Wall clock time and date at job start Tue Mar 31 2020 11:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99678 * 2 1 4 4 H 1.48498 * 109.47064 * 239.99595 * 3 2 1 5 5 H 1.48495 * 109.47470 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46852 * 120.00231 * 3 2 1 7 7 C 1.37875 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00242 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99541 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.43625 * 57.45935 * 9 7 2 11 11 C 1.54887 * 110.48835 * 294.77334 * 9 7 2 12 12 C 1.54893 * 102.74961 * 203.37837 * 11 9 7 13 13 C 1.54267 * 104.19220 * 37.94464 * 12 11 9 14 14 H 1.09005 * 110.07208 * 217.08198 * 13 12 11 15 15 N 1.46501 * 110.03066 * 95.67311 * 13 12 11 16 16 C 1.34780 * 119.99832 * 87.83548 * 15 13 12 17 17 O 1.21638 * 120.00360 * 359.97438 * 16 15 13 18 18 C 1.47187 * 119.99703 * 180.02562 * 16 15 13 19 19 C 1.36009 * 123.46290 * 359.97201 * 18 16 15 20 20 S 1.70456 * 110.81771 * 179.75062 * 19 18 16 21 21 C 1.75504 * 92.44386 * 0.35780 * 20 19 18 22 22 C 1.32774 * 110.57350 * 359.63902 * 21 20 19 23 23 C 1.50706 * 123.45591 * 180.26996 * 22 21 20 24 24 F 1.39898 * 109.47461 * 119.97324 * 23 22 21 25 25 F 1.39895 * 109.46728 * 239.97587 * 23 22 21 26 26 C 1.53868 * 106.60028 * 336.38965 * 13 12 11 27 27 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 28 28 H 1.08994 * 110.76039 * 321.69599 * 11 9 7 29 29 H 1.09004 * 110.75260 * 84.88649 * 11 9 7 30 30 H 1.08998 * 110.49148 * 279.26613 * 12 11 9 31 31 H 1.09002 * 110.48307 * 156.61913 * 12 11 9 32 32 H 0.97000 * 120.00063 * 267.82649 * 15 13 12 33 33 H 1.08001 * 124.59331 * 0.02562 * 19 18 16 34 34 H 1.08002 * 124.71459 * 179.91101 * 21 20 19 35 35 H 1.09003 * 109.47018 * 359.97259 * 23 22 21 36 36 H 1.09003 * 110.03568 * 119.28588 * 26 13 12 37 37 H 1.09002 * 110.03043 * 240.71722 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5846 -2.5538 -0.8613 11 6 0.4540 -2.6649 1.3171 12 6 0.2760 -4.2002 1.4181 13 6 1.6127 -4.7708 0.9008 14 1 1.4340 -5.6793 0.3255 15 7 2.5052 -5.0574 2.0266 16 6 2.4505 -6.2554 2.6418 17 8 1.6598 -7.0984 2.2626 18 6 3.3468 -6.5431 3.7733 19 6 4.2559 -5.6535 4.2550 20 16 5.1151 -6.3170 5.5691 21 6 4.2426 -7.8365 5.4696 22 6 3.3517 -7.7994 4.4858 23 6 2.4392 -8.9500 4.1475 24 9 1.1071 -8.5435 4.2801 25 9 2.6730 -9.3588 2.8302 26 6 2.2326 -3.6892 -0.0012 27 1 -0.4850 0.8401 0.0004 28 1 1.0251 -2.2857 2.1644 29 1 -0.5122 -2.1648 1.2496 30 1 -0.5494 -4.5309 0.7876 31 1 0.1094 -4.4976 2.4534 32 1 3.1355 -4.3851 2.3292 33 1 4.4092 -4.6596 3.8613 34 1 4.4046 -8.6826 6.1210 35 1 2.6348 -9.7805 4.8258 36 1 3.1976 -3.3776 0.3987 37 1 2.3540 -4.0725 -1.0143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891288731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:20 Heat of formation + Delta-G solvation = -116.284690 kcal Electronic energy + Delta-G solvation = -24065.206732 eV Core-core repulsion = 20183.246254 eV Total energy + Delta-G solvation = -3881.960477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.71252 -46.72460 -39.86254 -37.73664 -36.60498 -33.64246 -32.13739 -30.70920 -28.16504 -27.36959 -26.61833 -24.49535 -23.72993 -21.50389 -19.65744 -19.41677 -18.87694 -18.23574 -17.53527 -17.00190 -16.66716 -16.48016 -15.85840 -15.29847 -14.81486 -14.56327 -14.08912 -13.82221 -13.51596 -13.40681 -13.32806 -13.07508 -12.94984 -12.75438 -12.53106 -12.32348 -11.72000 -11.68714 -11.02212 -10.99200 -10.98334 -10.84088 -10.58991 -10.41028 -9.94862 -9.61073 -9.55926 -9.48294 -9.21993 -8.84882 -8.81195 -8.52463 -8.35982 -6.02217 -4.05682 0.44884 1.10794 1.48149 1.52705 3.29096 3.35012 3.36150 3.42566 3.48253 3.77900 4.17534 4.31706 4.41698 4.70849 4.92752 5.05965 5.10482 5.29170 5.29859 5.56378 5.65103 5.67769 5.77710 5.84914 6.33330 6.35386 6.62526 6.65806 6.76672 6.92580 6.94070 7.25916 7.34979 7.69153 7.83308 7.85874 8.01654 8.41696 8.50036 8.96679 9.58298 11.07173 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.003479 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.051746 B = 8045.347055 C = 9018.506500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.048 3.952 10 H 0.034 0.966 11 C -0.099 4.099 12 C -0.136 4.136 13 C 0.142 3.858 14 H 0.078 0.922 15 N -0.706 5.706 16 C 0.563 3.437 17 O -0.521 6.521 18 C -0.123 4.123 19 C -0.214 4.214 20 S 0.214 5.786 21 C -0.204 4.204 22 C -0.140 4.140 23 C 0.345 3.655 24 F -0.188 7.188 25 F -0.189 7.189 26 C -0.122 4.122 27 H 0.260 0.740 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.396 0.604 33 H 0.178 0.822 34 H 0.177 0.823 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.219 -15.519 13.184 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.052 0.948 11 C -0.137 4.137 12 C -0.174 4.174 13 C 0.038 3.962 14 H 0.097 0.903 15 N -0.357 5.357 16 C 0.347 3.653 17 O -0.398 6.398 18 C -0.139 4.139 19 C -0.352 4.352 20 S 0.481 5.519 21 C -0.340 4.340 22 C -0.154 4.154 23 C 0.289 3.711 24 F -0.169 7.169 25 F -0.170 7.170 26 C -0.160 4.160 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.231 0.769 33 H 0.195 0.805 34 H 0.194 0.806 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.609 -15.424 13.797 23.255 hybrid contribution -0.395 0.958 -0.828 1.326 sum 10.213 -14.466 12.969 21.949 Atomic orbital electron populations 1.69949 1.05876 1.26575 1.50191 1.24977 0.94814 0.98963 0.95094 0.86720 0.79636 0.83458 0.78510 1.20325 1.21342 1.20399 1.21124 0.92567 0.90524 1.51191 0.92814 1.19467 0.92472 0.91033 0.94099 0.94824 1.22450 1.01334 0.90522 0.99415 1.22841 0.95810 0.99132 0.99650 1.21806 0.89802 0.98530 0.86044 0.90341 1.46124 1.40272 1.14892 1.34446 1.17530 0.82945 0.82830 0.82031 1.90846 1.38171 1.46150 1.64674 1.20211 1.00133 0.93516 1.00080 1.25752 1.01574 1.05000 1.02873 1.83080 1.36611 1.04328 1.27872 1.25377 1.01765 1.03616 1.03242 1.20481 1.00412 0.96245 0.98230 1.19736 0.77572 0.92243 0.81592 1.93048 1.36005 1.92115 1.95692 1.93038 1.94170 1.90869 1.38890 1.22615 1.00299 0.95941 0.97185 0.92989 0.93616 0.91457 0.91924 0.93097 0.76897 0.80459 0.80578 0.87188 0.92141 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 12.29 55.43 0.68 -24.49 16 2 C 0.06 1.72 5.35 -17.82 -0.10 1.63 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -13.66 8.46 -34.44 -0.29 -13.95 16 8 H 0.05 1.39 7.54 -52.49 -0.40 0.99 16 9 C 0.05 1.15 2.72 -90.11 -0.25 0.91 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 11 C -0.10 -2.27 5.75 -24.74 -0.14 -2.41 16 12 C -0.14 -2.71 6.54 -25.07 -0.16 -2.87 16 13 C 0.14 2.64 3.25 -66.81 -0.22 2.42 16 14 H 0.08 1.51 7.56 -51.93 -0.39 1.12 16 15 N -0.71 -11.55 5.00 -53.87 -0.27 -11.82 16 16 C 0.56 9.54 7.78 -12.63 -0.10 9.44 16 17 O -0.52 -10.49 12.63 5.24 0.07 -10.43 16 18 C -0.12 -1.65 5.98 -104.63 -0.63 -2.28 16 19 C -0.21 -2.20 10.38 29.93 0.31 -1.89 16 20 S 0.21 1.57 23.02 -107.50 -2.48 -0.90 16 21 C -0.20 -1.61 10.86 28.86 0.31 -1.30 16 22 C -0.14 -1.63 5.44 -104.06 -0.57 -2.20 16 23 C 0.34 4.20 4.97 36.01 0.18 4.37 16 24 F -0.19 -2.92 15.81 2.25 0.04 -2.88 16 25 F -0.19 -2.87 15.80 2.25 0.04 -2.84 16 26 C -0.12 -2.43 6.13 -25.62 -0.16 -2.58 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.05 1.06 8.05 -51.93 -0.42 0.64 16 29 H 0.07 1.69 7.55 -51.93 -0.39 1.30 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 32 H 0.40 5.64 6.82 -40.82 -0.28 5.36 16 33 H 0.18 1.54 7.01 -52.49 -0.37 1.18 16 34 H 0.18 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.11 0.78 8.04 -51.93 -0.42 0.36 16 36 H 0.06 1.15 7.13 -51.93 -0.37 0.78 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -32.34 327.55 -8.09 -40.43 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.28 Total: 2.91 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -1.80 Total: -10.70 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.41 Total: -36.32 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.07 Total: -5.72 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.48 Total: -0.90 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.34 -8.09 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891288731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.856 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds