Wall clock time and date at job start Tue Mar 31 2020 11:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48502 * 109.47216 * 240.00083 * 3 2 1 5 5 H 1.48504 * 109.47368 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47384 * 119.99806 * 3 2 1 7 7 C 1.40225 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99931 * 175.23869 * 7 2 1 9 9 C 1.41104 * 120.00287 * 355.24227 * 7 2 1 10 10 C 1.40886 * 120.10277 * 214.90509 * 9 7 2 11 11 C 1.36320 * 119.89009 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.10722 * 359.97438 * 11 10 9 13 13 C 1.47644 * 119.89637 * 179.97438 * 12 11 10 14 14 O 1.21591 * 119.99477 * 335.66690 * 13 12 11 15 15 N 1.34767 * 120.00121 * 155.67001 * 13 12 11 16 16 C 1.47973 * 126.94145 * 353.95583 * 15 13 12 17 17 C 1.54928 * 102.75624 * 201.28138 * 16 15 13 18 18 O 1.44636 * 102.34515 * 323.87968 * 17 16 15 19 19 C 1.43736 * 105.58054 * 37.53705 * 18 17 16 20 20 H 1.09001 * 109.71602 * 94.58105 * 19 18 17 21 21 C 1.53001 * 109.71841 * 215.13318 * 19 18 17 22 22 F 1.39906 * 109.47067 * 58.54174 * 21 19 18 23 23 F 1.39893 * 109.47008 * 178.54615 * 21 19 18 24 24 F 1.39906 * 109.46819 * 298.54897 * 21 19 18 25 25 C 1.40010 * 120.21142 * 0.25873 * 12 11 10 26 26 C 1.36321 * 120.10449 * 359.47769 * 25 12 11 27 27 H 0.97004 * 120.00035 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.05571 * 0.04568 * 10 9 7 29 29 H 1.08004 * 119.94626 * 179.97438 * 11 10 9 30 30 H 1.09006 * 110.75560 * 82.96055 * 16 15 13 31 31 H 1.09005 * 110.75329 * 319.59676 * 16 15 13 32 32 H 1.08995 * 110.82899 * 205.66793 * 17 16 15 33 33 H 1.09000 * 111.00349 * 82.17003 * 17 16 15 34 34 H 1.07995 * 119.95151 * 179.74673 * 25 12 11 35 35 H 1.07997 * 120.05618 * 180.27489 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6965 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0942 1.6965 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0848 -1.2160 -0.0771 9 6 1.3058 -2.4343 0.1024 10 6 1.8686 -3.5165 0.8073 11 6 1.1870 -4.6933 0.9026 12 6 -0.0705 -4.8271 0.3018 13 6 -0.8044 -6.1039 0.4075 14 8 -0.1975 -7.1397 0.6003 15 7 -2.1469 -6.1212 0.2901 16 6 -3.0451 -4.9505 0.1793 17 6 -4.4128 -5.5252 0.6257 18 8 -4.3745 -6.8674 0.0881 19 6 -3.0158 -7.3085 0.2474 20 1 -2.9179 -7.8695 1.1768 21 6 -2.6193 -8.1961 -0.9341 22 9 -2.7656 -7.4785 -2.1262 23 9 -1.2862 -8.5952 -0.7907 24 9 -3.4437 -9.3259 -0.9659 25 6 -0.6318 -3.7560 -0.4038 26 6 0.0398 -2.5736 -0.4999 27 1 -0.4850 0.8401 -0.0004 28 1 2.8383 -3.4140 1.2716 29 1 1.6178 -5.5237 1.4423 30 1 -3.0924 -4.5960 -0.8504 31 1 -2.7242 -4.1527 0.8492 32 1 -5.2334 -4.9561 0.1891 33 1 -4.4922 -5.5452 1.7126 34 1 -1.6003 -3.8652 -0.8690 35 1 -0.3959 -1.7465 -1.0407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912088866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:02 Heat of formation + Delta-G solvation = -205.279504 kcal Electronic energy + Delta-G solvation = -26821.488639 eV Core-core repulsion = 22369.455880 eV Total energy + Delta-G solvation = -4452.032758 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.18737 -48.73077 -48.68337 -41.75580 -39.92210 -38.77059 -35.70055 -35.24063 -32.37002 -31.64434 -31.32457 -28.88339 -27.43759 -25.07453 -24.32522 -23.15791 -22.66897 -21.20229 -19.85178 -19.60921 -19.32175 -19.14916 -18.28427 -17.61069 -17.21354 -16.68019 -16.21694 -15.86629 -15.73146 -15.58136 -15.57047 -15.42102 -15.12117 -14.96124 -14.86244 -14.83906 -14.60644 -14.29486 -14.07857 -13.71286 -13.64175 -13.37617 -13.16033 -12.81753 -12.66940 -12.55783 -12.35384 -11.77682 -11.46272 -11.23015 -11.12735 -10.93992 -10.16451 -9.58050 -9.31326 -8.64524 -6.52090 0.35040 1.11860 1.25208 1.42364 1.44956 1.52261 1.53071 1.94498 2.14768 2.20281 2.61543 2.77262 2.96606 3.32384 3.51362 3.60045 3.61343 3.85844 4.04283 4.13538 4.37839 4.41688 4.61676 4.68929 4.81928 4.95497 5.05763 5.12977 5.19526 5.29958 5.61673 5.72908 5.92535 6.01777 6.20661 6.24540 6.57204 6.81348 6.88103 7.04013 8.26093 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.025837 B = 0.003621 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.451073 B = 7731.212174 C = 8295.707951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.481 4.481 8 H 0.081 0.919 9 C 0.100 3.900 10 C -0.238 4.238 11 C -0.037 4.037 12 C -0.274 4.274 13 C 0.596 3.404 14 O -0.564 6.564 15 N -0.640 5.640 16 C 0.060 3.940 17 C 0.044 3.956 18 O -0.351 6.351 19 C 0.271 3.729 20 H 0.134 0.866 21 C 0.435 3.565 22 F -0.183 7.183 23 F -0.170 7.170 24 F -0.174 7.174 25 C -0.066 4.066 26 C -0.183 4.183 27 H 0.293 0.707 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.153 0.847 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 -4.322 0.970 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.181 4.181 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.510 4.510 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.258 4.258 11 C -0.056 4.056 12 C -0.278 4.278 13 C 0.393 3.607 14 O -0.444 6.444 15 N -0.381 5.381 16 C -0.061 4.061 17 C -0.031 4.031 18 O -0.268 6.268 19 C 0.125 3.875 20 H 0.151 0.849 21 C 0.379 3.621 22 F -0.165 7.165 23 F -0.151 7.151 24 F -0.155 7.155 25 C -0.084 4.084 26 C -0.202 4.202 27 H 0.104 0.896 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.171 0.829 33 H 0.120 0.880 34 H 0.148 0.852 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.562 -4.850 0.962 11.662 hybrid contribution 0.771 0.457 -0.196 0.917 sum -9.791 -4.393 0.766 10.759 Atomic orbital electron populations 1.69682 1.08671 1.30989 1.34451 1.26816 0.95825 1.04336 0.91120 0.85129 0.78661 0.75296 0.79973 1.18458 1.18903 1.18719 1.20008 0.95494 0.91205 1.44265 0.90078 1.18204 0.92812 0.92358 0.86955 1.20982 1.02191 0.95278 1.07320 1.20483 0.92795 0.96188 0.96150 1.18983 0.98692 0.94066 1.16101 1.18246 0.78931 0.89390 0.74168 1.90741 1.67456 1.35264 1.50964 1.49123 1.05950 1.07439 1.75599 1.23690 0.89121 0.89274 1.04011 1.24460 0.97524 0.79656 1.01463 1.89210 1.20518 1.33221 1.83806 1.23379 0.80914 0.88296 0.94922 0.84946 1.21269 0.75397 0.80336 0.85145 1.93168 1.95410 1.77907 1.49992 1.93325 1.34937 1.91274 1.95601 1.93185 1.72173 1.53460 1.96704 1.21168 0.98932 0.91848 0.96502 1.21281 0.97814 0.97046 1.04103 0.89580 0.87485 0.87524 0.88866 0.87297 0.82941 0.87998 0.85164 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.32 10.59 21.87 0.23 -37.08 16 2 C 0.04 1.60 5.43 85.35 0.46 2.07 16 3 Si 0.99 34.41 29.56 68.60 2.03 36.43 16 4 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 5 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 6 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 7 C -0.48 -23.66 9.03 23.46 0.21 -23.45 16 8 H 0.08 3.85 7.85 -2.91 -0.02 3.82 16 9 C 0.10 4.97 5.55 -21.28 -0.12 4.85 16 10 C -0.24 -11.20 9.73 22.47 0.22 -10.99 16 11 C -0.04 -1.66 9.52 22.25 0.21 -1.45 16 12 C -0.27 -11.75 5.74 -19.93 -0.11 -11.86 16 13 C 0.60 23.67 7.26 86.73 0.63 24.30 16 14 O -0.56 -25.16 14.25 -4.00 -0.06 -25.22 16 15 N -0.64 -19.80 3.06 -907.32 -2.77 -22.57 16 16 C 0.06 1.39 5.28 86.76 0.46 1.85 16 17 C 0.04 0.69 7.89 72.64 0.57 1.26 16 18 O -0.35 -7.83 11.19 -148.98 -1.67 -9.50 16 19 C 0.27 7.34 3.46 86.25 0.30 7.63 16 20 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 21 C 0.43 13.46 2.95 71.98 0.21 13.67 16 22 F -0.18 -5.93 17.18 44.97 0.77 -5.16 16 23 F -0.17 -6.29 14.08 44.97 0.63 -5.65 16 24 F -0.17 -4.93 17.28 44.97 0.78 -4.15 16 25 C -0.07 -2.73 8.17 22.25 0.18 -2.55 16 26 C -0.18 -8.61 8.61 22.47 0.19 -8.42 16 27 H 0.29 12.07 8.29 -92.71 -0.77 11.30 16 28 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 29 H 0.11 4.58 7.82 -2.91 -0.02 4.56 16 30 H 0.09 2.09 6.74 -2.38 -0.02 2.08 16 31 H 0.11 2.59 7.23 -2.38 -0.02 2.57 16 32 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.13 4.50 4.62 -2.91 -0.01 4.48 16 35 H 0.12 5.98 6.12 -2.91 -0.02 5.96 16 Total: -1.00 -59.66 308.30 4.53 -55.14 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.16 Total: 20.84 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 3.42 Total: -3.07 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -2.54 Total: -59.66 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.72 Total: -34.71 kcal Atomic # 9 Polarization: -17.15 SS G_CDS: 2.18 Total: -14.97 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.43 kcal Total: -59.66 4.53 -55.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912088866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.144 kcal (2) G-P(sol) polarization free energy of solvation -59.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds