Wall clock time and date at job start Tue Mar 31 2020 11:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81393 * 103.00021 * 2 1 4 4 C 1.53002 * 109.47243 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47122 * 179.97438 * 4 3 2 6 6 S 1.65599 * 119.99879 * 164.99639 * 5 4 3 7 7 O 1.42101 * 106.40542 * 311.46159 * 6 5 4 8 8 O 1.42098 * 106.40229 * 178.53922 * 6 5 4 9 9 C 1.76203 * 107.21703 * 65.00041 * 6 5 4 10 10 C 1.38233 * 120.00082 * 90.00045 * 9 6 5 11 11 C 1.38237 * 120.00111 * 179.97438 * 10 9 6 12 12 C 1.38231 * 119.99929 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99766 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47151 * 90.00279 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27762 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.38233 * 120.00119 * 0.25187 * 12 11 10 23 23 C 1.38232 * 119.99735 * 359.49690 * 22 12 11 24 24 H 1.08999 * 109.47412 * 60.00518 * 1 2 3 25 25 H 1.09004 * 109.47068 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47229 * 299.99982 * 1 2 3 27 27 H 1.09004 * 109.47075 * 59.99973 * 3 2 1 28 28 H 1.09003 * 109.47167 * 299.99771 * 3 2 1 29 29 H 1.08995 * 109.47527 * 59.99406 * 4 3 2 30 30 H 1.09003 * 109.46770 * 299.99913 * 4 3 2 31 31 H 0.96990 * 120.00143 * 345.00111 * 5 4 3 32 32 H 1.08000 * 120.00181 * 359.97438 * 10 9 6 33 33 H 1.08003 * 119.99517 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.47088 * 329.99418 * 13 12 11 35 35 H 1.09007 * 109.46560 * 209.99923 * 13 12 11 36 36 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.00409 * 179.72430 * 22 12 11 38 38 H 1.08008 * 119.99912 * 180.25278 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7423 1.9399 -0.0006 5 7 4.0718 3.3674 -0.0013 6 16 5.6080 3.8626 0.3692 7 8 5.9719 3.1829 1.5629 8 8 5.6131 5.2785 0.2488 9 6 6.6721 3.2519 -0.8953 10 6 6.9178 4.0160 -2.0208 11 6 7.7531 3.5370 -3.0127 12 6 8.3423 2.2937 -2.8793 13 6 9.2525 1.7714 -3.9609 14 6 10.6698 2.1947 -3.6726 15 1 10.8894 2.7835 -2.7942 16 6 11.6851 1.8356 -4.5335 17 7 11.4176 1.1189 -5.6033 18 14 13.4407 2.3669 -4.1803 19 1 13.4751 3.1592 -2.9248 20 1 14.3011 1.1657 -4.0318 21 1 13.9418 3.1987 -5.3038 22 6 8.0922 1.5271 -1.7565 23 6 7.2610 2.0083 -0.7623 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8031 2.2371 0.8900 28 1 1.8031 2.2371 -0.8900 29 1 4.1609 1.4703 -0.8907 30 1 4.1616 1.4702 0.8892 31 1 3.3903 4.0223 -0.2186 32 1 6.4571 4.9872 -2.1252 33 1 7.9446 4.1340 -3.8921 34 1 8.9413 2.1755 -4.9242 35 1 9.1968 0.6831 -3.9883 36 1 12.1318 0.8666 -6.2091 37 1 8.5490 0.5538 -1.6544 38 1 7.0688 1.4110 0.1168 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884887438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:57 Heat of formation + Delta-G solvation = -64.294056 kcal Electronic energy + Delta-G solvation = -21112.786890 eV Core-core repulsion = 17786.921282 eV Total energy + Delta-G solvation = -3325.865608 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.81455 -37.22862 -36.20735 -35.80480 -33.68378 -31.56711 -30.58738 -30.32840 -29.26858 -27.44066 -23.74949 -23.45534 -22.33125 -20.92019 -19.59109 -17.98818 -17.38876 -16.59302 -16.45571 -16.27903 -15.65811 -15.27329 -15.05224 -14.40448 -14.37183 -14.19525 -13.92522 -13.78485 -13.13971 -13.04086 -12.87074 -12.82521 -12.46891 -12.23526 -12.05116 -11.96420 -11.71585 -11.65719 -11.49295 -10.95694 -10.93230 -10.53544 -10.49580 -10.42952 -9.86580 -9.70438 -9.59838 -8.60005 -8.54453 -8.39594 -8.08088 -6.17439 -4.22400 0.39870 1.22273 1.31441 1.78703 2.13699 3.07126 3.23211 3.31309 3.36608 3.71416 4.10117 4.23259 4.37418 4.43663 4.52320 4.70448 4.72882 4.96431 5.12637 5.17879 5.22785 5.24353 5.27924 5.36491 5.59756 5.71657 5.81450 5.90470 6.23938 6.31980 6.49200 6.69334 6.83100 6.90303 7.28888 7.42471 7.58537 7.77879 8.12903 8.82690 9.42716 10.92656 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.002986 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.015192 B = 9374.379746 C =10409.301845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.244 6.244 3 C -0.098 4.098 4 C 0.133 3.867 5 N -1.119 6.119 6 S 2.700 3.300 7 O -0.962 6.962 8 O -0.964 6.964 9 C -0.705 4.705 10 C -0.022 4.022 11 C -0.146 4.146 12 C 0.028 3.972 13 C 0.039 3.961 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.145 4.145 23 C -0.024 4.024 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.416 0.584 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.129 0.871 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.663 0.739 9.706 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.020 6.020 3 C -0.247 4.247 4 C 0.005 3.995 5 N -0.878 5.878 6 S 2.793 3.207 7 O -0.952 6.952 8 O -0.954 6.954 9 C -0.795 4.795 10 C -0.041 4.041 11 C -0.165 4.165 12 C 0.027 3.973 13 C 0.002 3.998 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.164 4.164 23 C -0.044 4.044 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.250 0.750 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.543 0.146 10.344 23.001 hybrid contribution 0.055 1.176 -0.759 1.401 sum -20.488 1.323 9.585 22.658 Atomic orbital electron populations 1.23406 0.93902 1.06778 1.05021 1.87083 1.07475 1.09346 1.98089 1.23561 0.99473 0.95807 1.05905 1.20932 0.93635 0.80878 1.04010 1.55627 1.29411 1.13812 1.88986 1.01521 0.72179 0.73012 0.74021 1.93565 1.82328 1.75810 1.43483 1.93572 1.86116 1.28494 1.87245 1.30267 1.23316 1.07502 1.18367 1.20765 0.94877 0.97312 0.91164 1.21249 0.98638 0.96796 0.99806 1.21127 0.89006 0.91991 0.95138 1.18552 0.92657 0.97259 0.91345 1.21005 0.90672 1.34492 1.09293 0.92231 1.25004 0.99417 0.94875 0.94874 1.69953 1.32994 1.37132 1.12894 0.86427 0.84039 0.78517 0.78459 1.19566 1.20780 1.20811 1.21253 0.99643 1.01234 0.94228 1.20799 0.93444 0.92595 0.97554 0.90345 0.87816 0.90386 0.89104 0.89151 0.90232 0.89073 0.74990 0.85258 0.85333 0.94701 0.94660 0.92675 0.85268 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.76 101.05 1.09 0.46 16 2 S -0.24 -2.02 22.38 -107.50 -2.41 -4.42 16 3 C -0.10 -0.68 6.08 37.16 0.23 -0.45 16 4 C 0.13 1.17 6.23 -4.04 -0.03 1.14 16 5 N -1.12 -10.26 6.00 -10.61 -0.06 -10.32 16 6 S 2.70 35.92 5.74 -107.50 -0.62 35.30 16 7 O -0.96 -15.14 16.75 -57.17 -0.96 -16.10 16 8 O -0.96 -15.00 17.28 -57.17 -0.99 -15.98 16 9 C -0.70 -10.86 5.95 -39.58 -0.24 -11.10 16 10 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 11 C -0.15 -2.69 9.70 -39.58 -0.38 -3.08 16 12 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 13 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 14 C -0.52 -14.00 9.09 -34.44 -0.31 -14.31 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 18 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.14 -2.66 9.70 -39.59 -0.38 -3.05 16 23 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 24 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 25 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.85 7.75 -51.93 -0.40 0.45 16 31 H 0.42 2.76 8.65 -34.47 -0.30 2.47 16 32 H 0.13 1.78 7.62 -52.49 -0.40 1.38 16 33 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 34 H 0.03 0.88 8.09 -51.93 -0.42 0.47 16 35 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.13 1.78 7.62 -52.48 -0.40 1.38 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -33.18 353.31 -10.81 -43.99 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.26 Total: 0.36 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -1.56 Total: -29.47 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.67 Total: -35.11 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.95 Total: -32.09 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 33.90 SS G_CDS: -3.02 Total: 30.88 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.18 -10.81 -43.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884887438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.304 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds