Wall clock time and date at job start Tue Mar 31 2020 11:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36015 * 116.99921 * 2 1 4 4 C 1.38538 * 120.05343 * 0.02562 * 3 2 1 5 5 C 1.38333 * 120.02622 * 179.97438 * 4 3 2 6 6 Cl 1.73597 * 119.93551 * 179.97438 * 5 4 3 7 7 C 1.38579 * 120.12772 * 359.97438 * 5 4 3 8 8 F 1.35105 * 119.94188 * 179.97438 * 7 5 4 9 9 C 1.38357 * 120.10386 * 359.97438 * 7 5 4 10 10 C 1.38726 * 119.97293 * 359.77073 * 9 7 5 11 11 N 1.40168 * 120.06449 * 180.22839 * 10 9 7 12 12 C 1.34781 * 119.99994 * 24.80568 * 11 10 9 13 13 O 1.21302 * 119.99652 * 5.53721 * 12 11 10 14 14 C 1.50694 * 120.00169 * 185.53145 * 12 11 10 15 15 C 1.53000 * 109.47345 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47512 * 180.02562 * 15 14 12 17 17 C 1.50695 * 109.47370 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00156 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99893 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99880 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00148 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47107 * 90.00101 * 21 19 17 23 23 H 1.48501 * 109.46901 * 209.99904 * 21 19 17 24 24 H 1.48501 * 109.46863 * 329.99770 * 21 19 17 25 25 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47154 * 59.99365 * 1 2 3 27 27 H 1.08999 * 109.47138 * 299.99791 * 1 2 3 28 28 H 1.07996 * 119.98226 * 359.96650 * 4 3 2 29 29 H 1.08003 * 120.01002 * 179.97438 * 9 7 5 30 30 H 0.96992 * 119.99784 * 204.80821 * 11 10 9 31 31 H 1.09006 * 109.46905 * 300.00154 * 14 12 11 32 32 H 1.08998 * 109.46865 * 60.00074 * 14 12 11 33 33 H 1.09002 * 109.46625 * 300.00140 * 15 14 12 34 34 H 1.09001 * 109.46856 * 59.99922 * 15 14 12 35 35 H 1.08999 * 109.46686 * 300.00214 * 16 15 14 36 36 H 1.09004 * 109.47114 * 59.99260 * 16 15 14 37 37 H 0.96999 * 120.00367 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2930 2.3745 0.0005 5 6 1.9216 3.6068 0.0011 6 17 0.9752 5.0620 0.0011 7 6 3.3054 3.6817 0.0016 8 9 3.9154 4.8872 0.0016 9 6 4.0631 2.5241 0.0021 10 6 3.4371 1.2861 0.0070 11 7 4.2029 0.1121 0.0123 12 6 5.4582 0.1285 0.5028 13 8 5.8900 1.1317 1.0305 14 6 6.3252 -1.0994 0.3955 15 6 7.6906 -0.8162 1.0251 16 6 8.5711 -2.0627 0.9157 17 6 9.9157 -1.7840 1.5364 18 1 10.1219 -0.8146 1.9656 19 6 10.8828 -2.7665 1.5563 20 7 12.0564 -2.5231 2.0975 21 14 10.5260 -4.4434 0.8146 22 1 10.9099 -4.4420 -0.6199 23 1 11.3080 -5.4799 1.5353 24 1 9.0765 -4.7413 0.9389 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 0.2145 2.3186 0.0004 29 1 5.1414 2.5843 0.0021 30 1 3.8294 -0.7121 -0.3369 31 1 5.8484 -1.9277 0.9198 32 1 6.4561 -1.3611 -0.6544 33 1 8.1674 0.0122 0.5012 34 1 7.5593 -0.5547 2.0751 35 1 8.0943 -2.8913 1.4393 36 1 8.7022 -2.3239 -0.1344 37 1 12.7369 -3.2142 2.1113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888626992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:21 Heat of formation + Delta-G solvation = -105.557036 kcal Electronic energy + Delta-G solvation = -22990.734972 eV Core-core repulsion = 19094.823185 eV Total energy + Delta-G solvation = -3895.911787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.08855 -41.16891 -39.65545 -37.80225 -36.75951 -34.88018 -34.40102 -32.18667 -30.69276 -30.03469 -28.37415 -27.55815 -24.48098 -23.19351 -22.58650 -20.70746 -19.99711 -18.98662 -18.17382 -17.69166 -16.79151 -16.58562 -16.36721 -16.17921 -15.77272 -15.65267 -15.33586 -14.60977 -14.35367 -13.97497 -13.75147 -13.65513 -13.32749 -13.22617 -12.68165 -12.64604 -12.42296 -12.09272 -11.90420 -11.76574 -11.38534 -11.31134 -11.05019 -10.82633 -10.46320 -10.08499 -9.91330 -9.74986 -9.57302 -9.17672 -9.02813 -8.53224 -8.13103 -6.02639 -4.00878 0.52008 0.71214 1.63644 2.45222 2.60644 2.80666 3.13301 3.29928 3.37306 3.39459 3.81904 4.18602 4.43746 4.45043 4.59035 4.68222 4.70509 4.96016 5.01261 5.19368 5.23825 5.30343 5.39367 5.45513 5.50894 5.57357 5.94615 6.01650 6.29127 6.47980 6.60347 6.76592 6.86122 7.16375 7.32043 7.40341 7.79667 8.01151 8.56364 9.03891 9.59035 11.11001 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.022865 B = 0.002564 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.298932 B =10918.049048 C =12023.015289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.095 3.905 4 C -0.153 4.153 5 C -0.062 4.062 6 Cl -0.050 7.050 7 C 0.103 3.897 8 F -0.123 7.123 9 C -0.127 4.127 10 C 0.170 3.830 11 N -0.668 5.668 12 C 0.513 3.487 13 O -0.510 6.510 14 C -0.139 4.139 15 C -0.089 4.089 16 C -0.014 4.014 17 C -0.520 4.520 18 H 0.073 0.927 19 C 0.065 3.935 20 N -0.903 5.903 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.151 0.849 29 H 0.177 0.823 30 H 0.419 0.581 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.016 0.984 36 H 0.012 0.988 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.961 7.315 -7.634 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.047 3.953 4 C -0.173 4.173 5 C -0.091 4.091 6 Cl -0.021 7.021 7 C 0.082 3.918 8 F -0.101 7.101 9 C -0.148 4.148 10 C 0.073 3.927 11 N -0.313 5.313 12 C 0.303 3.697 13 O -0.383 6.383 14 C -0.179 4.179 15 C -0.127 4.127 16 C -0.051 4.051 17 C -0.558 4.558 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.543 5.543 21 Si 0.709 3.291 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.190 1.190 25 H 0.123 0.877 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.168 0.832 29 H 0.194 0.806 30 H 0.256 0.744 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.034 0.966 36 H 0.030 0.970 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -28.365 7.864 -7.207 30.304 hybrid contribution -0.588 -0.839 -0.517 1.148 sum -28.953 7.024 -7.724 30.778 Atomic orbital electron populations 1.23144 0.77554 1.04535 1.01656 1.86060 1.21995 1.25274 1.89047 1.18441 0.90082 0.84984 1.01778 1.20698 1.00754 0.89159 1.06677 1.20589 0.90052 0.89020 1.09393 1.98382 1.71659 1.35151 1.96952 1.17038 0.88300 0.81493 1.04943 1.91554 1.83052 1.41719 1.93794 1.21271 1.03089 0.88313 1.02135 1.16875 0.86776 0.87454 1.01631 1.43732 1.14797 1.10687 1.62108 1.21556 0.80654 0.91464 0.76026 1.90680 1.72280 1.34467 1.40908 1.21924 0.97531 0.94319 1.04123 1.21312 0.90575 1.00285 1.00537 1.19600 0.95714 0.93403 0.96428 1.21145 0.95868 1.00846 1.37960 0.90902 1.25055 0.94921 0.98672 0.94988 1.69918 1.04787 1.34192 1.45356 0.86760 0.78718 0.84251 0.79408 1.20339 1.21444 1.19032 0.87689 0.92318 0.92281 0.83160 0.80598 0.74378 0.88733 0.88625 0.91874 0.91846 0.96588 0.97012 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.46 9.91 -19.79 -0.20 -2.65 16 3 C 0.10 0.90 6.70 -39.09 -0.26 0.64 16 4 C -0.15 -1.31 8.81 -39.44 -0.35 -1.66 16 5 C -0.06 -0.64 6.32 -39.42 -0.25 -0.89 16 6 Cl -0.05 -0.48 28.60 -51.86 -1.48 -1.97 16 7 C 0.10 1.26 7.27 -39.41 -0.29 0.98 16 8 F -0.12 -1.62 16.83 2.25 0.04 -1.59 16 9 C -0.13 -1.63 8.69 -39.36 -0.34 -1.97 16 10 C 0.17 1.95 6.45 -83.48 -0.54 1.42 16 11 N -0.67 -7.31 5.29 -9.74 -0.05 -7.37 16 12 C 0.51 7.20 7.64 -10.99 -0.08 7.11 16 13 O -0.51 -8.97 13.15 5.54 0.07 -8.90 16 14 C -0.14 -1.94 5.70 -27.89 -0.16 -2.09 16 15 C -0.09 -1.73 4.44 -26.73 -0.12 -1.85 16 16 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 17 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 18 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 19 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 20 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 21 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 25 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 27 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 28 H 0.15 0.88 6.29 -52.49 -0.33 0.55 16 29 H 0.18 2.56 5.79 -52.48 -0.30 2.25 16 30 H 0.42 3.41 8.34 -40.82 -0.34 3.07 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 35 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 36 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -33.45 334.41 -6.65 -40.10 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.23 Total: -1.00 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.94 Total: -11.09 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.72 Total: -34.66 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.12 Total: -11.55 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.45 -6.65 -40.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888626992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.461 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds