957 10 C 0.048 3.952 11 O -0.218 6.218 12 C 0.332 3.668 13 O -0.387 6.387 14 C -0.021 4.021 15 C -0.135 4.135 16 C -0.035 4.035 17 N -0.177 5.177 18 C -0.018 4.018 19 C -0.198 4.198 20 C 0.466 3.534 21 F -0.166 7.166 22 F -0.142 7.142 23 F -0.142 7.142 24 C -0.231 4.231 25 C -0.246 4.246 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.139 0.861 29 H 0.186 0.814 30 H 0.192 0.808 31 H 0.193 0.807 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.982 -1.986 11.974 12.499 hybrid contribution 0.138 0.400 -1.212 1.284 sum -2.844 -1.586 10.762 11.244 Atomic orbital electron populations 1.69744 1.05947 1.27033 1.49503 1.24955 0.94851 0.99220 0.93908 0.86563 0.79519 0.82606 0.78794 1.20160 1.21190 1.20016 1.20429 0.92548 0.88365 1.50388 0.91949 1.18941 0.92254 0.90622 0.93922 1.23069 0.99730 0.97153 0.75252 1.86487 1.34656 1.76654 1.23997 1.20713 0.83306 0.76928 0.85881 1.90857 1.30108 1.41718 1.75996 1.19577 0.93525 0.96732 0.92285 1.22757 0.98634 0.95282 0.96823 1.23145 0.97250 0.92932 0.90209 1.67734 0.98738 1.13871 1.37319 1.22671 0.96565 0.91490 0.91029 1.21249 0.93536 1.07228 0.97795 1.17709 0.83752 0.76398 0.75499 1.93140 1.66725 1.95717 1.60971 1.93269 1.92337 1.74717 1.53895 1.93248 1.96208 1.33439 1.91319 1.22995 1.01682 1.05970 0.92474 1.22970 0.98689 1.00050 1.02935 0.92573 0.95537 0.86063 0.81352 0.80822 0.80748 0.91328 0.89682 0.90231 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.41 10.19 55.43 0.56 -22.85 16 2 C 0.07 1.87 5.35 -17.82 -0.10 1.78 16 3 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.48 -12.27 8.80 -34.44 -0.30 -12.58 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.04 1.02 2.20 -155.66 -0.34 0.68 16 10 C 0.12 2.86 4.45 37.16 0.17 3.02 16 11 O -0.30 -6.88 9.16 -40.40 -0.37 -7.25 16 12 C 0.49 10.13 7.73 34.75 0.27 10.40 16 13 O -0.50 -11.07 11.33 -19.22 -0.22 -11.28 16 14 C -0.01 -0.20 5.88 -104.66 -0.62 -0.82 16 15 C -0.12 -1.60 9.71 -39.01 -0.38 -1.98 16 16 C 0.12 1.38 11.17 -17.60 -0.20 1.19 16 17 N -0.47 -5.81 10.33 -13.31 -0.14 -5.95 16 18 C 0.14 1.73 10.59 -17.59 -0.19 1.55 16 19 C -0.19 -2.94 5.41 -104.05 -0.56 -3.50 16 20 C 0.52 8.39 2.78 36.01 0.10 8.49 16 21 F -0.18 -2.48 16.01 2.25 0.04 -2.45 16 22 F -0.16 -3.00 15.31 2.25 0.03 -2.96 16 23 F -0.16 -2.84 14.96 2.25 0.03 -2.80 16 24 C -0.19 -4.11 9.96 -26.69 -0.27 -4.38 16 25 C -0.21 -4.32 9.93 -26.69 -0.26 -4.59 16 26 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 27 H 0.03 0.60 7.92 -51.93 -0.41 0.19 16 28 H 0.12 3.19 5.89 -51.93 -0.31 2.89 16 29 H 0.17 2.29 7.72 -52.48 -0.41 1.88 16 30 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.18 1.68 7.17 -52.48 -0.38 1.30 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -28.52 317.58 -6.13 -34.65 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -3.16 Total: 1.88 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.68 Total: -0.73 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: 0.43 Total: -28.80 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.59 Total: -18.53 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 0.10 Total: -8.21 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.52 -6.13 -34.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849771585.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.686 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds