Wall clock time and date at job start Tue Mar 31 2020 11:04:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81396 * 1
3 3 C 1.81393 * 103.00021 * 2 1
4 4 C 1.53002 * 109.47243 * 180.02562 * 3 2 1
5 5 N 1.46500 * 109.47122 * 179.97438 * 4 3 2
6 6 S 1.65599 * 119.99879 * 164.99639 * 5 4 3
7 7 O 1.42101 * 106.40542 * 311.46159 * 6 5 4
8 8 O 1.42098 * 106.40229 * 178.53922 * 6 5 4
9 9 C 1.76203 * 107.21703 * 65.00041 * 6 5 4
10 10 C 1.38233 * 120.00082 * 90.00045 * 9 6 5
11 11 C 1.38237 * 120.00111 * 179.97438 * 10 9 6
12 12 C 1.38231 * 119.99929 * 0.02562 * 11 10 9
13 13 C 1.50703 * 119.99766 * 179.97438 * 12 11 10
14 14 C 1.50701 * 109.47151 * 90.00279 * 13 12 11
15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12
16 16 C 1.37871 * 119.99694 * 180.27762 * 14 13 12
17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13
18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13
19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14
20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14
21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14
22 22 C 1.38233 * 120.00119 * 0.25187 * 12 11 10
23 23 C 1.38232 * 119.99735 * 359.49690 * 22 12 11
24 24 H 1.08999 * 109.47412 * 60.00518 * 1 2 3
25 25 H 1.09004 * 109.47068 * 180.02562 * 1 2 3
26 26 H 1.08998 * 109.47229 * 299.99982 * 1 2 3
27 27 H 1.09004 * 109.47075 * 59.99973 * 3 2 1
28 28 H 1.09003 * 109.47167 * 299.99771 * 3 2 1
29 29 H 1.08995 * 109.47527 * 59.99406 * 4 3 2
30 30 H 1.09003 * 109.46770 * 299.99913 * 4 3 2
31 31 H 0.96990 * 120.00143 * 345.00111 * 5 4 3
32 32 H 1.08000 * 120.00181 * 359.97438 * 10 9 6
33 33 H 1.08003 * 119.99517 * 179.97438 * 11 10 9
34 34 H 1.09000 * 109.47088 * 329.99418 * 13 12 11
35 35 H 1.09007 * 109.46560 * 209.99923 * 13 12 11
36 36 H 0.96995 * 120.00207 * 179.97438 * 17 16 14
37 37 H 1.08002 * 120.00409 * 179.72430 * 22 12 11
38 38 H 1.08008 * 119.99912 * 180.25278 * 23 22 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2220 1.7674 0.0000
4 6 3.7423 1.9399 -0.0006
5 7 4.0718 3.3674 -0.0013
6 16 5.6080 3.8626 0.3692
7 8 5.9719 3.1829 1.5629
8 8 5.6131 5.2785 0.2488
9 6 6.6721 3.2519 -0.8953
10 6 6.9178 4.0160 -2.0208
11 6 7.7531 3.5370 -3.0127
12 6 8.3423 2.2937 -2.8793
13 6 9.2525 1.7714 -3.9609
14 6 10.6698 2.1947 -3.6726
15 1 10.8894 2.7835 -2.7942
16 6 11.6851 1.8356 -4.5335
17 7 11.4176 1.1189 -5.6033
18 14 13.4407 2.3669 -4.1803
19 1 13.4751 3.1592 -2.9248
20 1 14.3011 1.1657 -4.0318
21 1 13.9418 3.1987 -5.3038
22 6 8.0922 1.5271 -1.7565
23 6 7.2610 2.0083 -0.7623
24 1 -0.3634 0.5137 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3633 0.5138 0.8900
27 1 1.8031 2.2371 0.8900
28 1 1.8031 2.2371 -0.8900
29 1 4.1609 1.4703 -0.8907
30 1 4.1616 1.4702 0.8892
31 1 3.3903 4.0223 -0.2186
32 1 6.4571 4.9872 -2.1252
33 1 7.9446 4.1340 -3.8921
34 1 8.9413 2.1755 -4.9242
35 1 9.1968 0.6831 -3.9883
36 1 12.1318 0.8666 -6.2091
37 1 8.5490 0.5538 -1.6544
38 1 7.0688 1.4110 0.1168
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000884887438.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:04:57
Heat of formation + Delta-G solvation = -64.294056 kcal
Electronic energy + Delta-G solvation = -21112.786890 eV
Core-core repulsion = 17786.921282 eV
Total energy + Delta-G solvation = -3325.865608 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 315.075 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-38.81455 -37.22862 -36.20735 -35.80480 -33.68378 -31.56711 -30.58738 -30.32840
-29.26858 -27.44066 -23.74949 -23.45534 -22.33125 -20.92019 -19.59109 -17.98818
-17.38876 -16.59302 -16.45571 -16.27903 -15.65811 -15.27329 -15.05224 -14.40448
-14.37183 -14.19525 -13.92522 -13.78485 -13.13971 -13.04086 -12.87074 -12.82521
-12.46891 -12.23526 -12.05116 -11.96420 -11.71585 -11.65719 -11.49295 -10.95694
-10.93230 -10.53544 -10.49580 -10.42952 -9.86580 -9.70438 -9.59838 -8.60005
-8.54453 -8.39594 -8.08088 -6.17439 -4.22400 0.39870 1.22273 1.31441
1.78703 2.13699 3.07126 3.23211 3.31309 3.36608 3.71416 4.10117
4.23259 4.37418 4.43663 4.52320 4.70448 4.72882 4.96431 5.12637
5.17879 5.22785 5.24353 5.27924 5.36491 5.59756 5.71657 5.81450
5.90470 6.23938 6.31980 6.49200 6.69334 6.83100 6.90303 7.28888
7.42471 7.58537 7.77879 8.12903 8.82690 9.42716 10.92656
Molecular weight = 315.07amu
Principal moments of inertia in cm(-1)
A = 0.017617 B = 0.002986 C = 0.002689
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1589.015192 B = 9374.379746 C =10409.301845
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 S -0.244 6.244
3 C -0.098 4.098
4 C 0.133 3.867
5 N -1.119 6.119
6 S 2.700 3.300
7 O -0.962 6.962
8 O -0.964 6.964
9 C -0.705 4.705
10 C -0.022 4.022
11 C -0.146 4.146
12 C 0.028 3.972
13 C 0.039 3.961
14 C -0.517 4.517
15 H 0.059 0.941
16 C 0.060 3.940
17 N -0.891 5.891
18 Si 0.898 3.102
19 H -0.271 1.271
20 H -0.282 1.282
21 H -0.282 1.282
22 C -0.145 4.145
23 C -0.024 4.024
24 H 0.078 0.922
25 H 0.103 0.897
26 H 0.077 0.923
27 H 0.090 0.910
28 H 0.090 0.910
29 H 0.079 0.921
30 H 0.091 0.909
31 H 0.416 0.584
32 H 0.130 0.870
33 H 0.129 0.871
34 H 0.035 0.965
35 H 0.035 0.965
36 H 0.264 0.736
37 H 0.129 0.871
38 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.663 0.739 9.706 23.749
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.291 4.291
2 S -0.020 6.020
3 C -0.247 4.247
4 C 0.005 3.995
5 N -0.878 5.878
6 S 2.793 3.207
7 O -0.952 6.952
8 O -0.954 6.954
9 C -0.795 4.795
10 C -0.041 4.041
11 C -0.165 4.165
12 C 0.027 3.973
13 C 0.002 3.998
14 C -0.555 4.555
15 H 0.078 0.922
16 C -0.142 4.142
17 N -0.530 5.530
18 Si 0.726 3.274
19 H -0.196 1.196
20 H -0.208 1.208
21 H -0.208 1.208
22 C -0.164 4.164
23 C -0.044 4.044
24 H 0.097 0.903
25 H 0.122 0.878
26 H 0.096 0.904
27 H 0.109 0.891
28 H 0.108 0.892
29 H 0.098 0.902
30 H 0.109 0.891
31 H 0.250 0.750
32 H 0.147 0.853
33 H 0.147 0.853
34 H 0.053 0.947
35 H 0.053 0.947
36 H 0.073 0.927
37 H 0.147 0.853
38 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -20.543 0.146 10.344 23.001
hybrid contribution 0.055 1.176 -0.759 1.401
sum -20.488 1.323 9.585 22.658
Atomic orbital electron populations
1.23406 0.93902 1.06778 1.05021 1.87083 1.07475 1.09346 1.98089
1.23561 0.99473 0.95807 1.05905 1.20932 0.93635 0.80878 1.04010
1.55627 1.29411 1.13812 1.88986 1.01521 0.72179 0.73012 0.74021
1.93565 1.82328 1.75810 1.43483 1.93572 1.86116 1.28494 1.87245
1.30267 1.23316 1.07502 1.18367 1.20765 0.94877 0.97312 0.91164
1.21249 0.98638 0.96796 0.99806 1.21127 0.89006 0.91991 0.95138
1.18552 0.92657 0.97259 0.91345 1.21005 0.90672 1.34492 1.09293
0.92231 1.25004 0.99417 0.94875 0.94874 1.69953 1.32994 1.37132
1.12894 0.86427 0.84039 0.78517 0.78459 1.19566 1.20780 1.20811
1.21253 0.99643 1.01234 0.94228 1.20799 0.93444 0.92595 0.97554
0.90345 0.87816 0.90386 0.89104 0.89151 0.90232 0.89073 0.74990
0.85258 0.85333 0.94701 0.94660 0.92675 0.85268 0.85200
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.62 10.76 101.05 1.09 0.46 16
2 S -0.24 -2.02 22.38 -107.50 -2.41 -4.42 16
3 C -0.10 -0.68 6.08 37.16 0.23 -0.45 16
4 C 0.13 1.17 6.23 -4.04 -0.03 1.14 16
5 N -1.12 -10.26 6.00 -10.61 -0.06 -10.32 16
6 S 2.70 35.92 5.74 -107.50 -0.62 35.30 16
7 O -0.96 -15.14 16.75 -57.17 -0.96 -16.10 16
8 O -0.96 -15.00 17.28 -57.17 -0.99 -15.98 16
9 C -0.70 -10.86 5.95 -39.58 -0.24 -11.10 16
10 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16
11 C -0.15 -2.69 9.70 -39.58 -0.38 -3.08 16
12 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16
13 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16
14 C -0.52 -14.00 9.09 -34.44 -0.31 -14.31 16
15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16
16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16
17 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16
18 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16
19 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16
20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16
21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
22 C -0.14 -2.66 9.70 -39.59 -0.38 -3.05 16
23 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16
24 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16
25 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16
26 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16
27 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16
28 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16
29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16
30 H 0.09 0.85 7.75 -51.93 -0.40 0.45 16
31 H 0.42 2.76 8.65 -34.47 -0.30 2.47 16
32 H 0.13 1.78 7.62 -52.49 -0.40 1.38 16
33 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16
34 H 0.03 0.88 8.09 -51.93 -0.42 0.47 16
35 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16
36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
37 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16
38 H 0.13 1.78 7.62 -52.48 -0.40 1.38 16
LS Contribution 353.31 15.07 5.32 5.32
Total: -1.00 -33.18 353.31 -10.81 -43.99
By element:
Atomic # 1 Polarization: 5.62 SS G_CDS: -5.26 Total: 0.36 kcal
Atomic # 6 Polarization: -27.91 SS G_CDS: -1.56 Total: -29.47 kcal
Atomic # 7 Polarization: -35.79 SS G_CDS: 0.67 Total: -35.11 kcal
Atomic # 8 Polarization: -30.14 SS G_CDS: -1.95 Total: -32.09 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Atomic # 16 Polarization: 33.90 SS G_CDS: -3.02 Total: 30.88 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -33.18 -10.81 -43.99 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000884887438.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.304 kcal
(2) G-P(sol) polarization free energy of solvation -33.175 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.480 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.294 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds