Wall clock time and date at job start Tue Mar 31 2020 11:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86796 * 120.00083 * 2 1 4 4 H 1.48507 * 109.47451 * 240.00310 * 3 2 1 5 5 H 1.48500 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47365 * 120.00499 * 3 2 1 7 7 C 1.40231 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00082 * 196.77162 * 7 2 1 9 9 C 1.41112 * 119.99983 * 16.77269 * 7 2 1 10 10 C 1.40882 * 120.10344 * 205.32396 * 9 7 2 11 11 C 1.36315 * 119.89336 * 179.97438 * 10 9 7 12 12 C 1.40007 * 120.10725 * 359.97438 * 11 10 9 13 13 C 1.47638 * 119.89761 * 179.97438 * 12 11 10 14 14 O 1.21589 * 120.00356 * 202.91576 * 13 12 11 15 15 N 1.34775 * 119.99803 * 22.91943 * 13 12 11 16 16 C 1.47973 * 126.93998 * 357.54801 * 15 13 12 17 17 C 1.54929 * 102.92057 * 158.82243 * 16 15 13 18 18 O 1.44648 * 102.34295 * 36.03215 * 17 16 15 19 19 C 1.43723 * 105.57889 * 322.45730 * 18 17 16 20 20 H 1.09000 * 109.72091 * 265.47003 * 19 18 17 21 21 C 1.52994 * 109.71581 * 144.86725 * 19 18 17 22 22 F 1.39902 * 109.46789 * 61.45588 * 21 19 18 23 23 F 1.39906 * 109.47433 * 181.45377 * 21 19 18 24 24 F 1.39898 * 109.47327 * 301.45835 * 21 19 18 25 25 C 1.40021 * 120.20888 * 0.28208 * 12 11 10 26 26 C 1.36320 * 120.10140 * 359.47954 * 25 12 11 27 27 H 0.96999 * 120.00418 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.05049 * 359.95169 * 10 9 7 29 29 H 1.07995 * 119.94649 * 179.97438 * 11 10 9 30 30 H 1.09008 * 110.75270 * 40.42128 * 16 15 13 31 31 H 1.08997 * 110.75738 * 277.23787 * 16 15 13 32 32 H 1.09002 * 110.82972 * 154.23910 * 17 16 15 33 33 H 1.08995 * 110.83275 * 277.81695 * 17 16 15 34 34 H 1.08001 * 119.94546 * 179.72459 * 25 12 11 35 35 H 1.07998 * 120.04919 * 180.25955 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6965 -1.2126 5 1 1.2754 2.7464 0.0006 6 1 3.0942 1.6963 1.2124 7 6 2.0075 -1.2144 -0.0005 8 1 3.0530 -1.2345 0.2693 9 6 1.3470 -2.4103 -0.3537 10 6 1.8197 -3.6473 0.1272 11 6 1.1780 -4.7999 -0.2162 12 6 0.0505 -4.7557 -1.0451 13 6 -0.6406 -6.0069 -1.4147 14 8 -1.3241 -6.0501 -2.4193 15 7 -0.5139 -7.1013 -0.6383 16 6 0.3128 -7.2354 0.5816 17 6 -0.3409 -8.4345 1.3130 18 8 -0.7293 -9.2921 0.2149 19 6 -1.1725 -8.4075 -0.8276 20 1 -2.2544 -8.2867 -0.7722 21 6 -0.7867 -8.9831 -2.1916 22 9 -1.4170 -10.2191 -2.3713 23 9 -1.1910 -8.1024 -3.2007 24 9 0.6005 -9.1542 -2.2501 25 6 -0.4199 -3.5293 -1.5300 26 6 0.2124 -2.3710 -1.1880 27 1 -0.4851 0.8400 0.0004 28 1 2.6893 -3.6823 0.7667 29 1 1.5399 -5.7485 0.1516 30 1 0.2530 -6.3328 1.1899 31 1 1.3483 -7.4578 0.3240 32 1 0.3808 -8.9348 1.9589 33 1 -1.2137 -8.1130 1.8812 34 1 -1.2874 -3.5006 -2.1727 35 1 -0.1537 -1.4252 -1.5590 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912088864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:59 Heat of formation + Delta-G solvation = -203.027415 kcal Electronic energy + Delta-G solvation = -26723.789776 eV Core-core repulsion = 22271.854676 eV Total energy + Delta-G solvation = -4451.935100 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.15585 -48.71243 -48.63545 -41.73033 -39.88851 -38.75506 -35.83317 -35.18899 -32.29878 -31.86094 -31.19751 -28.88448 -27.44144 -25.07592 -24.32711 -23.19736 -22.64910 -21.15780 -19.82051 -19.63102 -19.33383 -19.13673 -18.24416 -17.56776 -17.20525 -16.68374 -16.22099 -15.87162 -15.73812 -15.58089 -15.52881 -15.41770 -15.09720 -14.99343 -14.82757 -14.80257 -14.57125 -14.25553 -14.08928 -13.75349 -13.63399 -13.32904 -13.17718 -12.85492 -12.65982 -12.55401 -12.24427 -11.77739 -11.40533 -11.20744 -11.12312 -10.88545 -10.16581 -9.56271 -9.44044 -8.78802 -6.49412 0.39039 1.14816 1.26515 1.39134 1.44265 1.52189 1.54240 1.97309 2.15682 2.16624 2.62450 2.75718 2.98147 3.35736 3.52029 3.62951 3.66153 3.87843 4.09422 4.15937 4.39521 4.40091 4.62802 4.69162 4.84004 4.98181 5.01583 5.17109 5.19199 5.25622 5.58182 5.75522 5.90600 6.00006 6.18228 6.27940 6.55412 6.76493 6.88183 7.09354 8.15514 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.029897 B = 0.003381 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.326109 B = 8280.768338 C = 8704.906577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.470 4.470 8 H 0.093 0.907 9 C 0.102 3.898 10 C -0.243 4.243 11 C -0.051 4.051 12 C -0.287 4.287 13 C 0.594 3.406 14 O -0.569 6.569 15 N -0.640 5.640 16 C 0.053 3.947 17 C 0.043 3.957 18 O -0.351 6.351 19 C 0.270 3.730 20 H 0.131 0.869 21 C 0.434 3.566 22 F -0.176 7.176 23 F -0.167 7.167 24 F -0.183 7.183 25 C -0.047 4.047 26 C -0.200 4.200 27 H 0.295 0.705 28 H 0.118 0.882 29 H 0.147 0.853 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.156 0.844 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.718 -11.711 5.696 13.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.183 4.183 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.498 4.498 8 H 0.111 0.889 9 C 0.099 3.901 10 C -0.262 4.262 11 C -0.069 4.069 12 C -0.292 4.292 13 C 0.391 3.609 14 O -0.449 6.449 15 N -0.382 5.382 16 C -0.068 4.068 17 C -0.032 4.032 18 O -0.268 6.268 19 C 0.125 3.875 20 H 0.148 0.852 21 C 0.378 3.622 22 F -0.157 7.157 23 F -0.149 7.149 24 F -0.165 7.165 25 C -0.067 4.067 26 C -0.219 4.219 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.164 0.836 30 H 0.134 0.866 31 H 0.117 0.883 32 H 0.173 0.827 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.138 -11.767 5.105 12.827 hybrid contribution 0.051 0.928 -0.618 1.116 sum 0.189 -10.839 4.488 11.733 Atomic orbital electron populations 1.69772 1.09417 1.31606 1.31693 1.26962 0.95461 1.05037 0.90848 0.85172 0.78810 0.75001 0.80418 1.18469 1.19294 1.17637 1.20155 0.98569 0.91953 1.39076 0.88938 1.18162 0.90719 0.93777 0.87487 1.20967 1.04936 0.92404 1.07891 1.21262 0.93050 0.98836 0.93770 1.18859 1.04793 0.90726 1.14785 1.18283 0.79635 0.82060 0.80971 1.90758 1.43267 1.84147 1.26739 1.49200 1.49036 1.09879 1.30038 1.23840 0.96024 1.01748 0.85141 1.24501 1.01727 0.88602 0.88412 1.89211 1.85264 1.27809 1.24503 1.23442 0.99062 0.79876 0.85154 0.85218 1.21266 0.75083 0.76325 0.89557 1.93180 1.82041 1.44321 1.96169 1.93357 1.90219 1.68202 1.63093 1.93156 1.30923 1.95395 1.97008 1.20489 0.97565 0.92190 0.96411 1.20929 1.00983 0.96558 1.03464 0.89350 0.86359 0.83585 0.86603 0.88276 0.82673 0.88216 0.89010 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.58 10.93 21.87 0.24 -38.34 16 2 C 0.04 1.64 5.15 85.35 0.44 2.08 16 3 Si 0.99 34.18 29.59 68.60 2.03 36.21 16 4 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 5 H -0.27 -8.92 7.11 99.48 0.71 -8.22 16 6 H -0.25 -8.31 7.11 99.48 0.71 -7.61 16 7 C -0.47 -22.70 9.05 23.46 0.21 -22.49 16 8 H 0.09 4.16 7.90 -2.91 -0.02 4.14 16 9 C 0.10 5.04 5.57 -21.28 -0.12 4.92 16 10 C -0.24 -10.36 9.73 22.47 0.22 -10.14 16 11 C -0.05 -1.96 8.06 22.25 0.18 -1.78 16 12 C -0.29 -12.45 5.81 -19.93 -0.12 -12.57 16 13 C 0.59 24.00 7.47 86.73 0.65 24.65 16 14 O -0.57 -26.37 13.79 -3.99 -0.06 -26.43 16 15 N -0.64 -19.59 3.06 -906.38 -2.78 -22.37 16 16 C 0.05 1.12 5.24 86.76 0.45 1.58 16 17 C 0.04 0.61 7.89 72.64 0.57 1.19 16 18 O -0.35 -7.62 11.19 -148.98 -1.67 -9.29 16 19 C 0.27 7.31 3.53 86.18 0.30 7.62 16 20 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 21 C 0.43 13.51 2.95 71.98 0.21 13.72 16 22 F -0.18 -5.02 17.28 44.97 0.78 -4.25 16 23 F -0.17 -6.33 13.79 44.97 0.62 -5.71 16 24 F -0.18 -5.87 17.17 44.97 0.77 -5.10 16 25 C -0.05 -2.28 9.52 22.25 0.21 -2.07 16 26 C -0.20 -10.21 8.63 22.47 0.19 -10.01 16 27 H 0.30 12.81 8.29 -92.71 -0.77 12.04 16 28 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 29 H 0.15 4.29 4.20 -2.91 -0.01 4.28 16 30 H 0.12 2.43 6.43 -2.38 -0.02 2.41 16 31 H 0.10 1.89 7.24 -2.39 -0.02 1.87 16 32 H 0.16 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 4.45 7.80 -2.91 -0.02 4.43 16 35 H 0.10 5.56 6.16 -2.91 -0.02 5.55 16 Total: -1.00 -62.56 307.23 4.52 -58.05 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 1.16 Total: 20.54 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 3.41 Total: -3.33 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -2.54 Total: -60.70 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.72 Total: -35.71 kcal Atomic # 9 Polarization: -17.22 SS G_CDS: 2.17 Total: -15.06 kcal Atomic # 14 Polarization: 34.18 SS G_CDS: 2.03 Total: 36.21 kcal Total: -62.56 4.52 -58.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912088864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.982 kcal (2) G-P(sol) polarization free energy of solvation -62.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds