Wall clock time and date at job start Tue Mar 31 2020 11:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31529 * 1 3 3 Si 1.86795 * 119.99876 * 2 1 4 4 H 1.48505 * 109.46939 * 269.99381 * 3 2 1 5 5 H 1.48498 * 109.47554 * 30.00133 * 3 2 1 6 6 H 1.48504 * 109.47000 * 150.00026 * 3 2 1 7 7 C 1.38692 * 119.99487 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00787 * 0.02562 * 7 2 1 9 9 O 1.34822 * 120.00065 * 179.97438 * 7 2 1 10 10 C 1.35512 * 117.00212 * 185.05338 * 9 7 2 11 11 C 1.38831 * 120.16445 * 354.40215 * 10 9 7 12 12 C 1.38027 * 120.07250 * 180.02562 * 11 10 9 13 13 C 1.38575 * 120.40211 * 359.97438 * 12 11 10 14 14 C 1.37831 * 120.32161 * 359.74975 * 13 12 11 15 15 C 1.39668 * 119.91871 * 0.50703 * 14 13 12 16 16 C 1.47531 * 120.19561 * 179.76610 * 15 14 13 17 17 O 1.21589 * 119.99955 * 179.72417 * 16 15 14 18 18 N 1.34782 * 120.00295 * 359.72625 * 16 15 14 19 19 C 1.46494 * 120.00664 * 179.97438 * 18 16 15 20 20 H 1.09005 * 115.55635 * 9.31008 * 19 18 16 21 21 C 1.52992 * 117.50062 * 223.62500 * 19 18 16 22 22 C 1.53000 * 117.50248 * 154.99789 * 19 18 16 23 23 H 1.09000 * 117.49436 * 359.97438 * 22 19 18 24 24 C 1.52997 * 117.49822 * 214.98274 * 22 19 18 25 25 F 1.39897 * 109.47132 * 60.00013 * 24 22 19 26 26 F 1.39897 * 109.47022 * 300.00085 * 24 22 19 27 27 F 1.39892 * 109.47044 * 180.02562 * 24 22 19 28 28 H 0.97000 * 119.99636 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.96119 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.79866 * 180.02562 * 12 11 10 31 31 H 1.07994 * 119.83551 * 180.02562 * 13 12 11 32 32 H 1.07999 * 120.03614 * 180.25090 * 14 13 12 33 33 H 0.97007 * 119.99313 * 359.97438 * 18 16 15 34 34 H 1.09005 * 117.49800 * 145.02014 * 21 19 18 35 35 H 1.08996 * 117.50084 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0086 -1.2012 0.0005 8 1 1.4687 -2.1366 0.0005 9 8 3.3569 -1.2013 0.0000 10 6 3.9720 -2.4042 -0.1058 11 6 3.2242 -3.5738 -0.0906 12 6 3.8527 -4.7980 -0.1979 13 6 5.2310 -4.8701 -0.3219 14 6 5.9889 -3.7191 -0.3445 15 6 5.3673 -2.4735 -0.2315 16 6 6.1730 -1.2378 -0.2498 17 8 5.6278 -0.1550 -0.1561 18 7 7.5136 -1.3090 -0.3703 19 6 8.3137 -0.0820 -0.3891 20 1 7.7759 0.8339 -0.1437 21 6 9.4362 0.0137 -1.4242 22 6 9.7743 -0.1841 0.0548 23 1 10.1398 -1.1642 0.3612 24 6 10.3683 1.0071 0.8091 25 9 9.6397 1.2259 1.9831 26 9 10.3061 2.1481 0.0021 27 9 11.7025 0.7366 1.1314 28 1 -0.4849 0.8401 -0.0004 29 1 2.1496 -3.5258 0.0062 30 1 3.2667 -5.7050 -0.1860 31 1 5.7133 -5.8328 -0.4057 32 1 7.0624 -3.7805 -0.4454 33 1 7.9486 -2.1729 -0.4447 34 1 9.6370 0.9926 -1.8598 35 1 9.5797 -0.8364 -2.0911 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871207230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:00 Heat of formation + Delta-G solvation = -156.825581 kcal Electronic energy + Delta-G solvation = -25770.277423 eV Core-core repulsion = 21320.345785 eV Total energy + Delta-G solvation = -4449.931638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.26206 -47.81372 -47.72626 -40.01500 -38.81902 -37.20447 -36.58858 -33.02849 -32.50836 -30.47745 -29.28297 -27.06546 -25.40331 -23.88637 -22.29041 -21.90423 -21.16501 -20.44062 -18.70704 -18.55221 -18.25652 -17.97689 -17.44831 -16.40688 -16.25036 -14.96463 -14.68686 -14.64781 -14.62429 -14.47802 -14.23737 -14.18632 -13.96151 -13.90912 -13.81072 -13.75330 -13.50786 -13.18045 -12.64011 -12.42741 -12.22313 -11.98468 -11.69911 -11.40322 -11.35211 -11.14558 -10.89312 -10.76530 -10.09810 -9.71966 -9.22807 -8.94371 -8.86280 -8.47440 -7.55992 -6.52529 -4.17887 1.45683 2.11220 2.43886 2.88679 3.13237 3.28938 3.34621 3.45521 3.62426 3.68836 3.78650 4.14322 4.30435 4.31235 4.45104 4.54502 4.65071 4.74939 5.03592 5.09021 5.28023 5.30811 5.48795 5.54189 5.64840 5.88843 5.95551 6.28894 6.42367 6.51978 6.73491 6.92372 7.07399 7.40370 7.58072 7.72423 7.88846 8.65332 8.82452 9.44191 10.52291 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.004194 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.210474 B = 6674.724341 C = 8355.774328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.238 1.238 7 C -0.397 4.397 8 H 0.109 0.891 9 O -0.164 6.164 10 C 0.202 3.798 11 C -0.225 4.225 12 C -0.049 4.049 13 C -0.221 4.221 14 C -0.039 4.039 15 C -0.229 4.229 16 C 0.567 3.433 17 O -0.510 6.510 18 N -0.712 5.712 19 C 0.131 3.869 20 H 0.149 0.851 21 C -0.163 4.163 22 C -0.249 4.249 23 H 0.147 0.853 24 C 0.487 3.513 25 F -0.177 7.177 26 F -0.181 7.181 27 F -0.182 7.182 28 H 0.283 0.717 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.399 0.601 34 H 0.119 0.881 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.498 -4.301 -1.466 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.133 4.133 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.161 1.161 7 C -0.472 4.472 8 H 0.126 0.874 9 O -0.064 6.064 10 C 0.144 3.856 11 C -0.244 4.244 12 C -0.067 4.067 13 C -0.240 4.240 14 C -0.058 4.058 15 C -0.234 4.234 16 C 0.358 3.642 17 O -0.384 6.384 18 N -0.365 5.365 19 C 0.023 3.977 20 H 0.166 0.834 21 C -0.201 4.201 22 C -0.270 4.270 23 H 0.165 0.835 24 C 0.433 3.567 25 F -0.158 7.158 26 F -0.162 7.162 27 F -0.163 7.163 28 H 0.093 0.907 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.235 0.765 34 H 0.137 0.863 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.888 -3.075 -1.336 19.184 hybrid contribution 0.600 0.188 0.148 0.646 sum 19.489 -2.887 -1.188 19.737 Atomic orbital electron populations 1.69639 1.05824 1.29068 1.45669 1.24505 0.94980 0.99346 0.94507 0.86203 0.81312 0.80387 0.79647 1.19861 1.21141 1.16118 1.20939 0.77014 0.96828 1.52425 0.87354 1.83769 1.22214 1.24983 1.75389 1.18992 0.90201 0.85849 0.90558 1.21297 1.01436 0.91601 1.10100 1.20987 0.94388 0.96815 0.94544 1.20541 0.94036 0.97320 1.12098 1.20739 0.98034 0.91271 0.95783 1.18709 0.91126 0.92453 1.21145 1.18246 0.80585 0.89684 0.75699 1.90873 1.70662 1.29357 1.47524 1.45314 1.06778 1.07160 1.77234 1.21483 0.84481 0.92289 0.99454 0.83395 1.23709 1.01507 1.05661 0.89263 1.24006 1.03876 0.98496 1.00589 0.83487 1.19444 0.75901 0.83595 0.77801 1.93233 1.77319 1.95353 1.49884 1.93171 1.96124 1.53808 1.73114 1.93179 1.36159 1.93802 1.93183 0.90727 0.84320 0.86731 0.86920 0.86898 0.76525 0.86280 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.82 13.96 55.48 0.77 -24.04 16 2 C 0.07 2.05 5.49 -17.51 -0.10 1.96 16 3 Si 0.90 22.84 28.62 -169.99 -4.86 17.98 16 4 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.24 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.40 -11.13 9.95 30.90 0.31 -10.82 16 8 H 0.11 3.02 5.44 -52.48 -0.29 2.73 16 9 O -0.16 -4.39 6.67 -21.06 -0.14 -4.53 16 10 C 0.20 4.60 6.66 -38.60 -0.26 4.34 16 11 C -0.23 -4.57 9.16 -39.44 -0.36 -4.93 16 12 C -0.05 -0.79 10.03 -39.53 -0.40 -1.19 16 13 C -0.22 -3.21 10.03 -39.61 -0.40 -3.60 16 14 C -0.04 -0.58 9.53 -39.20 -0.37 -0.96 16 15 C -0.23 -4.40 5.89 -104.81 -0.62 -5.02 16 16 C 0.57 10.78 7.76 -12.47 -0.10 10.69 16 17 O -0.51 -12.11 14.73 -16.57 -0.24 -12.35 16 18 N -0.71 -9.46 5.52 -54.85 -0.30 -9.76 16 19 C 0.13 1.57 6.08 -67.94 -0.41 1.16 16 20 H 0.15 2.14 7.40 -51.93 -0.38 1.76 16 21 C -0.16 -1.38 9.85 -26.73 -0.26 -1.64 16 22 C -0.25 -2.26 5.82 -90.62 -0.53 -2.79 16 23 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 24 C 0.49 5.20 3.36 37.16 0.12 5.33 16 25 F -0.18 -2.25 17.27 2.25 0.04 -2.21 16 26 F -0.18 -2.02 15.89 2.25 0.04 -1.98 16 27 F -0.18 -1.91 17.32 2.25 0.04 -1.87 16 28 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.14 2.93 5.64 -52.49 -0.30 2.64 16 30 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.11 1.18 6.40 -52.49 -0.34 0.85 16 33 H 0.40 3.89 6.86 -40.82 -0.28 3.61 16 34 H 0.12 0.97 7.22 -51.93 -0.37 0.59 16 35 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -32.15 320.56 -5.98 -38.13 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -2.78 Total: 3.30 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.37 Total: -7.49 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.47 Total: -33.80 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.38 Total: -16.88 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.11 Total: -6.07 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.86 Total: 17.98 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.15 -5.98 -38.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871207230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.696 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds