Wall clock time and date at job start Tue Mar 31 2020 11:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99571 * 2 1 4 4 H 1.48500 * 109.47218 * 269.99572 * 3 2 1 5 5 H 1.48499 * 109.47274 * 30.00282 * 3 2 1 6 6 H 1.48503 * 109.47081 * 149.99775 * 3 2 1 7 7 C 1.37875 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99473 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00431 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47037 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47101 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00071 * 180.02562 * 12 11 10 14 14 O 1.21597 * 119.99855 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00528 * 179.97438 * 13 12 11 16 16 N 1.40100 * 119.99482 * 359.97438 * 15 13 12 17 17 C 1.39755 * 120.00004 * 180.02562 * 16 15 13 18 18 C 1.38914 * 120.06041 * 359.44981 * 17 16 15 19 19 C 1.38122 * 119.98110 * 179.72398 * 18 17 16 20 20 C 1.38264 * 120.11506 * 0.57226 * 19 18 17 21 21 C 1.38492 * 120.13344 * 359.68162 * 20 19 18 22 22 F 1.35097 * 119.99812 * 180.02562 * 21 20 19 23 23 C 1.38430 * 120.00780 * 0.04217 * 21 20 19 24 24 Cl 1.73601 * 120.05082 * 179.97438 * 23 21 20 25 25 H 0.97003 * 120.00184 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47142 * 59.99032 * 9 7 2 27 27 H 1.09005 * 109.46765 * 299.99478 * 9 7 2 28 28 H 1.09004 * 109.47471 * 59.99987 * 10 9 7 29 29 H 1.08992 * 109.47445 * 299.99373 * 10 9 7 30 30 H 1.08995 * 109.47018 * 59.99499 * 11 10 9 31 31 H 1.09005 * 109.46911 * 299.99932 * 11 10 9 32 32 H 0.97000 * 120.00569 * 359.97438 * 12 11 10 33 33 H 0.96995 * 120.00764 * 179.97438 * 15 13 12 34 34 H 0.97000 * 120.00702 * 359.72387 * 16 15 13 35 35 H 1.08000 * 120.00946 * 359.97438 * 18 17 16 36 36 H 1.07995 * 119.94172 * 180.27875 * 19 18 17 37 37 H 1.07999 * 119.93750 * 179.70274 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4325 -6.1005 0.0018 13 6 1.9833 -7.3712 0.0019 14 8 0.7878 -7.5935 0.0020 15 7 2.8591 -8.3956 0.0020 16 7 4.2365 -8.1396 0.0013 17 6 5.1447 -9.2017 0.0009 18 6 4.6832 -10.5119 0.0125 19 6 5.5822 -11.5605 0.0062 20 6 6.9417 -11.3086 0.0003 21 6 7.4071 -10.0043 -0.0060 22 9 8.7361 -9.7614 -0.0123 23 6 6.5108 -8.9494 -0.0055 24 17 7.0930 -7.3139 -0.0128 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6042 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 0.8534 -5.0451 -0.8885 31 1 0.8541 -5.0446 0.8915 32 1 3.3862 -5.9233 0.0014 33 1 2.5359 -9.3102 0.0024 34 1 4.5599 -7.2251 -0.0032 35 1 3.6217 -10.7106 0.0224 36 1 5.2227 -12.5788 0.0108 37 1 7.6421 -12.1307 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875236638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:05 Heat of formation + Delta-G solvation = -22.889493 kcal Electronic energy + Delta-G solvation = -22561.189569 eV Core-core repulsion = 18701.155267 eV Total energy + Delta-G solvation = -3860.034303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.36247 -40.62050 -39.54030 -36.94300 -36.57748 -35.61371 -33.38639 -32.42233 -31.16082 -30.73826 -28.61511 -26.77427 -23.85660 -23.14367 -22.93856 -21.00037 -20.70812 -19.18076 -18.97186 -17.15355 -17.07570 -16.71200 -16.34189 -16.21764 -15.85033 -15.44327 -15.23954 -14.71092 -14.49740 -14.48271 -14.15564 -13.87612 -13.64860 -12.68174 -12.45366 -12.33636 -12.16601 -11.92960 -11.89218 -11.68638 -11.39469 -10.94028 -10.83409 -10.66959 -10.51001 -9.94462 -9.83895 -9.52499 -9.21768 -9.17475 -9.00799 -8.40509 -7.81823 -6.05159 -4.08454 0.50501 0.74909 1.42073 1.67085 2.91228 2.91845 3.07016 3.28836 3.35444 3.38147 3.67132 4.19645 4.27694 4.31604 4.41813 4.73139 4.98686 5.27700 5.30388 5.30799 5.46700 5.53795 5.69158 5.78002 5.90190 6.06873 6.19483 6.28102 6.51364 6.60458 6.83811 6.90017 6.97446 7.58905 7.70675 7.87370 7.92992 8.31404 8.35439 8.97965 9.56012 11.06073 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.002557 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.348478 B =10948.192547 C =12501.774969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.131 3.869 12 N -0.736 5.736 13 C 0.710 3.290 14 O -0.570 6.570 15 N -0.537 5.537 16 N -0.535 5.535 17 C 0.260 3.740 18 C -0.199 4.199 19 C -0.029 4.029 20 C -0.203 4.203 21 C 0.165 3.835 22 F -0.123 7.123 23 C -0.156 4.156 24 Cl -0.045 7.045 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.389 0.611 33 H 0.432 0.568 34 H 0.428 0.572 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.393 -25.270 0.003 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C 0.009 3.991 12 N -0.392 5.392 13 C 0.410 3.590 14 O -0.444 6.444 15 N -0.293 5.293 16 N -0.263 5.263 17 C 0.152 3.848 18 C -0.223 4.223 19 C -0.048 4.048 20 C -0.224 4.224 21 C 0.145 3.855 22 F -0.102 7.102 23 C -0.190 4.190 24 Cl -0.016 7.016 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.223 0.777 33 H 0.277 0.723 34 H 0.273 0.727 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.172 -24.919 0.012 28.186 hybrid contribution 1.265 1.272 -0.021 1.795 sum 14.438 -23.647 -0.009 27.706 Atomic orbital electron populations 1.69963 1.06054 1.26748 1.50449 1.25025 0.94863 0.99320 0.95222 0.86579 0.79805 0.83402 0.78123 1.20636 1.21173 1.19890 1.21184 0.92984 0.90899 1.51094 0.92653 1.19021 0.93784 0.90707 0.97770 1.21924 0.99915 0.93210 1.00972 1.21658 0.91175 0.83887 1.02411 1.45480 1.10477 1.04611 1.78631 1.15774 0.84210 0.80622 0.78424 1.91046 1.12022 1.82568 1.58731 1.44642 0.92523 1.09712 1.82459 1.43485 0.93726 1.07283 1.81817 1.17039 0.86009 0.88001 0.93723 1.20511 1.00756 0.89649 1.11339 1.20826 0.91557 0.99327 0.93116 1.20926 0.97045 0.94377 1.10084 1.17039 0.77065 0.92268 0.99176 1.91555 1.30203 1.95153 1.93254 1.20117 0.91389 0.86972 1.20525 1.98397 1.88173 1.17602 1.97419 0.92883 0.96172 0.96156 0.92651 0.92650 0.91391 0.91393 0.77685 0.72271 0.72721 0.84739 0.84028 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 11 C 0.13 2.22 5.67 -4.04 -0.02 2.20 16 12 N -0.74 -10.19 5.52 -65.22 -0.36 -10.55 16 13 C 0.71 10.04 8.68 -86.92 -0.75 9.29 16 14 O -0.57 -10.22 17.18 5.28 0.09 -10.13 16 15 N -0.54 -5.47 6.22 27.63 0.17 -5.30 16 16 N -0.53 -4.88 6.41 32.43 0.21 -4.67 16 17 C 0.26 2.18 6.72 -83.74 -0.56 1.62 16 18 C -0.20 -1.28 9.48 -39.37 -0.37 -1.65 16 19 C -0.03 -0.15 10.04 -39.61 -0.40 -0.55 16 20 C -0.20 -1.25 10.02 -39.48 -0.40 -1.65 16 21 C 0.17 1.40 7.27 -39.42 -0.29 1.12 16 22 F -0.12 -1.17 16.83 2.25 0.04 -1.13 16 23 C -0.16 -1.41 6.34 -39.26 -0.25 -1.66 16 24 Cl -0.04 -0.43 27.25 -51.86 -1.41 -1.84 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.39 4.49 6.39 -40.82 -0.26 4.23 16 33 H 0.43 3.54 6.70 -182.60 -1.22 2.32 16 34 H 0.43 3.90 5.37 -182.60 -0.98 2.92 16 35 H 0.13 0.64 6.20 -52.49 -0.33 0.32 16 36 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 37 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -32.32 338.28 -9.90 -42.22 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.72 Total: 2.27 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -3.73 Total: -6.48 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.76 Total: -46.34 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.41 Total: -1.84 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.32 -9.90 -42.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875236638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.334 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds