Wall clock time and date at job start Tue Mar 31 2020 11:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99571 * 2 1 4 4 H 1.48500 * 109.47218 * 269.99572 * 3 2 1 5 5 H 1.48499 * 109.47274 * 30.00282 * 3 2 1 6 6 H 1.48503 * 109.47081 * 149.99775 * 3 2 1 7 7 C 1.37875 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99473 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00431 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47037 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47101 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00071 * 180.02562 * 12 11 10 14 14 O 1.21597 * 119.99855 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00528 * 179.97438 * 13 12 11 16 16 N 1.40100 * 119.99482 * 359.97438 * 15 13 12 17 17 C 1.39755 * 120.00004 * 180.02562 * 16 15 13 18 18 C 1.38914 * 120.06041 * 359.44981 * 17 16 15 19 19 C 1.38122 * 119.98110 * 179.72398 * 18 17 16 20 20 C 1.38264 * 120.11506 * 0.57226 * 19 18 17 21 21 C 1.38492 * 120.13344 * 359.68162 * 20 19 18 22 22 F 1.35097 * 119.99812 * 180.02562 * 21 20 19 23 23 C 1.38430 * 120.00780 * 0.04217 * 21 20 19 24 24 Cl 1.73601 * 120.05082 * 179.97438 * 23 21 20 25 25 H 0.97003 * 120.00184 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47142 * 59.99032 * 9 7 2 27 27 H 1.09005 * 109.46765 * 299.99478 * 9 7 2 28 28 H 1.09004 * 109.47471 * 59.99987 * 10 9 7 29 29 H 1.08992 * 109.47445 * 299.99373 * 10 9 7 30 30 H 1.08995 * 109.47018 * 59.99499 * 11 10 9 31 31 H 1.09005 * 109.46911 * 299.99932 * 11 10 9 32 32 H 0.97000 * 120.00569 * 359.97438 * 12 11 10 33 33 H 0.96995 * 120.00764 * 179.97438 * 15 13 12 34 34 H 0.97000 * 120.00702 * 359.72387 * 16 15 13 35 35 H 1.08000 * 120.00946 * 359.97438 * 18 17 16 36 36 H 1.07995 * 119.94172 * 180.27875 * 19 18 17 37 37 H 1.07999 * 119.93750 * 179.70274 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4325 -6.1005 0.0018 13 6 1.9833 -7.3712 0.0019 14 8 0.7878 -7.5935 0.0020 15 7 2.8591 -8.3956 0.0020 16 7 4.2365 -8.1396 0.0013 17 6 5.1447 -9.2017 0.0009 18 6 4.6832 -10.5119 0.0125 19 6 5.5822 -11.5605 0.0062 20 6 6.9417 -11.3086 0.0003 21 6 7.4071 -10.0043 -0.0060 22 9 8.7361 -9.7614 -0.0123 23 6 6.5108 -8.9494 -0.0055 24 17 7.0930 -7.3139 -0.0128 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6042 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 0.8534 -5.0451 -0.8885 31 1 0.8541 -5.0446 0.8915 32 1 3.3862 -5.9233 0.0014 33 1 2.5359 -9.3102 0.0024 34 1 4.5599 -7.2251 -0.0032 35 1 3.6217 -10.7106 0.0224 36 1 5.2227 -12.5788 0.0108 37 1 7.6421 -12.1307 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875236638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:05 Heat of formation + Delta-G solvation = -43.528836 kcal Electronic energy + Delta-G solvation = -22562.084558 eV Core-core repulsion = 18701.155267 eV Total energy + Delta-G solvation = -3860.929292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.00954 -41.56330 -40.30998 -37.63265 -37.40075 -37.07305 -35.21710 -33.40259 -32.65400 -31.37722 -29.29884 -28.53969 -25.26749 -24.07915 -23.61051 -22.37660 -22.03127 -20.05514 -19.86747 -18.52524 -17.83174 -17.75824 -17.30549 -17.09491 -16.80790 -16.62344 -16.25349 -16.13027 -15.82216 -15.41491 -15.18977 -14.74869 -14.32388 -14.24359 -13.76847 -13.65820 -13.18080 -13.13795 -12.77081 -12.68718 -12.57300 -12.40003 -12.38964 -12.06857 -11.88231 -11.71060 -11.43242 -11.20178 -10.65886 -10.55735 -10.19067 -9.79492 -8.52609 -8.20252 -6.31294 -0.04638 0.19660 0.63484 1.00365 1.41135 1.41988 1.52865 1.85339 1.85996 2.41301 2.48326 3.08194 3.13735 3.51064 3.71479 3.82945 4.06335 4.19839 4.23133 4.42259 4.52348 4.72162 4.78799 4.90328 4.92766 5.01699 5.10818 5.16751 5.29911 5.34264 5.50626 5.65430 5.70110 5.83574 5.84860 6.17434 6.22017 6.85646 6.91189 7.26942 7.38189 8.91730 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.002557 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.348478 B =10948.192547 C =12501.774969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.104 4.104 11 C 0.146 3.854 12 N -0.729 5.729 13 C 0.711 3.289 14 O -0.611 6.611 15 N -0.517 5.517 16 N -0.539 5.539 17 C 0.245 3.755 18 C -0.197 4.197 19 C -0.019 4.019 20 C -0.193 4.193 21 C 0.143 3.857 22 F -0.135 7.135 23 C -0.167 4.167 24 Cl -0.059 7.059 25 H 0.263 0.737 26 H -0.005 1.005 27 H -0.005 1.005 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.402 0.598 33 H 0.443 0.557 34 H 0.427 0.573 35 H 0.153 0.847 36 H 0.179 0.821 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.088 -26.946 0.007 31.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.013 4.013 10 C -0.142 4.142 11 C 0.022 3.978 12 N -0.386 5.386 13 C 0.410 3.590 14 O -0.488 6.488 15 N -0.273 5.273 16 N -0.269 5.269 17 C 0.139 3.861 18 C -0.220 4.220 19 C -0.038 4.038 20 C -0.214 4.214 21 C 0.122 3.878 22 F -0.113 7.113 23 C -0.201 4.201 24 Cl -0.030 7.030 25 H 0.072 0.928 26 H 0.013 0.987 27 H 0.013 0.987 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.239 0.761 33 H 0.291 0.709 34 H 0.271 0.729 35 H 0.170 0.830 36 H 0.196 0.804 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 14.945 -26.658 0.015 30.561 hybrid contribution 0.785 1.636 -0.022 1.814 sum 15.729 -25.022 -0.007 29.555 Atomic orbital electron populations 1.70102 1.07838 1.27782 1.51653 1.25986 0.95739 1.03421 0.94831 0.85451 0.78688 0.78495 0.78435 1.19860 1.20995 1.18588 1.21668 0.93684 0.92077 1.50465 0.91720 1.18923 0.94373 0.92653 0.95338 1.21624 0.98595 0.91911 1.02070 1.21225 0.91129 0.84031 1.01414 1.45133 1.10657 1.04042 1.78746 1.15736 0.84017 0.80960 0.78270 1.91022 1.13967 1.83308 1.60523 1.44237 0.92970 1.09238 1.80866 1.43442 0.92844 1.07630 1.82981 1.17206 0.85541 0.88525 0.94813 1.20873 1.02069 0.89058 1.10035 1.21261 0.90743 1.00698 0.91091 1.21297 0.98115 0.93889 1.08104 1.17354 0.76641 0.93173 1.00602 1.91525 1.30946 1.95312 1.93526 1.20269 0.91872 0.86511 1.21448 1.98386 1.88368 1.18755 1.97538 0.92795 0.98671 0.98656 0.91482 0.91459 0.92506 0.92512 0.76133 0.70910 0.72878 0.82987 0.80388 0.81720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.54 -29.94 9.11 25.60 0.23 -29.70 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -3.91 5.27 30.60 0.16 -3.75 16 11 C 0.15 4.97 5.67 86.38 0.49 5.46 16 12 N -0.73 -19.66 5.52 -478.52 -2.64 -22.30 16 13 C 0.71 19.59 8.68 179.06 1.55 21.14 16 14 O -0.61 -21.87 17.18 -4.02 -0.07 -21.94 16 15 N -0.52 -9.76 6.22 -184.74 -1.15 -10.91 16 16 N -0.54 -9.07 6.41 -51.31 -0.33 -9.40 16 17 C 0.24 3.68 6.72 38.20 0.26 3.94 16 18 C -0.20 -1.94 9.48 22.40 0.21 -1.73 16 19 C -0.02 -0.12 10.04 22.25 0.22 0.10 16 20 C -0.19 -1.81 10.02 22.34 0.22 -1.59 16 21 C 0.14 2.22 7.27 22.38 0.16 2.39 16 22 F -0.13 -2.47 16.83 44.97 0.76 -1.71 16 23 C -0.17 -2.86 6.34 22.48 0.14 -2.71 16 24 Cl -0.06 -1.12 27.25 -2.72 -0.07 -1.20 16 25 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 26 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.00 -0.28 8.14 -2.38 -0.02 -0.29 16 28 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.40 8.80 6.39 -92.71 -0.59 8.20 16 33 H 0.44 6.36 6.70 -213.33 -1.43 4.93 16 34 H 0.43 7.32 5.37 -213.32 -1.15 6.17 16 35 H 0.15 0.93 6.20 -2.91 -0.02 0.91 16 36 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 37 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -70.99 338.28 1.05 -69.94 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -2.02 Total: 12.82 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 4.27 Total: -4.70 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -3.83 Total: -98.94 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.07 Total: -21.94 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.76 Total: -1.71 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.20 kcal Total: -70.99 1.05 -69.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875236638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.410 kcal (2) G-P(sol) polarization free energy of solvation -70.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds