Wall clock time and date at job start Tue Mar 31 2020 11:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00339 * 2 1 4 4 H 1.48500 * 109.47081 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47215 * 120.00069 * 3 2 1 6 6 H 1.48504 * 109.47314 * 240.00085 * 3 2 1 7 7 C 1.39944 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99965 * 154.93072 * 7 2 1 9 9 C 1.41429 * 120.00067 * 334.92869 * 7 2 1 10 10 C 1.40783 * 120.17841 * 334.66916 * 9 7 2 11 11 C 1.37712 * 120.04454 * 179.69171 * 10 9 7 12 12 C 1.38379 * 120.40630 * 0.61001 * 11 10 9 13 13 C 1.39877 * 120.35760 * 359.67485 * 12 11 10 14 14 C 1.47886 * 120.02509 * 180.02562 * 13 12 11 15 15 O 1.21553 * 119.99812 * 24.31602 * 14 13 12 16 16 N 1.34773 * 120.00249 * 204.32808 * 14 13 12 17 17 C 1.47979 * 126.93572 * 5.70198 * 16 14 13 18 18 C 1.55121 * 102.65537 * 158.72605 * 17 16 14 19 19 O 1.44641 * 102.24939 * 36.40722 * 18 17 16 20 20 C 1.43733 * 105.57570 * 322.29086 * 19 18 17 21 21 H 1.08997 * 109.71891 * 265.41393 * 20 19 18 22 22 C 1.53001 * 109.71254 * 144.86330 * 20 19 18 23 23 F 1.39901 * 109.47026 * 61.15669 * 22 20 19 24 24 F 1.39901 * 109.47182 * 181.15311 * 22 20 19 25 25 F 1.39898 * 109.47395 * 301.15763 * 22 20 19 26 26 C 1.39031 * 119.95254 * 0.02562 * 13 12 11 27 27 H 0.96996 * 120.00215 * 174.83540 * 1 2 3 28 28 H 1.08004 * 119.97987 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.80164 * 180.30024 * 11 10 9 30 30 H 1.07997 * 119.81766 * 179.68852 * 12 11 10 31 31 H 1.08997 * 110.75327 * 277.12076 * 17 16 14 32 32 H 1.09000 * 110.75554 * 40.49166 * 17 16 14 33 33 H 1.09004 * 111.02678 * 278.16353 * 18 17 16 34 34 H 1.09006 * 110.73324 * 154.52252 * 18 17 16 35 35 H 1.07995 * 120.20352 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7464 0.0006 5 1 3.0961 1.6963 1.2125 6 1 3.0960 1.6963 -1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0116 -1.2559 -0.3969 9 6 1.4006 -2.3793 0.5179 10 6 0.3801 -2.2775 1.4824 11 6 -0.2137 -3.4157 1.9807 12 6 0.1948 -4.6653 1.5487 13 6 1.2113 -4.7864 0.5955 14 6 1.6416 -6.1254 0.1386 15 8 0.8791 -7.0687 0.2178 16 7 2.8793 -6.2999 -0.3654 17 6 3.9651 -5.2962 -0.4244 18 6 5.2347 -6.1767 -0.5623 19 8 4.7682 -7.2588 -1.4011 20 6 3.4219 -7.5253 -0.9740 21 1 3.4216 -8.3315 -0.2405 22 6 2.5678 -7.9249 -2.1789 23 9 3.0878 -9.0898 -2.7534 24 9 1.2529 -8.1577 -1.7618 25 9 2.5818 -6.8929 -3.1233 26 6 1.8167 -3.6469 0.0778 27 1 -0.4850 -0.8366 -0.0756 28 1 0.0589 -1.3059 1.8278 29 1 -0.9995 -3.3329 2.7169 30 1 -0.2740 -5.5518 1.9496 31 1 3.8455 -4.6486 -1.2929 32 1 3.9998 -4.7102 0.4940 33 1 5.5583 -6.5512 0.4089 34 1 6.0362 -5.6241 -1.0525 35 1 2.6022 -3.7356 -0.6580 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912083138.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:40 Heat of formation + Delta-G solvation = -209.842318 kcal Electronic energy + Delta-G solvation = -27045.428054 eV Core-core repulsion = 22593.197437 eV Total energy + Delta-G solvation = -4452.230617 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.24785 -48.78661 -48.74929 -41.90689 -40.07184 -38.99511 -35.82509 -35.43970 -32.38477 -31.64034 -31.41434 -28.61088 -27.08771 -25.49381 -24.37977 -23.52900 -22.75093 -21.46792 -19.94202 -19.79800 -19.63623 -19.07198 -18.30252 -17.55729 -17.13135 -16.65222 -16.21636 -16.03773 -15.82915 -15.64900 -15.60309 -15.54534 -15.41264 -15.18048 -14.99072 -14.89892 -14.76995 -14.31457 -14.23168 -13.90662 -13.70530 -13.48813 -13.05770 -12.74275 -12.60480 -12.36915 -12.14163 -11.93923 -11.42600 -11.27233 -11.20333 -10.86194 -10.30562 -9.73640 -9.64117 -9.17440 -6.49066 0.13380 0.83310 1.14884 1.37928 1.55733 1.59762 1.80471 1.84356 2.08943 2.36084 2.54808 2.68326 2.89512 3.25423 3.37026 3.44372 3.46732 3.78606 3.93101 4.00203 4.25452 4.45267 4.56647 4.63452 4.69251 4.73924 4.85544 5.00931 5.08716 5.27271 5.61035 5.64548 5.72691 5.79953 6.01289 6.11108 6.21659 6.66305 6.77731 6.89418 8.04569 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.018555 B = 0.004257 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.636548 B = 6576.161023 C = 7253.712243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.004 3.996 3 Si 1.116 2.884 4 H -0.279 1.279 5 H -0.260 1.260 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.212 4.212 11 C -0.091 4.091 12 C -0.196 4.196 13 C -0.107 4.107 14 C 0.590 3.410 15 O -0.544 6.544 16 N -0.635 5.635 17 C 0.059 3.941 18 C 0.045 3.955 19 O -0.350 6.350 20 C 0.271 3.729 21 H 0.141 0.859 22 C 0.433 3.567 23 F -0.172 7.172 24 F -0.171 7.171 25 F -0.184 7.184 26 C -0.194 4.194 27 H 0.283 0.717 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.153 0.847 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.771 -8.162 -0.665 14.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.212 4.212 3 Si 0.933 3.067 4 H -0.204 1.204 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.573 4.573 8 H 0.104 0.896 9 C 0.062 3.938 10 C -0.232 4.232 11 C -0.109 4.109 12 C -0.216 4.216 13 C -0.110 4.110 14 C 0.382 3.618 15 O -0.422 6.422 16 N -0.376 5.376 17 C -0.062 4.062 18 C -0.030 4.030 19 O -0.266 6.266 20 C 0.125 3.875 21 H 0.158 0.842 22 C 0.377 3.623 23 F -0.153 7.153 24 F -0.152 7.152 25 F -0.166 7.166 26 C -0.214 4.214 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.171 0.829 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.134 -7.156 -0.744 13.256 hybrid contribution -0.722 -1.721 -0.262 1.885 sum 10.412 -8.877 -1.007 13.719 Atomic orbital electron populations 1.70595 1.09202 1.33253 1.31212 1.28404 0.95562 1.07594 0.89688 0.83011 0.74736 0.69691 0.79276 1.20391 1.18465 1.18033 1.20782 1.03539 0.94522 1.38449 0.89608 1.17922 0.91816 0.93387 0.90694 1.21398 1.03253 0.97372 1.01154 1.20838 0.98864 0.91985 0.99209 1.20595 1.00992 0.96985 1.03005 1.19385 0.99961 0.90705 1.00921 1.18403 0.78877 0.88947 0.75551 1.90771 1.52774 1.43021 1.55613 1.49109 1.14037 1.13672 1.60744 1.23791 0.84934 0.92248 1.05250 1.24534 0.96035 0.85142 0.97246 1.89226 1.21686 1.55714 1.59971 1.23454 0.82634 0.91670 0.89699 0.84217 1.21285 0.80185 0.75270 0.85513 1.93192 1.86417 1.49490 1.86202 1.93324 1.37690 1.94386 1.89798 1.93178 1.96474 1.59147 1.67800 1.21665 1.04936 0.91022 1.03771 0.90426 0.88589 0.85903 0.87049 0.89246 0.86925 0.87455 0.82910 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.98 12.32 21.83 0.27 -41.71 16 2 C 0.00 0.18 4.95 85.26 0.42 0.60 16 3 Si 1.12 39.37 30.00 68.60 2.06 41.43 16 4 H -0.28 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 6 H -0.26 -8.20 7.11 99.48 0.71 -7.49 16 7 C -0.55 -26.17 8.99 23.47 0.21 -25.96 16 8 H 0.09 3.84 7.96 -2.91 -0.02 3.82 16 9 C 0.06 3.11 5.30 -21.32 -0.11 2.99 16 10 C -0.21 -10.15 7.92 22.77 0.18 -9.97 16 11 C -0.09 -3.92 10.01 22.18 0.22 -3.70 16 12 C -0.20 -8.41 9.59 22.70 0.22 -8.19 16 13 C -0.11 -4.51 5.72 -20.14 -0.12 -4.62 16 14 C 0.59 22.75 7.28 86.80 0.63 23.39 16 15 O -0.54 -23.37 14.26 -3.88 -0.06 -23.42 16 16 N -0.63 -19.15 3.05 -906.70 -2.77 -21.91 16 17 C 0.06 1.36 5.28 86.82 0.46 1.82 16 18 C 0.05 0.68 7.90 72.71 0.57 1.25 16 19 O -0.35 -7.54 11.19 -148.98 -1.67 -9.21 16 20 C 0.27 7.07 3.46 86.25 0.30 7.37 16 21 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 22 C 0.43 13.23 2.95 71.98 0.21 13.44 16 23 F -0.17 -4.78 17.28 44.97 0.78 -4.00 16 24 F -0.17 -6.18 14.09 44.97 0.63 -5.55 16 25 F -0.18 -6.07 17.18 44.97 0.77 -5.30 16 26 C -0.19 -8.34 7.99 23.01 0.18 -8.15 16 27 H 0.28 15.20 6.61 -92.71 -0.61 14.59 16 28 H 0.10 4.81 6.44 -2.91 -0.02 4.79 16 29 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.11 4.56 7.83 -2.91 -0.02 4.54 16 31 H 0.09 2.17 6.78 -2.39 -0.02 2.15 16 32 H 0.11 2.61 7.21 -2.39 -0.02 2.59 16 33 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.15 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.13 4.91 4.61 -2.91 -0.01 4.90 16 Total: -1.00 -61.17 307.94 4.72 -56.45 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.32 Total: 22.94 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 3.38 Total: -9.72 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -2.50 Total: -63.63 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.72 Total: -32.63 kcal Atomic # 9 Polarization: -17.02 SS G_CDS: 2.18 Total: -14.84 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.06 Total: 41.43 kcal Total: -61.17 4.72 -56.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912083138.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.392 kcal (2) G-P(sol) polarization free energy of solvation -61.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds