Wall clock time and date at job start Tue Mar 31 2020 11:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48500 * 109.47043 * 239.99985 * 3 2 1 5 5 H 1.48504 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47144 * 119.99683 * 3 2 1 7 7 C 1.37877 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99831 * 183.13112 * 7 2 1 9 9 C 1.50698 * 120.00536 * 3.13126 * 7 2 1 10 10 C 1.53006 * 115.54647 * 324.97463 * 9 7 2 11 11 O 1.45203 * 109.47119 * 305.28490 * 10 9 7 12 12 C 1.34665 * 117.00092 * 184.86944 * 11 10 9 13 13 O 1.21438 * 119.99681 * 5.10475 * 12 11 10 14 14 C 1.48049 * 120.00244 * 185.10184 * 12 11 10 15 15 C 1.39872 * 120.92487 * 354.75937 * 14 12 11 16 16 C 1.38127 * 118.99618 * 179.97438 * 15 14 12 17 17 N 1.31818 * 120.90251 * 0.02562 * 16 15 14 18 18 C 1.31800 * 122.06204 * 359.97438 * 17 16 15 19 19 C 1.38167 * 120.89851 * 0.02562 * 18 17 16 20 20 C 1.50701 * 120.50449 * 179.97438 * 19 18 17 21 21 F 1.39898 * 109.46796 * 0.02562 * 20 19 18 22 22 F 1.39893 * 109.47200 * 120.02077 * 20 19 18 23 23 F 1.39892 * 109.47208 * 240.02539 * 20 19 18 24 24 C 1.52996 * 117.49899 * 110.63934 * 9 7 2 25 25 C 1.52997 * 117.50206 * 179.30225 * 9 7 2 26 26 H 0.96994 * 119.99495 * 5.00464 * 1 2 3 27 27 H 1.08999 * 109.46953 * 185.28378 * 10 9 7 28 28 H 1.08998 * 109.47126 * 65.28720 * 10 9 7 29 29 H 1.08003 * 120.50615 * 359.97438 * 15 14 12 30 30 H 1.08005 * 119.54711 * 180.02562 * 16 15 14 31 31 H 1.08003 * 119.54787 * 179.97438 * 18 17 16 32 32 H 1.08999 * 117.49925 * 215.00705 * 24 9 7 33 33 H 1.09001 * 117.50088 * 0.02562 * 24 9 7 34 34 H 1.08996 * 117.49873 * 359.97247 * 25 9 7 35 35 H 1.08999 * 117.50065 * 144.97769 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0833 -1.1948 0.0516 9 6 1.2528 -2.4983 -0.0702 10 6 -0.0922 -2.5250 0.6589 11 8 0.0991 -2.1270 2.0421 12 6 -0.9747 -2.1946 2.8519 13 8 -2.0171 -2.6623 2.4402 14 6 -0.8846 -1.6989 4.2440 15 6 0.3329 -1.2575 4.7724 16 6 0.3714 -0.8025 6.0761 17 7 -0.7178 -0.7817 6.8182 18 6 -1.8847 -1.1884 6.3598 19 6 -2.0143 -1.6590 5.0673 20 6 -3.3527 -2.1223 4.5525 21 9 -4.3135 -1.9826 5.5597 22 9 -3.7204 -1.3483 3.4467 23 9 -3.2667 -3.4661 4.1732 24 6 1.3744 -3.3148 -1.3583 25 6 2.0754 -3.7882 -0.0824 26 1 -0.4849 0.8368 -0.0733 27 1 -0.5040 -3.5336 0.6246 28 1 -0.7820 -1.8342 0.1741 29 1 1.2294 -1.2721 4.1703 30 1 1.3067 -0.4592 6.4930 31 1 -2.7512 -1.1540 7.0036 32 1 0.4964 -3.8711 -1.6863 33 1 1.9986 -2.9090 -2.1544 34 1 3.1605 -3.6935 -0.0398 35 1 1.6588 -4.6558 0.4291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849771585.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:09 Heat of formation + Delta-G solvation = -174.822745 kcal Electronic energy + Delta-G solvation = -27069.080965 eV Core-core repulsion = 22618.368911 eV Total energy + Delta-G solvation = -4450.712054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.18185 -48.72788 -48.59046 -41.95338 -40.73536 -38.60465 -36.93307 -34.41285 -34.19439 -33.20659 -28.83608 -27.69033 -27.29674 -25.95738 -23.86748 -23.04505 -22.36858 -21.11939 -19.92188 -19.49647 -19.36381 -18.82625 -18.64990 -17.85369 -17.35011 -16.98524 -16.55778 -16.21437 -15.81539 -15.64055 -15.43813 -15.35130 -15.13538 -15.03095 -14.89140 -14.77239 -14.67157 -14.03662 -13.93875 -13.82046 -13.39459 -12.95085 -12.90377 -12.73904 -12.33473 -12.15018 -11.97647 -11.51620 -11.43435 -11.34418 -10.94078 -10.89464 -10.69606 -10.62326 -10.18423 -8.00788 -6.19851 -0.91971 -0.35978 1.33162 1.45095 1.46358 1.47354 1.54022 1.68206 2.39170 2.43049 2.56374 2.89885 3.01299 3.20879 3.32176 3.35130 3.45655 3.64825 3.77802 3.98674 4.19403 4.30689 4.41725 4.49376 4.57769 4.70339 4.77514 4.90285 4.95163 5.17181 5.23201 5.41334 5.50520 5.62066 5.83607 6.31513 6.48637 6.65603 6.82919 7.44593 8.92345 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.005136 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.042991 B = 5450.854794 C = 6131.362673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.031 3.969 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.492 4.492 8 H 0.060 0.940 9 C 0.005 3.995 10 C 0.131 3.869 11 O -0.315 6.315 12 C 0.483 3.517 13 O -0.522 6.522 14 C -0.039 4.039 15 C -0.115 4.115 16 C 0.144 3.856 17 N -0.467 5.467 18 C 0.154 3.846 19 C -0.205 4.205 20 C 0.519 3.481 21 F -0.167 7.167 22 F -0.181 7.181 23 F -0.174 7.174 24 C -0.187 4.187 25 C -0.187 4.187 26 H 0.258 0.742 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.169 0.831 30 H 0.219 0.781 31 H 0.205 0.795 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 -1.789 13.245 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.168 4.168 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.529 4.529 8 H 0.078 0.922 9 C 0.005 3.995 10 C 0.058 3.942 11 O -0.228 6.228 12 C 0.327 3.673 13 O -0.413 6.413 14 C -0.048 4.048 15 C -0.135 4.135 16 C -0.013 4.013 17 N -0.175 5.175 18 C -0.002 4.002 19 C -0.209 4.209 20 C 0.464 3.536 21 F -0.149 7.149 22 F -0.163 7.163 23 F -0.155 7.155 24 C -0.225 4.225 25 C -0.224 4.224 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.108 0.892 29 H 0.186 0.814 30 H 0.236 0.764 31 H 0.222 0.778 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.630 -1.524 13.969 14.146 hybrid contribution -0.284 0.220 -1.768 1.805 sum -1.914 -1.304 12.201 12.419 Atomic orbital electron populations 1.69935 1.07073 1.27069 1.50546 1.25611 0.95450 1.01967 0.93817 0.85686 0.78335 0.78979 0.79128 1.19883 1.21697 1.18851 1.20659 0.92554 0.89463 1.50269 0.92170 1.19084 0.92919 0.91487 0.96022 1.22745 0.99308 0.96182 0.75997 1.86476 1.35699 1.77076 1.23592 1.21440 0.82471 0.76181 0.87184 1.90827 1.30732 1.42893 1.76879 1.19488 0.95640 0.99209 0.90448 1.22881 0.97448 0.95175 0.98010 1.23798 0.98498 0.90363 0.88669 1.67905 0.98880 1.13620 1.37103 1.23122 0.97644 0.89532 0.89898 1.21245 0.92258 1.08623 0.98739 1.17871 0.84779 0.75641 0.75277 1.93162 1.66217 1.95572 1.59912 1.93223 1.92614 1.75181 1.55247 1.93213 1.96342 1.34441 1.91545 1.23011 1.02193 1.05151 0.92172 1.22981 0.98905 0.98668 1.01832 0.93235 0.95421 0.89179 0.81352 0.76436 0.77831 0.90214 0.89579 0.89313 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.26 10.19 21.45 0.22 -49.05 16 2 C 0.03 1.61 5.35 84.65 0.45 2.06 16 3 Si 0.95 40.83 29.54 68.60 2.03 42.86 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.49 -25.18 8.80 25.60 0.23 -24.95 16 8 H 0.06 3.02 7.82 -2.91 -0.02 3.00 16 9 C 0.01 0.25 2.20 -52.93 -0.12 0.13 16 10 C 0.13 6.38 4.45 71.98 0.32 6.70 16 11 O -0.31 -14.57 9.16 -55.74 -0.51 -15.08 16 12 C 0.48 20.60 7.73 70.43 0.54 21.15 16 13 O -0.52 -24.25 11.33 20.04 0.23 -24.02 16 14 C -0.04 -1.30 5.88 -19.89 -0.12 -1.41 16 15 C -0.12 -3.01 9.71 22.64 0.22 -2.79 16 16 C 0.14 2.76 11.17 84.67 0.95 3.70 16 17 N -0.47 -9.90 10.33 -196.01 -2.03 -11.92 16 18 C 0.15 3.42 10.59 84.68 0.90 4.32 16 19 C -0.20 -6.02 5.41 -19.49 -0.11 -6.12 16 20 C 0.52 16.74 2.78 71.24 0.20 16.94 16 21 F -0.17 -4.33 16.01 44.97 0.72 -3.61 16 22 F -0.18 -6.95 15.31 44.97 0.69 -6.27 16 23 F -0.17 -6.27 14.96 44.97 0.67 -5.60 16 24 C -0.19 -7.85 9.96 30.62 0.30 -7.54 16 25 C -0.19 -7.47 9.93 30.62 0.30 -7.17 16 26 H 0.26 13.73 8.32 -92.71 -0.77 12.96 16 27 H 0.03 1.30 7.92 -2.39 -0.02 1.28 16 28 H 0.09 4.97 5.89 -2.39 -0.01 4.96 16 29 H 0.17 4.38 7.72 -2.91 -0.02 4.36 16 30 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.21 3.21 7.17 -2.91 -0.02 3.19 16 32 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 34 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -62.66 317.58 7.24 -55.42 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.15 Total: 12.26 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 4.07 Total: 5.01 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -1.81 Total: -60.97 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.28 Total: -39.11 kcal Atomic # 9 Polarization: -17.55 SS G_CDS: 2.08 Total: -15.47 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -62.66 7.24 -55.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849771585.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.405 kcal (2) G-P(sol) polarization free energy of solvation -62.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds