Wall clock time and date at job start Tue Mar 31 2020 11:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86796 * 120.00083 * 2 1 4 4 H 1.48507 * 109.47451 * 240.00310 * 3 2 1 5 5 H 1.48500 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47365 * 120.00499 * 3 2 1 7 7 C 1.40231 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00082 * 196.77162 * 7 2 1 9 9 C 1.41112 * 119.99983 * 16.77269 * 7 2 1 10 10 C 1.40882 * 120.10344 * 205.32396 * 9 7 2 11 11 C 1.36315 * 119.89336 * 179.97438 * 10 9 7 12 12 C 1.40007 * 120.10725 * 359.97438 * 11 10 9 13 13 C 1.47638 * 119.89761 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00356 * 202.91576 * 13 12 11 15 15 N 1.34775 * 119.99803 * 22.91943 * 13 12 11 16 16 C 1.47973 * 126.93998 * 357.54801 * 15 13 12 17 17 C 1.54929 * 102.92057 * 158.82243 * 16 15 13 18 18 O 1.44648 * 102.34295 * 36.03215 * 17 16 15 19 19 C 1.43723 * 105.57889 * 322.45730 * 18 17 16 20 20 H 1.09000 * 109.72091 * 265.47003 * 19 18 17 21 21 C 1.52994 * 109.71581 * 144.86725 * 19 18 17 22 22 F 1.39902 * 109.46789 * 61.45588 * 21 19 18 23 23 F 1.39906 * 109.47433 * 181.45377 * 21 19 18 24 24 F 1.39898 * 109.47327 * 301.45835 * 21 19 18 25 25 C 1.40021 * 120.20888 * 0.28208 * 12 11 10 26 26 C 1.36320 * 120.10140 * 359.47954 * 25 12 11 27 27 H 0.96999 * 120.00418 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.05049 * 359.95169 * 10 9 7 29 29 H 1.07995 * 119.94649 * 179.97438 * 11 10 9 30 30 H 1.09008 * 110.75270 * 40.42128 * 16 15 13 31 31 H 1.08997 * 110.75738 * 277.23787 * 16 15 13 32 32 H 1.09002 * 110.82972 * 154.23910 * 17 16 15 33 33 H 1.08995 * 110.83275 * 277.81695 * 17 16 15 34 34 H 1.08001 * 119.94546 * 179.72459 * 25 12 11 35 35 H 1.07998 * 120.04919 * 180.25955 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6965 -1.2126 5 1 1.2754 2.7464 0.0006 6 1 3.0942 1.6963 1.2124 7 6 2.0075 -1.2144 -0.0005 8 1 3.0530 -1.2345 0.2693 9 6 1.3470 -2.4103 -0.3537 10 6 1.8197 -3.6473 0.1272 11 6 1.1780 -4.7999 -0.2162 12 6 0.0505 -4.7557 -1.0451 13 6 -0.6406 -6.0069 -1.4147 14 8 -1.3241 -6.0501 -2.4193 15 7 -0.5139 -7.1013 -0.6383 16 6 0.3128 -7.2354 0.5816 17 6 -0.3409 -8.4345 1.3130 18 8 -0.7293 -9.2921 0.2149 19 6 -1.1725 -8.4075 -0.8276 20 1 -2.2544 -8.2867 -0.7722 21 6 -0.7867 -8.9831 -2.1916 22 9 -1.4170 -10.2191 -2.3713 23 9 -1.1910 -8.1024 -3.2007 24 9 0.6005 -9.1542 -2.2501 25 6 -0.4199 -3.5293 -1.5300 26 6 0.2124 -2.3710 -1.1880 27 1 -0.4851 0.8400 0.0004 28 1 2.6893 -3.6823 0.7667 29 1 1.5399 -5.7485 0.1516 30 1 0.2530 -6.3328 1.1899 31 1 1.3483 -7.4578 0.3240 32 1 0.3808 -8.9348 1.9589 33 1 -1.2137 -8.1130 1.8812 34 1 -1.2874 -3.5006 -2.1727 35 1 -0.1537 -1.4252 -1.5590 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912088864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:00 Heat of formation + Delta-G solvation = -186.175565 kcal Electronic energy + Delta-G solvation = -26723.059025 eV Core-core repulsion = 22271.854676 eV Total energy + Delta-G solvation = -4451.204349 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.86233 -47.45192 -47.28092 -40.49888 -38.42153 -37.09359 -34.27295 -33.76731 -31.08290 -30.20626 -29.57765 -27.54367 -25.84936 -23.84533 -23.15195 -21.60950 -21.03440 -19.69908 -18.58096 -18.30446 -17.84819 -17.62204 -16.89630 -16.21244 -15.72465 -15.41662 -14.87953 -14.60002 -14.37326 -14.29771 -14.19122 -14.05374 -13.80379 -13.49764 -13.45712 -13.41538 -13.05222 -12.89722 -12.63494 -12.29861 -12.15889 -11.94125 -11.59288 -11.45000 -11.23904 -11.07591 -10.69973 -10.42832 -10.09491 -9.60020 -9.43368 -9.25914 -8.83989 -7.80237 -7.67726 -7.10033 -4.70177 2.06760 2.52292 2.78671 2.86026 2.90200 2.92279 2.94939 3.27123 3.55634 3.68842 3.90774 4.20594 4.41134 4.42467 4.58900 4.71644 4.87927 5.01842 5.32237 5.43867 5.49449 5.60382 5.80389 6.02083 6.17015 6.27004 6.71769 6.74212 6.92224 6.99272 7.33573 7.45921 7.54219 7.75295 7.85929 7.97449 8.32895 8.53615 8.63592 8.67747 9.81494 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.029897 B = 0.003381 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.326109 B = 8280.768338 C = 8704.906577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.440 4.440 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.234 4.234 11 C -0.065 4.065 12 C -0.279 4.279 13 C 0.593 3.407 14 O -0.536 6.536 15 N -0.641 5.641 16 C 0.067 3.933 17 C 0.036 3.964 18 O -0.351 6.351 19 C 0.266 3.734 20 H 0.118 0.882 21 C 0.438 3.562 22 F -0.182 7.182 23 F -0.147 7.147 24 F -0.179 7.179 25 C -0.034 4.034 26 C -0.179 4.179 27 H 0.289 0.711 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 -10.511 3.840 11.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.253 4.253 11 C -0.083 4.083 12 C -0.284 4.284 13 C 0.391 3.609 14 O -0.414 6.414 15 N -0.384 5.384 16 C -0.055 4.055 17 C -0.040 4.040 18 O -0.268 6.268 19 C 0.120 3.880 20 H 0.135 0.865 21 C 0.382 3.618 22 F -0.164 7.164 23 F -0.128 7.128 24 F -0.160 7.160 25 C -0.054 4.054 26 C -0.198 4.198 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.960 -10.519 3.207 11.039 hybrid contribution 0.420 0.720 -0.072 0.836 sum -0.540 -9.799 3.135 10.303 Atomic orbital electron populations 1.69717 1.07935 1.30371 1.31109 1.26115 0.94843 1.01966 0.91898 0.86238 0.80197 0.79365 0.80368 1.18409 1.19972 1.18638 1.19846 0.98023 0.91110 1.37792 0.89671 1.17805 0.90456 0.92183 0.87025 1.20694 1.04203 0.92756 1.07673 1.20910 0.94520 0.97537 0.95336 1.18614 1.04164 0.90614 1.14980 1.18590 0.80013 0.81342 0.80982 1.90775 1.42104 1.83307 1.25218 1.49387 1.49006 1.10267 1.29714 1.23515 0.95577 1.00025 0.86405 1.24206 1.00275 0.90105 0.89375 1.89178 1.85264 1.28017 1.24302 1.23425 0.98580 0.80671 0.85351 0.86511 1.20982 0.75284 0.76288 0.89220 1.93172 1.82220 1.44838 1.96163 1.93395 1.90030 1.67413 1.62011 1.93171 1.30523 1.95368 1.96968 1.20423 0.97555 0.91329 0.96073 1.21012 0.99802 0.96917 1.02086 0.89997 0.88357 0.87707 0.86895 0.89543 0.86491 0.89980 0.88250 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.02 10.93 55.56 0.61 -17.41 16 2 C 0.07 1.67 5.15 -17.31 -0.09 1.58 16 3 Si 0.91 16.77 29.59 -169.99 -5.03 11.74 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 7 C -0.44 -10.50 9.05 -37.74 -0.34 -10.84 16 8 H 0.09 1.92 7.90 -52.49 -0.41 1.50 16 9 C 0.13 3.13 5.57 -106.81 -0.60 2.53 16 10 C -0.23 -5.09 9.73 -39.27 -0.38 -5.47 16 11 C -0.06 -1.29 8.06 -39.61 -0.32 -1.61 16 12 C -0.28 -6.07 5.81 -104.73 -0.61 -6.68 16 13 C 0.59 12.14 7.47 -12.42 -0.09 12.05 16 14 O -0.54 -12.30 13.79 5.29 0.07 -12.22 16 15 N -0.64 -10.47 3.06 -169.07 -0.52 -10.99 16 16 C 0.07 0.83 5.24 -2.22 -0.01 0.82 16 17 C 0.04 0.35 7.89 38.18 0.30 0.65 16 18 O -0.35 -4.46 11.19 -35.23 -0.39 -4.85 16 19 C 0.27 3.90 3.53 -3.49 -0.01 3.88 16 20 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 21 C 0.44 7.12 2.95 37.15 0.11 7.23 16 22 F -0.18 -2.74 17.28 2.25 0.04 -2.71 16 23 F -0.15 -2.79 13.79 2.25 0.03 -2.76 16 24 F -0.18 -3.00 17.17 2.25 0.04 -2.96 16 25 C -0.03 -0.80 9.52 -39.60 -0.38 -1.18 16 26 C -0.18 -4.38 8.63 -39.27 -0.34 -4.72 16 27 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 28 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 29 H 0.11 1.72 4.20 -52.49 -0.22 1.50 16 30 H 0.11 1.39 6.43 -51.92 -0.33 1.06 16 31 H 0.09 1.01 7.24 -51.93 -0.38 0.64 16 32 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 2.27 7.80 -52.49 -0.41 1.86 16 35 H 0.12 3.07 6.16 -52.49 -0.32 2.74 16 LS Contribution 307.23 15.07 4.63 4.63 Total: -1.00 -27.99 307.23 -6.18 -34.17 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -2.90 Total: 5.13 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.76 Total: -1.77 kcal Atomic # 7 Polarization: -28.49 SS G_CDS: 0.09 Total: -28.40 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.32 Total: -17.07 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 0.11 Total: -8.43 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.99 -6.18 -34.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912088864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.002 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds