Wall clock time and date at job start Tue Mar 31 2020 10:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.88193 * 2 1 4 4 C 1.51163 * 109.65505 * 120.77138 * 2 1 3 5 5 S 1.75751 * 125.35469 * 289.26779 * 4 2 1 6 6 C 1.75741 * 91.04479 * 179.83172 * 5 4 2 7 7 C 1.32906 * 109.57496 * 0.07297 * 6 5 4 8 8 C 1.34632 * 124.54569 * 109.29320 * 4 2 1 9 9 C 1.52253 * 123.14289 * 0.30096 * 8 4 2 10 10 C 1.53002 * 109.18427 * 340.87066 * 9 8 4 11 11 N 1.47073 * 108.94777 * 46.96144 * 10 9 8 12 12 S 1.65600 * 121.09426 * 115.15077 * 11 10 9 13 13 O 1.42100 * 104.27364 * 333.92488 * 12 11 10 14 14 O 1.42105 * 104.27508 * 206.06721 * 12 11 10 15 15 C 1.81394 * 104.45042 * 89.99739 * 12 11 10 16 16 C 1.52997 * 109.47321 * 179.97438 * 15 12 11 17 17 C 1.50694 * 109.47460 * 179.97438 * 16 15 12 18 18 H 1.08002 * 120.00179 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00472 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47339 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00306 * 21 19 17 24 24 H 1.48504 * 109.46636 * 59.99865 * 21 19 17 25 25 H 1.08998 * 109.46671 * 180.92922 * 1 2 3 26 26 H 1.08997 * 109.47159 * 300.93156 * 1 2 3 27 27 H 1.08999 * 109.46918 * 60.92927 * 1 2 3 28 28 H 1.07997 * 125.21335 * 180.08621 * 6 5 4 29 29 H 1.07999 * 122.11300 * 180.02562 * 7 6 5 30 30 H 1.09006 * 109.51499 * 220.96309 * 9 8 4 31 31 H 1.08995 * 109.57037 * 100.82067 * 9 8 4 32 32 H 1.08998 * 109.56007 * 287.11821 * 10 9 8 33 33 H 1.09000 * 109.64135 * 166.84917 * 10 9 8 34 34 H 1.09003 * 109.47694 * 59.99800 * 15 12 11 35 35 H 1.08999 * 109.47482 * 299.99994 * 15 12 11 36 36 H 1.09005 * 109.46800 * 60.00342 * 16 15 12 37 37 H 1.08998 * 109.47382 * 300.00141 * 16 15 12 38 38 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0251 0.0000 4 6 2.0384 -0.7283 1.2231 5 16 1.9350 -0.1371 2.8750 6 6 2.7266 -1.5860 3.4772 7 6 3.0125 -2.3925 2.4603 8 6 2.6403 -1.9324 1.1995 9 6 2.8901 -2.7131 -0.0835 10 6 1.9688 -2.1812 -1.1832 11 7 2.0295 -0.7117 -1.1877 12 16 2.6457 0.1148 -2.4837 13 8 3.5457 -0.8033 -3.0890 14 8 3.1096 1.3387 -1.9303 15 6 1.2134 0.4046 -3.5583 16 6 1.6584 1.1707 -4.8057 17 6 0.4686 1.4109 -5.6988 18 1 -0.5073 1.0526 -5.4062 19 6 0.6260 2.0872 -6.8900 20 7 1.8145 2.5231 -7.2464 21 14 -0.8487 2.3844 -7.9974 22 1 -0.4168 3.1280 -9.2079 23 1 -1.4362 1.0813 -8.3997 24 1 -1.8656 3.1806 -7.2644 25 1 -0.3632 -1.0275 0.0167 26 1 -0.3633 0.5282 0.8815 27 1 -0.3633 0.4993 -0.8982 28 1 2.9467 -1.7898 4.5147 29 1 3.5029 -3.3442 2.6027 30 1 2.6819 -3.7695 0.0866 31 1 3.9294 -2.5913 -0.3885 32 1 0.9457 -2.5035 -0.9897 33 1 2.2948 -2.5628 -2.1507 34 1 0.4676 0.9895 -3.0200 35 1 0.7813 -0.5515 -3.8536 36 1 2.4043 0.5861 -5.3443 37 1 2.0902 2.1269 -4.5101 38 1 1.9254 2.9986 -8.0847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882712221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:11 Heat of formation + Delta-G solvation = -46.444594 kcal Electronic energy + Delta-G solvation = -22321.130765 eV Core-core repulsion = 18996.039168 eV Total energy + Delta-G solvation = -3325.091597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.45971 -36.71849 -36.18191 -35.44960 -33.91149 -32.46747 -31.17893 -30.35869 -27.68910 -25.63201 -24.63602 -23.17965 -21.75059 -21.10442 -19.51494 -18.03854 -17.46276 -16.96200 -16.40422 -15.98565 -15.54245 -15.21071 -14.93358 -14.57180 -14.17149 -13.71513 -13.60833 -13.43261 -13.16861 -13.14750 -12.52143 -12.16972 -12.11467 -11.89470 -11.77570 -11.74000 -11.61735 -11.60416 -11.18204 -11.08402 -11.04663 -10.95714 -10.66273 -10.44422 -10.38887 -9.79095 -9.40130 -8.91638 -8.69864 -8.51291 -8.41524 -6.13498 -4.19359 0.66263 0.86742 1.49404 1.85826 2.54202 2.95623 3.26413 3.31392 3.33061 4.26537 4.36263 4.37693 4.52575 4.64349 4.88616 4.98619 5.07222 5.08618 5.17137 5.21541 5.33144 5.35407 5.43959 5.60502 5.65884 5.67770 5.76511 5.83715 5.90043 6.01993 6.14513 6.28227 6.43613 6.47044 6.57468 7.27954 7.33908 7.79085 8.15865 8.83770 9.45427 10.97484 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.003427 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.728197 B = 8168.477248 C = 8465.932954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.217 3.783 3 H 0.115 0.885 4 C -0.181 4.181 5 S 0.106 5.894 6 C -0.219 4.219 7 C -0.127 4.127 8 C -0.096 4.096 9 C -0.072 4.072 10 C 0.121 3.879 11 N -1.000 6.000 12 S 2.589 3.411 13 O -0.960 6.960 14 O -0.962 6.962 15 C -0.587 4.587 16 C 0.028 3.972 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.285 1.285 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.163 0.837 29 H 0.137 0.863 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 -10.259 20.209 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.108 3.892 3 H 0.133 0.867 4 C -0.300 4.300 5 S 0.371 5.629 6 C -0.354 4.354 7 C -0.157 4.157 8 C -0.108 4.108 9 C -0.113 4.113 10 C -0.004 4.004 11 N -0.836 5.836 12 S 2.689 3.311 13 O -0.951 6.951 14 O -0.953 6.953 15 C -0.721 4.721 16 C -0.011 4.011 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.728 3.272 22 H -0.211 1.211 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.181 0.819 29 H 0.155 0.845 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.179 -8.611 20.695 22.446 hybrid contribution -0.793 -1.204 -1.192 1.871 sum -1.972 -9.814 19.502 21.922 Atomic orbital electron populations 1.22252 0.93673 1.03213 1.03121 1.19476 0.93886 0.95574 0.80228 0.86701 1.24882 1.07817 0.99671 0.97629 1.84133 1.59401 1.21017 0.98398 1.25351 1.08315 0.98630 1.03088 1.20048 1.02971 1.01454 0.91254 1.19516 1.00988 0.94870 0.95466 1.20876 1.01166 0.98379 0.90854 1.21328 0.99957 0.79026 1.00133 1.58225 1.80163 1.14801 1.30383 1.05794 0.77652 0.73630 0.74064 1.93535 1.61011 1.63555 1.76960 1.93528 1.79453 1.45613 1.76674 1.30511 1.17528 1.10403 1.13609 1.18966 0.98501 0.94931 0.88691 1.20955 0.93958 1.37157 1.03976 0.92069 1.25070 0.96180 0.95362 0.97851 1.69947 1.22045 1.37564 1.23267 0.86522 0.82416 0.78451 0.79844 1.21068 1.20066 1.20064 0.91532 0.91207 0.90970 0.81916 0.84512 0.89640 0.89816 0.90858 0.88315 0.86188 0.86124 0.94862 0.94856 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.40 37.16 0.35 -1.35 16 2 C 0.22 2.78 3.32 -68.48 -0.23 2.55 16 3 H 0.12 1.59 6.89 -51.92 -0.36 1.24 16 4 C -0.18 -2.21 5.70 -35.36 -0.20 -2.41 16 5 S 0.11 1.09 23.32 -107.50 -2.51 -1.42 16 6 C -0.22 -2.01 11.20 28.89 0.32 -1.68 16 7 C -0.13 -1.24 9.99 -41.04 -0.41 -1.65 16 8 C -0.10 -1.11 5.80 -104.74 -0.61 -1.72 16 9 C -0.07 -0.76 6.32 -27.11 -0.17 -0.93 16 10 C 0.12 1.38 6.13 -3.73 -0.02 1.36 16 11 N -1.00 -13.94 2.86 -107.37 -0.31 -14.25 16 12 S 2.59 46.92 5.46 -107.50 -0.59 46.33 16 13 O -0.96 -19.66 16.75 -57.54 -0.96 -20.62 16 14 O -0.96 -20.10 16.62 -57.54 -0.96 -21.06 16 15 C -0.59 -11.06 6.12 37.16 0.23 -10.84 16 16 C 0.03 0.71 4.98 -27.89 -0.14 0.58 16 17 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 21 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H 0.07 0.63 7.46 -51.93 -0.39 0.25 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 28 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.68 7.45 -51.93 -0.39 0.29 16 33 H 0.10 1.12 7.10 -51.93 -0.37 0.75 16 34 H 0.12 2.02 7.88 -51.92 -0.41 1.61 16 35 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -34.09 338.36 -11.04 -45.13 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.24 Total: -0.46 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -1.29 Total: -29.15 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.43 Total: -39.89 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -1.92 Total: -41.68 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 48.01 SS G_CDS: -3.09 Total: 44.91 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.09 -11.04 -45.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882712221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.319 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds