Wall clock time and date at job start Tue Mar 31 2020 11:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48499 * 109.46800 * 269.99420 * 3 2 1 5 5 H 1.48496 * 109.47130 * 29.99604 * 3 2 1 6 6 H 1.48497 * 109.47161 * 149.99840 * 3 2 1 7 7 C 1.37883 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00057 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99995 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47159 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47139 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47107 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99973 * 179.97438 * 12 11 10 14 14 O 1.21585 * 119.99786 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99930 * 179.97438 * 13 12 11 16 16 N 1.40107 * 119.99799 * 0.02562 * 15 13 12 17 17 C 1.39670 * 119.99334 * 180.02562 * 16 15 13 18 18 C 1.38905 * 120.04797 * 180.02562 * 17 16 15 19 19 C 1.38310 * 119.92108 * 179.97438 * 18 17 16 20 20 F 1.35103 * 119.97976 * 179.97438 * 19 18 17 21 21 C 1.38515 * 120.04186 * 359.97438 * 19 18 17 22 22 C 1.38347 * 120.10643 * 359.97438 * 21 19 18 23 23 Cl 1.73606 * 119.95964 * 180.02562 * 22 21 19 24 24 C 1.38247 * 120.07479 * 0.02562 * 22 21 19 25 25 H 0.97000 * 120.00118 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47205 * 59.99760 * 9 7 2 27 27 H 1.08997 * 109.47104 * 300.00199 * 9 7 2 28 28 H 1.08997 * 109.47290 * 60.00079 * 10 9 7 29 29 H 1.09005 * 109.46915 * 299.99681 * 10 9 7 30 30 H 1.08997 * 109.47111 * 59.99791 * 11 10 9 31 31 H 1.09005 * 109.46811 * 299.99566 * 11 10 9 32 32 H 0.97002 * 119.99898 * 359.97438 * 12 11 10 33 33 H 0.96995 * 119.99801 * 180.02562 * 15 13 12 34 34 H 0.96995 * 120.00400 * 359.97438 * 16 15 13 35 35 H 1.07998 * 120.03744 * 359.69610 * 18 17 16 36 36 H 1.08003 * 119.94650 * 180.02562 * 21 19 18 37 37 H 1.08005 * 120.01681 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 7 6.0399 -4.0178 0.0015 13 6 7.3649 -4.2641 0.0018 14 8 8.1550 -3.3399 0.0023 15 7 7.8142 -5.5347 0.0017 16 7 6.9037 -6.5996 0.0006 17 6 7.3693 -7.9164 0.0010 18 6 6.4676 -8.9730 -0.0006 19 6 6.9317 -10.2760 -0.0008 20 9 6.0557 -11.3045 -0.0018 21 6 8.2939 -10.5270 0.0001 22 6 9.1932 -9.4757 0.0007 23 17 10.8997 -9.7946 0.0011 24 6 8.7345 -8.1715 0.0008 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6805 -0.8888 28 1 3.6585 -3.1502 -0.8892 29 1 3.6578 -3.1506 0.8908 30 1 5.9141 -2.1231 0.8927 31 1 5.9155 -2.1225 -0.8874 32 1 5.4095 -4.7551 0.0008 33 1 8.7678 -5.7120 0.0023 34 1 5.9500 -6.4224 0.0004 35 1 5.4055 -8.7773 0.0028 36 1 8.6545 -11.5450 -0.0004 37 1 9.4374 -7.3515 0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853677369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:03 Heat of formation + Delta-G solvation = -21.465609 kcal Electronic energy + Delta-G solvation = -22251.204970 eV Core-core repulsion = 18391.232411 eV Total energy + Delta-G solvation = -3859.972558 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.39950 -40.67201 -39.60275 -37.29730 -36.33193 -35.75648 -33.41110 -32.44994 -31.41543 -30.84992 -28.72152 -27.23732 -23.86777 -23.07906 -22.92594 -21.12048 -20.58312 -19.23958 -19.02917 -17.28398 -16.92350 -16.75989 -16.62262 -16.16620 -15.93225 -15.58396 -15.33300 -14.93088 -14.62096 -14.46956 -14.00409 -13.97237 -13.80995 -12.98759 -12.76851 -12.59180 -12.18174 -12.14268 -12.00969 -11.55752 -11.41472 -11.19083 -10.96373 -10.70671 -10.13814 -9.94737 -9.84450 -9.77565 -9.29788 -9.29672 -9.11850 -8.60821 -7.88815 -6.11482 -4.10771 0.47287 0.69982 1.35259 1.58993 2.84238 2.84433 3.01277 3.27469 3.35480 3.38902 3.72453 4.20240 4.37935 4.39629 4.44208 4.58717 4.72044 5.13566 5.22478 5.33174 5.41540 5.52077 5.54160 5.57924 5.80173 5.89559 6.13915 6.16665 6.33317 6.47408 6.66790 6.75012 6.92007 7.14450 7.28028 7.69386 7.81077 8.25567 8.44055 8.91719 9.50447 11.01611 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.002142 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.654648 B =13070.684272 C =14289.590546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.129 3.871 12 N -0.736 5.736 13 C 0.711 3.289 14 O -0.572 6.572 15 N -0.538 5.538 16 N -0.536 5.536 17 C 0.264 3.736 18 C -0.224 4.224 19 C 0.170 3.830 20 F -0.128 7.128 21 C -0.206 4.206 22 C 0.046 3.954 23 Cl -0.053 7.053 24 C -0.202 4.202 25 H 0.264 0.736 26 H 0.020 0.980 27 H 0.015 0.985 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.391 0.609 33 H 0.432 0.568 34 H 0.429 0.571 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.665 -22.680 0.028 29.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C 0.006 3.994 12 N -0.392 5.392 13 C 0.410 3.590 14 O -0.445 6.445 15 N -0.295 5.295 16 N -0.264 5.264 17 C 0.157 3.843 18 C -0.249 4.249 19 C 0.149 3.851 20 F -0.106 7.106 21 C -0.228 4.228 22 C 0.019 3.981 23 Cl -0.024 7.024 24 C -0.226 4.226 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.225 0.775 33 H 0.277 0.723 34 H 0.273 0.727 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 19.163 -21.596 0.032 28.872 hybrid contribution -0.037 0.278 -0.021 0.282 sum 19.126 -21.318 0.011 28.640 Atomic orbital electron populations 1.69903 1.06328 1.27032 1.50778 1.25031 0.94760 0.99275 0.94410 0.86773 0.80395 0.83502 0.78616 1.20221 1.21339 1.18880 1.21068 0.89226 0.94514 1.51364 0.91017 1.19497 0.97338 0.91233 0.96783 1.21729 0.90351 1.01325 1.01778 1.21651 0.96059 0.79326 1.02328 1.45388 1.04391 1.10565 1.78855 1.15753 0.83776 0.81055 0.78404 1.91043 1.55059 1.39712 1.58717 1.44652 1.05470 0.97016 1.82316 1.43312 1.04295 0.96307 1.82472 1.17017 0.92022 0.82355 0.92882 1.20385 1.00785 0.89900 1.13786 1.16906 0.86254 0.83580 0.98322 1.91555 1.68356 1.57319 1.93384 1.20721 0.90766 1.00177 1.11132 1.20153 0.85397 0.93184 0.99392 1.98405 1.11615 1.95869 1.96534 1.20280 0.93808 0.96047 1.12471 0.92638 0.96210 0.96650 0.92048 0.92032 0.91458 0.91471 0.77502 0.72253 0.72699 0.83527 0.83735 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -14.31 9.66 -34.44 -0.33 -14.64 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.11 -1.96 5.27 -26.73 -0.14 -2.10 16 11 C 0.13 1.95 5.67 -4.04 -0.02 1.93 16 12 N -0.74 -8.87 5.52 -65.22 -0.36 -9.23 16 13 C 0.71 9.16 8.68 -86.92 -0.75 8.41 16 14 O -0.57 -9.72 17.18 5.29 0.09 -9.62 16 15 N -0.54 -4.93 6.22 27.63 0.17 -4.76 16 16 N -0.54 -3.80 6.45 32.40 0.21 -3.59 16 17 C 0.26 1.85 6.72 -83.80 -0.56 1.29 16 18 C -0.22 -1.49 9.87 -39.31 -0.39 -1.88 16 19 C 0.17 1.26 7.30 -39.45 -0.29 0.97 16 20 F -0.13 -1.05 17.27 2.25 0.04 -1.02 16 21 C -0.21 -1.45 9.80 -39.44 -0.39 -1.84 16 22 C 0.05 0.34 6.32 -39.54 -0.25 0.09 16 23 Cl -0.05 -0.37 28.95 -51.86 -1.50 -1.87 16 24 C -0.20 -1.43 9.26 -39.34 -0.36 -1.80 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 27 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.39 3.59 6.39 -40.82 -0.26 3.33 16 33 H 0.43 3.45 6.70 -182.60 -1.22 2.23 16 34 H 0.43 2.44 6.71 -182.60 -1.23 1.22 16 35 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 37 H 0.14 0.84 6.20 -52.48 -0.33 0.51 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -32.31 337.58 -9.78 -42.10 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.93 Total: 0.87 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -3.70 Total: -8.11 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.79 Total: -44.02 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.31 -9.78 -42.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853677369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.634 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds