Wall clock time and date at job start Tue Mar 31 2020 11:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86789 * 120.00330 * 2 1 4 4 H 1.48503 * 109.47613 * 270.00504 * 3 2 1 5 5 H 1.48507 * 109.46877 * 30.00355 * 3 2 1 6 6 H 1.48504 * 109.47509 * 150.00090 * 3 2 1 7 7 C 1.37885 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.53513 * 114.17013 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93318 * 220.32424 * 10 9 7 12 12 C 1.38548 * 110.99941 * 138.70208 * 11 10 9 13 13 C 1.39752 * 120.48466 * 180.02562 * 12 11 10 14 14 C 1.38175 * 118.49520 * 179.97438 * 13 12 11 15 15 N 1.32422 * 119.30008 * 0.02562 * 14 13 12 16 16 C 1.32562 * 120.93084 * 359.97438 * 15 14 13 17 17 C 1.48314 * 119.18189 * 179.97438 * 16 15 14 18 18 C 1.39402 * 120.12094 * 180.30052 * 17 16 15 19 19 C 1.37991 * 119.89799 * 180.30014 * 18 17 16 20 20 C 1.38323 * 120.14306 * 359.67560 * 19 18 17 21 21 C 1.38424 * 120.23666 * 0.02562 * 20 19 18 22 22 Cl 1.73604 * 119.94705 * 180.02562 * 21 20 19 23 23 C 1.38148 * 120.09769 * 359.97438 * 21 20 19 24 24 N 1.32596 * 121.63846 * 0.26151 * 16 15 14 25 25 C 1.47482 * 87.83533 * 27.01059 * 11 10 9 26 26 H 0.96993 * 119.99715 * 359.97438 * 1 2 3 27 27 H 1.09005 * 113.25725 * 312.94406 * 9 7 2 28 28 H 1.09001 * 113.47535 * 105.56056 * 10 9 7 29 29 H 1.08998 * 113.52775 * 335.10262 * 10 9 7 30 30 H 1.07996 * 120.75074 * 359.97178 * 13 12 11 31 31 H 1.07997 * 120.34971 * 179.97438 * 14 13 12 32 32 H 1.07997 * 120.04729 * 359.97167 * 18 17 16 33 33 H 1.08005 * 119.92920 * 179.69762 * 19 18 17 34 34 H 1.08003 * 119.88318 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.06703 * 180.02562 * 23 21 20 36 36 H 1.08998 * 113.47607 * 87.75362 * 25 11 10 37 37 H 1.08998 * 113.47772 * 218.22600 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6525 0.7002 6 1 3.5469 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.1496 -3.7438 -0.0028 11 7 1.2075 -4.3576 -0.9571 12 6 1.8849 -5.0433 -1.9523 13 6 1.1815 -5.7018 -2.9645 14 6 1.8986 -6.3725 -3.9367 15 7 3.2216 -6.3727 -3.8817 16 6 3.8633 -5.7395 -2.9098 17 6 5.3460 -5.7654 -2.8855 18 6 6.0405 -5.1114 -1.8690 19 6 7.4202 -5.1332 -1.8544 20 6 8.1147 -5.8080 -2.8421 21 6 7.4308 -6.4646 -3.8507 22 17 8.3101 -7.3097 -5.0862 23 6 6.0496 -6.4491 -3.8750 24 7 3.2124 -5.0882 -1.9557 25 6 0.8554 -2.9954 -1.3995 26 1 -0.4849 0.8400 0.0004 27 1 0.4447 -2.5312 0.7311 28 1 2.1863 -4.2537 0.9599 29 1 3.1393 -3.5656 -0.4234 30 1 0.1018 -5.6867 -2.9863 31 1 1.3854 -6.8918 -4.7325 32 1 5.4997 -4.5841 -1.0972 33 1 7.9589 -4.6226 -1.0698 34 1 9.1946 -5.8221 -2.8267 35 1 5.5165 -6.9618 -4.6619 36 1 1.4994 -2.6166 -2.1931 37 1 -0.2047 -2.8710 -1.6205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884555413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:04 Heat of formation + Delta-G solvation = 113.925149 kcal Electronic energy + Delta-G solvation = -22582.483578 eV Core-core repulsion = 19159.151228 eV Total energy + Delta-G solvation = -3423.332350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23559 -39.46324 -38.63373 -36.61053 -33.63315 -33.21408 -32.32419 -30.91834 -30.15443 -28.23145 -25.46575 -25.00767 -24.34900 -23.12726 -22.12820 -21.32577 -18.97058 -18.01704 -17.30299 -16.88586 -16.03770 -15.72996 -15.17461 -15.14376 -14.94868 -14.61557 -14.30309 -14.08899 -13.93847 -13.63828 -13.49671 -12.99742 -12.15808 -11.85883 -11.77698 -11.61822 -11.53775 -11.36020 -11.08863 -11.03679 -10.83612 -10.63891 -10.38008 -10.13312 -9.88821 -9.52494 -9.18534 -9.07063 -8.96786 -8.69910 -8.57276 -8.21421 -6.17103 -4.21942 0.38683 1.07520 1.25542 1.57800 1.93024 3.23385 3.30946 3.33914 3.38719 3.70381 4.01373 4.12979 4.30967 4.42872 4.72467 4.78707 5.09359 5.12344 5.16504 5.17354 5.25684 5.35152 5.51952 5.57329 5.72552 5.88374 6.00009 6.09790 6.18091 6.22439 6.29513 6.39547 6.56253 6.58389 6.63929 6.73504 6.82722 7.24737 7.57301 7.72148 7.84360 8.21331 8.22698 8.81994 9.44094 10.92442 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.003429 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.577610 B = 8163.653356 C = 9486.040265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.044 3.956 10 C 0.006 3.994 11 N -0.445 5.445 12 C 0.345 3.655 13 C -0.229 4.229 14 C 0.155 3.845 15 N -0.536 5.536 16 C 0.369 3.631 17 C -0.026 4.026 18 C -0.064 4.064 19 C -0.116 4.116 20 C -0.096 4.096 21 C -0.048 4.048 22 Cl -0.073 7.073 23 C -0.065 4.065 24 N -0.536 5.536 25 C 0.025 3.975 26 H 0.263 0.737 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.061 0.939 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.736 -12.715 -7.396 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.025 3.975 10 C -0.122 4.122 11 N -0.165 5.165 12 C 0.105 3.895 13 C -0.254 4.254 14 C -0.009 4.009 15 N -0.252 5.252 16 C 0.102 3.898 17 C -0.029 4.029 18 C -0.084 4.084 19 C -0.134 4.134 20 C -0.115 4.115 21 C -0.074 4.074 22 Cl -0.044 7.044 23 C -0.085 4.085 24 N -0.255 5.255 25 C -0.101 4.101 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.166 0.834 31 H 0.186 0.814 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.079 0.921 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.018 -13.147 -7.255 18.625 hybrid contribution -0.078 1.142 -0.571 1.279 sum 10.940 -12.005 -7.827 18.030 Atomic orbital electron populations 1.69954 1.06037 1.27037 1.49208 1.25035 0.94862 0.99351 0.94325 0.86573 0.79996 0.83135 0.78234 1.20604 1.21062 1.19637 1.20984 0.92940 0.89811 1.51643 0.92034 1.20174 0.94488 0.91443 0.91417 1.24101 0.97209 0.96168 0.94681 1.66420 1.26820 1.15202 1.08025 1.21115 0.87490 0.90778 0.90124 1.22510 1.02994 1.02564 0.97317 1.22945 0.89110 0.92825 0.96000 1.68252 1.10424 1.21395 1.25154 1.20905 0.93594 0.89029 0.86266 1.17969 0.88163 1.00284 0.96444 1.21549 0.94027 0.95662 0.97164 1.21114 0.93881 0.99593 0.98852 1.21203 1.00583 0.96449 0.93250 1.20746 0.92137 1.01017 0.93517 1.98364 1.75929 1.76638 1.53452 1.21145 0.91544 0.97375 0.98467 1.68398 1.09499 1.20536 1.27028 1.24271 1.01045 0.81768 1.02978 0.92687 0.91261 0.91506 0.89323 0.83411 0.81447 0.83589 0.84383 0.84795 0.83561 0.92053 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 13.26 55.43 0.74 -23.71 16 2 C 0.07 1.79 5.46 -17.81 -0.10 1.70 16 3 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.52 -13.43 8.82 -34.44 -0.30 -13.73 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.04 1.05 3.77 -91.24 -0.34 0.70 16 10 C 0.01 0.12 6.96 -7.54 -0.05 0.07 16 11 N -0.45 -8.83 6.43 -182.50 -1.17 -10.01 16 12 C 0.34 6.28 5.86 -154.87 -0.91 5.37 16 13 C -0.23 -3.45 10.10 -39.04 -0.39 -3.85 16 14 C 0.15 2.06 11.28 -17.32 -0.20 1.87 16 15 N -0.54 -8.18 9.44 -11.23 -0.11 -8.29 16 16 C 0.37 6.07 7.56 -156.97 -1.19 4.88 16 17 C -0.03 -0.38 5.88 -104.91 -0.62 -0.99 16 18 C -0.06 -0.84 9.56 -39.24 -0.38 -1.22 16 19 C -0.12 -1.22 10.03 -39.64 -0.40 -1.62 16 20 C -0.10 -0.96 9.82 -39.48 -0.39 -1.35 16 21 C -0.05 -0.54 6.31 -39.55 -0.25 -0.79 16 22 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 23 C -0.06 -0.83 9.34 -39.21 -0.37 -1.20 16 24 N -0.54 -9.68 7.37 -10.37 -0.08 -9.76 16 25 C 0.03 0.54 7.22 -7.54 -0.05 0.49 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.07 1.78 8.11 -51.93 -0.42 1.36 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.09 1.86 6.65 -51.93 -0.35 1.51 16 30 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.15 2.03 7.51 -52.49 -0.39 1.64 16 33 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.15 1.83 7.51 -52.49 -0.39 1.44 16 36 H 0.06 1.39 7.85 -51.93 -0.41 0.98 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -28.21 336.55 -12.04 -40.25 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.04 Total: 2.95 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -5.93 Total: -9.65 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.62 Total: -51.76 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.21 -12.04 -40.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884555413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.175 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds