Wall clock time and date at job start Tue Mar 31 2020 11:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31529 * 1 3 3 Si 1.86795 * 119.99876 * 2 1 4 4 H 1.48505 * 109.46939 * 269.99381 * 3 2 1 5 5 H 1.48498 * 109.47554 * 30.00133 * 3 2 1 6 6 H 1.48504 * 109.47000 * 150.00026 * 3 2 1 7 7 C 1.38692 * 119.99487 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00787 * 0.02562 * 7 2 1 9 9 O 1.34822 * 120.00065 * 179.97438 * 7 2 1 10 10 C 1.35512 * 117.00212 * 185.05338 * 9 7 2 11 11 C 1.38831 * 120.16445 * 354.40215 * 10 9 7 12 12 C 1.38027 * 120.07250 * 180.02562 * 11 10 9 13 13 C 1.38575 * 120.40211 * 359.97438 * 12 11 10 14 14 C 1.37831 * 120.32161 * 359.74975 * 13 12 11 15 15 C 1.39668 * 119.91871 * 0.50703 * 14 13 12 16 16 C 1.47531 * 120.19561 * 179.76610 * 15 14 13 17 17 O 1.21589 * 119.99955 * 179.72417 * 16 15 14 18 18 N 1.34782 * 120.00295 * 359.72625 * 16 15 14 19 19 C 1.46494 * 120.00664 * 179.97438 * 18 16 15 20 20 H 1.09005 * 115.55635 * 9.31008 * 19 18 16 21 21 C 1.52992 * 117.50062 * 223.62500 * 19 18 16 22 22 C 1.53000 * 117.50248 * 154.99789 * 19 18 16 23 23 H 1.09000 * 117.49436 * 359.97438 * 22 19 18 24 24 C 1.52997 * 117.49822 * 214.98274 * 22 19 18 25 25 F 1.39897 * 109.47132 * 60.00013 * 24 22 19 26 26 F 1.39897 * 109.47022 * 300.00085 * 24 22 19 27 27 F 1.39892 * 109.47044 * 180.02562 * 24 22 19 28 28 H 0.97000 * 119.99636 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.96119 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.79866 * 180.02562 * 12 11 10 31 31 H 1.07994 * 119.83551 * 180.02562 * 13 12 11 32 32 H 1.07999 * 120.03614 * 180.25090 * 14 13 12 33 33 H 0.97007 * 119.99313 * 359.97438 * 18 16 15 34 34 H 1.09005 * 117.49800 * 145.02014 * 21 19 18 35 35 H 1.08996 * 117.50084 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0086 -1.2012 0.0005 8 1 1.4687 -2.1366 0.0005 9 8 3.3569 -1.2013 0.0000 10 6 3.9720 -2.4042 -0.1058 11 6 3.2242 -3.5738 -0.0906 12 6 3.8527 -4.7980 -0.1979 13 6 5.2310 -4.8701 -0.3219 14 6 5.9889 -3.7191 -0.3445 15 6 5.3673 -2.4735 -0.2315 16 6 6.1730 -1.2378 -0.2498 17 8 5.6278 -0.1550 -0.1561 18 7 7.5136 -1.3090 -0.3703 19 6 8.3137 -0.0820 -0.3891 20 1 7.7759 0.8339 -0.1437 21 6 9.4362 0.0137 -1.4242 22 6 9.7743 -0.1841 0.0548 23 1 10.1398 -1.1642 0.3612 24 6 10.3683 1.0071 0.8091 25 9 9.6397 1.2259 1.9831 26 9 10.3061 2.1481 0.0021 27 9 11.7025 0.7366 1.1314 28 1 -0.4849 0.8401 -0.0004 29 1 2.1496 -3.5258 0.0062 30 1 3.2667 -5.7050 -0.1860 31 1 5.7133 -5.8328 -0.4057 32 1 7.0624 -3.7805 -0.4454 33 1 7.9486 -2.1729 -0.4447 34 1 9.6370 0.9926 -1.8598 35 1 9.5797 -0.8364 -2.0911 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871207230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:00 Heat of formation + Delta-G solvation = -177.916946 kcal Electronic energy + Delta-G solvation = -25771.192014 eV Core-core repulsion = 21320.345785 eV Total energy + Delta-G solvation = -4450.846229 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.14055 -48.67849 -48.64000 -41.47151 -40.20545 -38.43071 -38.09516 -34.54593 -34.28910 -31.85096 -30.79489 -27.95993 -27.29169 -25.19370 -23.49835 -22.79770 -22.47233 -21.78726 -19.86058 -19.68841 -19.55736 -19.33062 -18.63689 -17.81415 -17.42360 -16.56941 -16.18560 -15.97124 -15.80209 -15.54628 -15.52334 -15.44886 -15.31109 -15.07592 -14.84972 -14.79870 -14.65392 -14.47466 -14.22067 -14.03950 -13.60866 -13.16740 -12.83731 -12.73170 -12.66522 -12.52963 -12.39899 -12.04383 -11.94406 -11.54474 -10.97400 -10.80381 -10.06715 -9.79595 -9.14733 -8.58535 -6.27316 0.03096 0.65674 1.24661 1.29229 1.54755 1.57318 1.84769 2.02301 2.28447 2.34002 2.75389 2.84278 2.92236 3.01181 3.16044 3.29260 3.52542 3.71726 3.80569 4.01079 4.03930 4.25448 4.48271 4.50404 4.63555 4.78212 4.82105 4.85661 5.06407 5.28641 5.37843 5.47620 5.62077 5.70141 5.83608 6.15904 6.53982 6.78548 7.31136 7.57974 8.51918 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.004194 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.210474 B = 6674.724341 C = 8355.774328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.027 3.973 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.403 4.403 8 H 0.093 0.907 9 O -0.210 6.210 10 C 0.162 3.838 11 C -0.252 4.252 12 C -0.041 4.041 13 C -0.189 4.189 14 C -0.027 4.027 15 C -0.234 4.234 16 C 0.561 3.439 17 O -0.568 6.568 18 N -0.683 5.683 19 C 0.089 3.911 20 H 0.112 0.888 21 C -0.133 4.133 22 C -0.223 4.223 23 H 0.181 0.819 24 C 0.481 3.519 25 F -0.193 7.193 26 F -0.186 7.186 27 F -0.178 7.178 28 H 0.286 0.714 29 H 0.114 0.886 30 H 0.150 0.850 31 H 0.168 0.832 32 H 0.171 0.829 33 H 0.420 0.580 34 H 0.122 0.878 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.065 -7.646 -2.385 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.479 4.479 8 H 0.110 0.890 9 O -0.114 6.114 10 C 0.108 3.892 11 C -0.271 4.271 12 C -0.059 4.059 13 C -0.207 4.207 14 C -0.045 4.045 15 C -0.238 4.238 16 C 0.352 3.648 17 O -0.447 6.447 18 N -0.337 5.337 19 C -0.018 4.018 20 H 0.130 0.870 21 C -0.171 4.171 22 C -0.244 4.244 23 H 0.198 0.802 24 C 0.427 3.573 25 F -0.175 7.175 26 F -0.168 7.168 27 F -0.159 7.159 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.168 0.832 31 H 0.186 0.814 32 H 0.189 0.811 33 H 0.260 0.740 34 H 0.140 0.860 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 23.550 -6.484 -2.265 24.531 hybrid contribution -0.375 0.838 0.407 1.004 sum 23.175 -5.647 -1.857 23.925 Atomic orbital electron populations 1.69685 1.06423 1.29556 1.49406 1.25025 0.95611 1.01364 0.95339 0.85434 0.79081 0.78603 0.79074 1.20051 1.19161 1.19079 1.20897 0.78376 0.96283 1.52324 0.88997 1.83763 1.20811 1.27024 1.79779 1.19784 0.92154 0.85662 0.91553 1.21330 1.00588 0.92987 1.12192 1.21465 0.96047 0.96130 0.92304 1.21255 0.92948 0.99522 1.06981 1.21383 1.00949 0.89104 0.93063 1.19193 0.89885 0.94767 1.20001 1.18392 0.82372 0.88790 0.75279 1.90862 1.72271 1.31327 1.50285 1.44894 1.04813 1.08793 1.75185 1.21434 0.85556 0.90627 1.04200 0.86984 1.23862 0.96881 1.07269 0.89110 1.24080 1.00382 0.99036 1.00876 0.80212 1.19756 0.76020 0.84077 0.77431 1.93206 1.77777 1.95509 1.50985 1.93164 1.96149 1.54345 1.73110 1.93188 1.35831 1.93740 1.93154 0.90452 0.86836 0.83232 0.81427 0.81142 0.73965 0.85983 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.61 13.96 21.62 0.30 -55.31 16 2 C 0.03 1.63 5.49 84.85 0.47 2.10 16 3 Si 0.95 50.77 28.62 68.60 1.96 52.74 16 4 H -0.27 -14.39 7.11 99.48 0.71 -13.68 16 5 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -15.23 7.11 99.48 0.71 -14.52 16 7 C -0.40 -24.43 9.95 67.93 0.68 -23.75 16 8 H 0.09 5.63 5.44 -2.91 -0.02 5.61 16 9 O -0.21 -12.05 6.67 0.84 0.01 -12.04 16 10 C 0.16 7.60 6.66 22.91 0.15 7.75 16 11 C -0.25 -10.38 9.16 22.36 0.20 -10.18 16 12 C -0.04 -1.19 10.03 22.30 0.22 -0.97 16 13 C -0.19 -4.21 10.03 22.25 0.22 -3.98 16 14 C -0.03 -0.64 9.53 22.52 0.21 -0.42 16 15 C -0.23 -8.63 5.89 -19.99 -0.12 -8.74 16 16 C 0.56 21.08 7.76 86.69 0.67 21.76 16 17 O -0.57 -28.38 14.73 16.90 0.25 -28.13 16 18 N -0.68 -16.14 5.52 -445.72 -2.46 -18.60 16 19 C 0.09 1.97 6.08 44.99 0.27 2.24 16 20 H 0.11 3.37 7.40 -2.38 -0.02 3.36 16 21 C -0.13 -1.73 9.85 30.59 0.30 -1.43 16 22 C -0.22 -3.25 5.82 -10.79 -0.06 -3.31 16 23 H 0.18 1.46 8.14 -2.39 -0.02 1.44 16 24 C 0.48 9.32 3.36 71.98 0.24 9.56 16 25 F -0.19 -4.81 17.27 44.97 0.78 -4.03 16 26 F -0.19 -3.93 15.89 44.97 0.71 -3.21 16 27 F -0.18 -3.26 17.32 44.97 0.78 -2.48 16 28 H 0.29 16.08 8.31 -92.71 -0.77 15.31 16 29 H 0.11 5.19 5.64 -2.91 -0.02 5.17 16 30 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.17 2.11 6.40 -2.91 -0.02 2.09 16 33 H 0.42 5.80 6.86 -92.70 -0.64 5.16 16 34 H 0.12 1.59 7.22 -2.38 -0.02 1.58 16 35 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -81.17 320.56 6.34 -74.82 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 0.54 Total: 5.61 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 3.47 Total: -9.37 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -2.16 Total: -73.90 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: 0.25 Total: -40.17 kcal Atomic # 9 Polarization: -11.99 SS G_CDS: 2.27 Total: -9.72 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 1.96 Total: 52.74 kcal Total: -81.17 6.34 -74.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871207230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.092 kcal (2) G-P(sol) polarization free energy of solvation -81.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds