Wall clock time and date at job start Tue Mar 31 2020 11:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 119.99837 * 2 1 4 4 H 1.48495 * 109.47262 * 239.99710 * 3 2 1 5 5 H 1.48495 * 109.47507 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46816 * 119.99904 * 3 2 1 7 7 C 1.39937 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99934 * 168.63922 * 7 2 1 9 9 C 1.41443 * 120.00160 * 348.63277 * 7 2 1 10 10 C 1.40783 * 120.17477 * 336.28312 * 9 7 2 11 11 C 1.37712 * 120.03855 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.41040 * 359.96353 * 11 10 9 13 13 C 1.39876 * 120.36095 * 0.02562 * 12 11 10 14 14 C 1.47883 * 120.02793 * 180.02562 * 13 12 11 15 15 O 1.21544 * 119.99894 * 350.30147 * 14 13 12 16 16 N 1.34773 * 120.00250 * 170.30610 * 14 13 12 17 17 C 1.47981 * 126.93719 * 353.82098 * 16 14 13 18 18 C 1.54925 * 102.75220 * 201.27897 * 17 16 14 19 19 O 1.44636 * 102.34612 * 323.88148 * 18 17 16 20 20 C 1.43733 * 105.58034 * 37.53945 * 19 18 17 21 21 H 1.08993 * 109.71613 * 94.57974 * 20 19 18 22 22 C 1.53004 * 109.71252 * 215.13240 * 20 19 18 23 23 F 1.39897 * 109.47133 * 58.54356 * 22 20 19 24 24 F 1.39893 * 109.46967 * 178.54447 * 22 20 19 25 25 F 1.39902 * 109.46891 * 298.54438 * 22 20 19 26 26 C 1.39040 * 119.94643 * 0.27420 * 13 12 11 27 27 H 0.97002 * 120.00337 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.98265 * 0.02654 * 10 9 7 29 29 H 1.07999 * 119.79841 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.81999 * 180.02562 * 12 11 10 31 31 H 1.08997 * 110.75328 * 82.96408 * 17 16 14 32 32 H 1.09005 * 110.75466 * 319.59307 * 17 16 14 33 33 H 1.09002 * 110.82758 * 205.66685 * 18 17 16 34 34 H 1.09007 * 110.82977 * 82.09498 * 18 17 16 35 35 H 1.07998 * 120.20238 * 179.70304 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2773 2.7465 -0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0721 -1.2210 -0.1848 9 6 1.3215 -2.4249 0.2403 10 6 0.1062 -2.4212 0.9509 11 6 -0.5595 -3.6040 1.1843 12 6 -0.0420 -4.8017 0.7235 13 6 1.1642 -4.8250 0.0156 14 6 1.7103 -6.1092 -0.4739 15 8 1.2117 -7.1579 -0.1149 16 7 2.7609 -6.1168 -1.3180 17 6 3.4023 -4.9424 -1.9500 18 6 4.1223 -5.5631 -3.1734 19 8 4.5600 -6.8419 -2.6586 20 6 3.5013 -7.2947 -1.7984 21 1 2.8302 -7.9492 -2.3544 22 6 4.0920 -8.0535 -0.6083 23 9 4.9678 -7.2159 0.0906 24 9 3.0598 -8.4631 0.2425 25 9 4.7886 -9.1755 -1.0701 26 6 1.8519 -3.6404 -0.2231 27 1 -0.4851 0.8400 -0.0004 28 1 -0.3044 -1.4903 1.3131 29 1 -1.4914 -3.5967 1.7301 30 1 -0.5722 -5.7236 0.9116 31 1 4.1207 -4.4828 -1.2713 32 1 2.6528 -4.2182 -2.2694 33 1 4.9748 -4.9531 -3.4720 34 1 3.4295 -5.6964 -4.0044 35 1 2.7859 -3.6542 -0.7651 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912083139.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:42 Heat of formation + Delta-G solvation = -194.249197 kcal Electronic energy + Delta-G solvation = -27012.469867 eV Core-core repulsion = 22560.915419 eV Total energy + Delta-G solvation = -4451.554448 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.20555 -48.74408 -48.70465 -41.87848 -39.94289 -38.77975 -35.62392 -35.38846 -32.40471 -31.75482 -31.28965 -28.59109 -27.23615 -25.44619 -24.44875 -23.40836 -22.48996 -21.38078 -19.87722 -19.63215 -19.47704 -18.83123 -18.07836 -17.41856 -17.26954 -16.78158 -16.36601 -16.01314 -15.81889 -15.63484 -15.57770 -15.47610 -15.13396 -14.98041 -14.89407 -14.85450 -14.71300 -14.30728 -14.18751 -13.73435 -13.48125 -13.37959 -12.96146 -12.84055 -12.62364 -12.33966 -12.19492 -11.98792 -11.43707 -11.16926 -11.06821 -10.98035 -10.24645 -9.51754 -9.41251 -8.57766 -6.37401 0.27017 0.93285 1.19238 1.44972 1.45494 1.53553 1.56092 1.94376 2.13050 2.23773 2.59735 2.78845 2.94263 3.29979 3.46700 3.48986 3.68264 3.83074 3.99687 4.08020 4.39140 4.57284 4.60800 4.67120 4.77875 4.96128 5.03017 5.12475 5.15601 5.33631 5.49955 5.75096 5.96178 6.02576 6.11700 6.21328 6.62341 6.86000 6.91661 6.95624 8.34916 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.019302 B = 0.004253 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.278965 B = 6582.385597 C = 7459.180609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.483 4.483 8 H 0.088 0.912 9 C 0.069 3.931 10 C -0.161 4.161 11 C -0.117 4.117 12 C -0.184 4.184 13 C -0.125 4.125 14 C 0.590 3.410 15 O -0.548 6.548 16 N -0.635 5.635 17 C 0.053 3.947 18 C 0.044 3.956 19 O -0.349 6.349 20 C 0.270 3.730 21 H 0.138 0.862 22 C 0.435 3.565 23 F -0.183 7.183 24 F -0.170 7.170 25 F -0.172 7.172 26 C -0.206 4.206 27 H 0.288 0.712 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.154 0.846 34 H 0.104 0.896 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.985 -5.558 -7.225 12.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.512 4.512 8 H 0.106 0.894 9 C 0.067 3.933 10 C -0.181 4.181 11 C -0.135 4.135 12 C -0.204 4.204 13 C -0.128 4.128 14 C 0.383 3.617 15 O -0.426 6.426 16 N -0.376 5.376 17 C -0.068 4.068 18 C -0.031 4.031 19 O -0.266 6.266 20 C 0.125 3.875 21 H 0.155 0.845 22 C 0.379 3.621 23 F -0.165 7.165 24 F -0.152 7.152 25 F -0.154 7.154 26 C -0.225 4.225 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.136 0.864 33 H 0.172 0.828 34 H 0.122 0.878 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.665 -6.089 -7.028 12.051 hybrid contribution -0.135 0.571 0.622 0.855 sum 7.530 -5.518 -6.406 11.322 Atomic orbital electron populations 1.69806 1.08926 1.30494 1.36190 1.26732 0.95499 1.04493 0.91307 0.85219 0.78616 0.75648 0.80114 1.17859 1.19928 1.18842 1.19840 0.96621 0.90920 1.43806 0.89412 1.17957 0.92534 0.93154 0.89649 1.21872 0.98187 0.97366 1.00675 1.20927 0.99621 0.92444 1.00555 1.20649 0.97201 0.97349 1.05225 1.19330 0.97917 0.91338 1.04171 1.18418 0.77385 0.89693 0.76202 1.90749 1.59528 1.34220 1.58148 1.49078 1.31932 1.08322 1.48266 1.23910 0.98632 0.88961 0.95265 1.24524 1.02141 0.81480 0.94988 1.89217 1.38394 1.38408 1.60553 1.23432 0.87064 0.89526 0.87503 0.84526 1.21236 0.76573 0.78643 0.85652 1.93174 1.70623 1.71404 1.81250 1.93323 1.58226 1.90864 1.72738 1.93190 1.80004 1.53679 1.88505 1.22317 1.03014 0.91184 1.05987 0.90144 0.86206 0.86558 0.87585 0.88588 0.86447 0.82809 0.87768 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -39.58 10.54 21.82 0.23 -39.35 16 2 C 0.03 1.54 5.28 85.25 0.45 1.99 16 3 Si 0.98 34.32 29.57 68.60 2.03 36.35 16 4 H -0.25 -8.41 7.11 99.48 0.71 -7.71 16 5 H -0.27 -9.34 7.11 99.48 0.71 -8.64 16 6 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 7 C -0.48 -22.77 9.08 23.47 0.21 -22.56 16 8 H 0.09 3.83 7.87 -2.91 -0.02 3.80 16 9 C 0.07 3.36 5.60 -21.32 -0.12 3.24 16 10 C -0.16 -7.94 8.71 22.77 0.20 -7.74 16 11 C -0.12 -5.29 10.01 22.18 0.22 -5.07 16 12 C -0.18 -8.25 9.60 22.70 0.22 -8.04 16 13 C -0.12 -5.38 5.85 -20.13 -0.12 -5.50 16 14 C 0.59 23.22 7.41 86.80 0.64 23.86 16 15 O -0.55 -23.91 14.06 -3.86 -0.05 -23.96 16 16 N -0.64 -19.57 3.06 -907.10 -2.77 -22.34 16 17 C 0.05 1.26 5.17 86.75 0.45 1.71 16 18 C 0.04 0.69 7.89 72.64 0.57 1.26 16 19 O -0.35 -7.69 11.19 -148.98 -1.67 -9.36 16 20 C 0.27 7.19 3.46 86.25 0.30 7.49 16 21 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 22 C 0.43 13.25 2.95 71.98 0.21 13.46 16 23 F -0.18 -5.90 17.18 44.97 0.77 -5.13 16 24 F -0.17 -6.15 14.08 44.97 0.63 -5.52 16 25 F -0.17 -4.80 17.28 44.97 0.78 -4.02 16 26 C -0.21 -8.78 8.18 23.01 0.19 -8.60 16 27 H 0.29 12.57 8.30 -92.71 -0.77 11.80 16 28 H 0.12 6.16 5.83 -2.91 -0.02 6.15 16 29 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.11 4.61 7.67 -2.91 -0.02 4.58 16 31 H 0.10 2.27 7.23 -2.39 -0.02 2.26 16 32 H 0.12 2.90 6.44 -2.38 -0.02 2.89 16 33 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.15 5.30 3.43 -2.91 -0.01 5.29 16 Total: -1.00 -59.89 306.71 4.54 -55.35 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.17 Total: 22.47 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 3.43 Total: -4.49 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -2.54 Total: -61.69 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.72 Total: -33.32 kcal Atomic # 9 Polarization: -16.85 SS G_CDS: 2.18 Total: -14.66 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Total: -59.89 4.54 -55.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912083139.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.903 kcal (2) G-P(sol) polarization free energy of solvation -59.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds