Wall clock time and date at job start Tue Mar 31 2020 11:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99678 * 2 1 4 4 H 1.48498 * 109.47064 * 239.99595 * 3 2 1 5 5 H 1.48495 * 109.47470 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46852 * 120.00231 * 3 2 1 7 7 C 1.37875 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00242 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99541 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.43625 * 57.45935 * 9 7 2 11 11 C 1.54887 * 110.48835 * 294.77334 * 9 7 2 12 12 C 1.54893 * 102.74961 * 203.37837 * 11 9 7 13 13 C 1.54267 * 104.19220 * 37.94464 * 12 11 9 14 14 H 1.09005 * 110.07208 * 217.08198 * 13 12 11 15 15 N 1.46501 * 110.03066 * 95.67311 * 13 12 11 16 16 C 1.34780 * 119.99832 * 87.83548 * 15 13 12 17 17 O 1.21638 * 120.00360 * 359.97438 * 16 15 13 18 18 C 1.47187 * 119.99703 * 180.02562 * 16 15 13 19 19 C 1.36009 * 123.46290 * 359.97201 * 18 16 15 20 20 S 1.70456 * 110.81771 * 179.75062 * 19 18 16 21 21 C 1.75504 * 92.44386 * 0.35780 * 20 19 18 22 22 C 1.32774 * 110.57350 * 359.63902 * 21 20 19 23 23 C 1.50706 * 123.45591 * 180.26996 * 22 21 20 24 24 F 1.39898 * 109.47461 * 119.97324 * 23 22 21 25 25 F 1.39895 * 109.46728 * 239.97587 * 23 22 21 26 26 C 1.53868 * 106.60028 * 336.38965 * 13 12 11 27 27 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 28 28 H 1.08994 * 110.76039 * 321.69599 * 11 9 7 29 29 H 1.09004 * 110.75260 * 84.88649 * 11 9 7 30 30 H 1.08998 * 110.49148 * 279.26613 * 12 11 9 31 31 H 1.09002 * 110.48307 * 156.61913 * 12 11 9 32 32 H 0.97000 * 120.00063 * 267.82649 * 15 13 12 33 33 H 1.08001 * 124.59331 * 0.02562 * 19 18 16 34 34 H 1.08002 * 124.71459 * 179.91101 * 21 20 19 35 35 H 1.09003 * 109.47018 * 359.97259 * 23 22 21 36 36 H 1.09003 * 110.03568 * 119.28588 * 26 13 12 37 37 H 1.09002 * 110.03043 * 240.71722 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5846 -2.5538 -0.8613 11 6 0.4540 -2.6649 1.3171 12 6 0.2760 -4.2002 1.4181 13 6 1.6127 -4.7708 0.9008 14 1 1.4340 -5.6793 0.3255 15 7 2.5052 -5.0574 2.0266 16 6 2.4505 -6.2554 2.6418 17 8 1.6598 -7.0984 2.2626 18 6 3.3468 -6.5431 3.7733 19 6 4.2559 -5.6535 4.2550 20 16 5.1151 -6.3170 5.5691 21 6 4.2426 -7.8365 5.4696 22 6 3.3517 -7.7994 4.4858 23 6 2.4392 -8.9500 4.1475 24 9 1.1071 -8.5435 4.2801 25 9 2.6730 -9.3588 2.8302 26 6 2.2326 -3.6892 -0.0012 27 1 -0.4850 0.8401 0.0004 28 1 1.0251 -2.2857 2.1644 29 1 -0.5122 -2.1648 1.2496 30 1 -0.5494 -4.5309 0.7876 31 1 0.1094 -4.4976 2.4534 32 1 3.1355 -4.3851 2.3292 33 1 4.4092 -4.6596 3.8613 34 1 4.4046 -8.6826 6.1210 35 1 2.6348 -9.7805 4.8258 36 1 3.1976 -3.3776 0.3987 37 1 2.3540 -4.0725 -1.0143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891288731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:20 Heat of formation + Delta-G solvation = -136.166701 kcal Electronic energy + Delta-G solvation = -24066.068880 eV Core-core repulsion = 20183.246254 eV Total energy + Delta-G solvation = -3882.822626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.69217 -47.74278 -41.11659 -39.03453 -37.85451 -35.27997 -33.88063 -31.68798 -29.98269 -28.86919 -27.59400 -25.93985 -25.16830 -22.61055 -21.26533 -20.94103 -20.07318 -19.15568 -18.51037 -18.45454 -17.99072 -17.59194 -16.92599 -16.65629 -16.56965 -16.08809 -15.62082 -15.13753 -14.61398 -14.57157 -14.19081 -14.13978 -14.10923 -13.97543 -13.79734 -13.55524 -13.46858 -12.94912 -12.76487 -12.54037 -12.46524 -12.39591 -12.18512 -11.78741 -11.68347 -11.47379 -11.09700 -10.90297 -10.82001 -10.44587 -10.20925 -10.00938 -9.43652 -8.09441 -6.19679 -0.29917 0.48076 0.65950 0.77502 1.44007 1.45092 1.52512 2.20691 2.29432 2.45676 3.06554 3.21641 3.44622 3.55123 3.81763 3.98801 4.02344 4.08417 4.18441 4.20227 4.38135 4.50561 4.66776 4.72663 4.88065 4.91561 4.97271 5.02484 5.08036 5.16083 5.22467 5.41178 5.65289 5.66853 5.88906 5.98662 6.37604 6.57776 6.91180 7.24802 7.48072 8.99418 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.003479 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.051746 B = 8045.347055 C = 9018.506500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.040 3.960 10 H 0.000 1.000 11 C -0.086 4.086 12 C -0.125 4.125 13 C 0.154 3.846 14 H 0.073 0.927 15 N -0.703 5.703 16 C 0.558 3.442 17 O -0.563 6.563 18 C -0.163 4.163 19 C -0.219 4.219 20 S 0.296 5.704 21 C -0.185 4.185 22 C -0.174 4.174 23 C 0.328 3.672 24 F -0.215 7.215 25 F -0.214 7.214 26 C -0.109 4.109 27 H 0.259 0.741 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.407 0.593 33 H 0.188 0.812 34 H 0.219 0.781 35 H 0.165 0.835 36 H 0.072 0.928 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.286 -15.935 15.518 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.079 0.921 9 C 0.021 3.979 10 H 0.018 0.982 11 C -0.125 4.125 12 C -0.164 4.164 13 C 0.049 3.951 14 H 0.091 0.909 15 N -0.354 5.354 16 C 0.345 3.655 17 O -0.443 6.443 18 C -0.180 4.180 19 C -0.358 4.358 20 S 0.564 5.436 21 C -0.321 4.321 22 C -0.186 4.186 23 C 0.273 3.727 24 F -0.196 7.196 25 F -0.195 7.195 26 C -0.147 4.147 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.244 0.756 33 H 0.205 0.795 34 H 0.235 0.765 35 H 0.182 0.818 36 H 0.091 0.909 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.713 -15.839 16.148 26.451 hybrid contribution -1.269 1.090 -1.471 2.228 sum 12.444 -14.748 14.677 24.244 Atomic orbital electron populations 1.70099 1.07422 1.27198 1.51365 1.25783 0.95562 1.02499 0.94897 0.85682 0.78339 0.79100 0.78946 1.19680 1.21570 1.19229 1.21517 0.93072 0.91535 1.50521 0.92145 1.19439 0.92966 0.92311 0.93184 0.98159 1.22207 0.99379 0.92208 0.98663 1.22719 0.96898 0.96945 0.99814 1.21458 0.89350 0.97637 0.86653 0.90890 1.45968 1.40094 1.15490 1.33889 1.18132 0.82859 0.82002 0.82529 1.90814 1.40085 1.47240 1.66125 1.20046 1.01676 0.95788 1.00526 1.26054 1.00840 1.05153 1.03713 1.82902 1.33794 1.02532 1.24419 1.25897 0.99444 1.05151 1.01642 1.20472 1.02383 0.95677 1.00098 1.20537 0.76415 0.94495 0.81247 1.92980 1.38292 1.92604 1.95732 1.92974 1.94217 1.91182 1.41123 1.22426 0.99625 0.94473 0.98181 0.93222 0.94089 0.94490 0.92126 0.92936 0.75618 0.79473 0.76465 0.81793 0.90905 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 12.29 21.45 0.26 -53.31 16 2 C 0.01 0.62 5.35 84.65 0.45 1.07 16 3 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.53 -28.10 8.46 25.60 0.22 -27.88 16 8 H 0.06 3.06 7.54 -2.91 -0.02 3.04 16 9 C 0.04 1.96 2.72 -10.47 -0.03 1.93 16 10 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 11 C -0.09 -4.08 5.75 31.89 0.18 -3.90 16 12 C -0.13 -5.13 6.54 31.67 0.21 -4.93 16 13 C 0.15 5.79 3.25 45.71 0.15 5.94 16 14 H 0.07 2.87 7.56 -2.38 -0.02 2.85 16 15 N -0.70 -22.89 5.00 -442.58 -2.21 -25.10 16 16 C 0.56 19.10 7.78 86.59 0.67 19.77 16 17 O -0.56 -23.40 12.63 -4.15 -0.05 -23.45 16 18 C -0.16 -4.21 5.98 -19.87 -0.12 -4.33 16 19 C -0.22 -3.96 10.38 67.30 0.70 -3.26 16 20 S 0.30 3.05 23.02 -56.49 -1.30 1.75 16 21 C -0.19 -2.14 10.86 66.64 0.72 -1.42 16 22 C -0.17 -3.70 5.44 -19.46 -0.11 -3.81 16 23 C 0.33 7.67 4.97 71.24 0.35 8.02 16 24 F -0.21 -6.79 15.81 44.97 0.71 -6.07 16 25 F -0.21 -6.59 15.80 44.97 0.71 -5.88 16 26 C -0.11 -4.32 6.13 31.32 0.19 -4.13 16 27 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.04 1.93 8.05 -2.39 -0.02 1.92 16 29 H 0.04 1.94 7.55 -2.38 -0.02 1.92 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.05 2.12 8.04 -2.39 -0.02 2.10 16 32 H 0.41 11.23 6.82 -92.71 -0.63 10.60 16 33 H 0.19 2.80 7.01 -2.91 -0.02 2.78 16 34 H 0.22 0.54 8.06 -2.91 -0.02 0.51 16 35 H 0.17 1.85 8.04 -2.39 -0.02 1.83 16 36 H 0.07 2.70 7.13 -2.39 -0.02 2.68 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -73.89 327.55 4.23 -69.67 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.48 Total: 14.68 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 3.60 Total: -16.92 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -1.95 Total: -78.41 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.45 kcal Atomic # 9 Polarization: -13.38 SS G_CDS: 1.42 Total: -11.96 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.30 Total: 1.75 kcal Total: -73.89 4.23 -69.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891288731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.499 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds