Wall clock time and date at job start Tue Mar 31 2020 11:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00065 * 2 1 4 4 H 1.48498 * 109.47152 * 239.99765 * 3 2 1 5 5 H 1.48496 * 109.47174 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46999 * 119.99796 * 3 2 1 7 7 C 1.37880 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99606 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99634 * 180.02562 * 10 9 7 12 12 O 1.21716 * 120.00258 * 359.97438 * 11 10 9 13 13 C 1.46246 * 119.99525 * 180.02562 * 11 10 9 14 14 C 1.35000 * 119.99583 * 187.00833 * 13 11 10 15 15 C 1.46944 * 120.00039 * 9.56001 * 14 13 11 16 16 C 1.39929 * 120.21504 * 44.96406 * 15 14 13 17 17 C 1.37750 * 119.88310 * 179.97438 * 16 15 14 18 18 C 1.38568 * 120.31735 * 0.02562 * 17 16 15 19 19 C 1.38124 * 120.43843 * 0.02562 * 18 17 16 20 20 C 1.38609 * 120.11048 * 359.97438 * 19 18 17 21 21 O 1.35686 * 120.16195 * 179.97438 * 20 19 18 22 22 C 1.42906 * 116.99712 * 359.97438 * 21 20 19 23 23 F 1.39897 * 109.47147 * 60.00454 * 22 21 20 24 24 F 1.39904 * 109.46800 * 180.02562 * 22 21 20 25 25 F 1.39899 * 109.47256 * 299.99942 * 22 21 20 26 26 H 0.97003 * 119.99847 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46587 * 60.00238 * 9 7 2 28 28 H 1.08997 * 109.47318 * 300.00382 * 9 7 2 29 29 H 0.96997 * 120.00233 * 0.02562 * 10 9 7 30 30 H 1.08002 * 120.00392 * 6.99822 * 13 11 10 31 31 H 1.07997 * 119.99973 * 189.56575 * 14 13 11 32 32 H 1.08001 * 120.05714 * 359.94952 * 16 15 14 33 33 H 1.07995 * 119.83834 * 180.02562 * 17 16 15 34 34 H 1.08007 * 119.77842 * 180.28217 * 18 17 16 35 35 H 1.08006 * 119.94362 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5570 -5.1058 0.0000 13 6 2.7041 -5.9949 0.0006 14 6 2.2608 -7.2620 -0.1426 15 6 0.8598 -7.5134 -0.5077 16 6 0.2540 -6.7719 -1.5281 17 6 -1.0596 -7.0136 -1.8650 18 6 -1.7850 -7.9877 -1.1979 19 6 -1.2005 -8.7267 -0.1879 20 6 0.1201 -8.4984 0.1658 21 8 0.6952 -9.2234 1.1582 22 6 -0.1196 -10.2075 1.7983 23 9 -0.5517 -11.1426 0.8518 24 9 0.6250 -10.8564 2.7893 25 9 -1.2295 -9.5867 2.3812 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5570 -0.8898 28 1 0.6240 -2.5567 0.8902 29 1 3.1567 -3.4354 0.0009 30 1 3.7606 -5.8021 0.1154 31 1 2.9358 -8.0908 0.0113 32 1 0.8153 -6.0111 -2.0502 33 1 -1.5262 -6.4412 -2.6530 34 1 -2.8130 -8.1731 -1.4723 35 1 -1.7734 -9.4837 0.3270 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914751168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:46 Heat of formation + Delta-G solvation = -180.241135 kcal Electronic energy + Delta-G solvation = -25776.234279 eV Core-core repulsion = 21325.287266 eV Total energy + Delta-G solvation = -4450.947013 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -50.57839 -48.31147 -48.15932 -40.37796 -38.97380 -37.42283 -34.45792 -33.51815 -32.36624 -30.30100 -29.72078 -27.32625 -26.06622 -24.22177 -22.76268 -22.46794 -20.99208 -19.73286 -19.42059 -19.28248 -18.84492 -17.38442 -16.60369 -15.97196 -15.85557 -15.31483 -15.09585 -15.03858 -14.88816 -14.63328 -14.57149 -14.55586 -14.30305 -14.28814 -14.15385 -13.89293 -13.45562 -13.17015 -12.91400 -12.54358 -12.06379 -11.93387 -11.74468 -11.49211 -11.09110 -10.98869 -10.89373 -10.34004 -9.88417 -9.43619 -9.22114 -8.77316 -8.46340 -7.97320 -7.84435 -6.18953 -4.26108 0.84728 1.39198 1.41639 1.97782 2.71776 3.23703 3.28751 3.30054 3.65515 3.71931 3.89789 3.95169 4.13873 4.38156 4.60646 4.75888 4.96758 5.14430 5.17240 5.31888 5.43325 5.53691 5.57707 5.95740 6.02962 6.19910 6.35047 6.41251 6.58000 6.67215 7.02358 7.28517 7.39850 7.48463 7.64515 7.94406 8.59481 8.75238 9.06750 9.40655 10.91099 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.002915 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.416857 B = 9603.175456 C = 9882.528901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.703 5.703 11 C 0.517 3.483 12 O -0.545 6.545 13 C -0.190 4.190 14 C -0.043 4.043 15 C -0.061 4.061 16 C 0.005 3.995 17 C -0.146 4.146 18 C -0.071 4.071 19 C -0.207 4.207 20 C 0.111 3.889 21 O -0.308 6.308 22 C 0.603 3.397 23 F -0.168 7.168 24 F -0.135 7.135 25 F -0.164 7.164 26 H 0.266 0.734 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.391 0.609 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -20.798 -0.966 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.349 5.349 11 C 0.304 3.696 12 O -0.426 6.426 13 C -0.211 4.211 14 C -0.063 4.063 15 C -0.062 4.062 16 C -0.013 4.013 17 C -0.164 4.164 18 C -0.089 4.089 19 C -0.225 4.225 20 C 0.069 3.931 21 O -0.227 6.227 22 C 0.512 3.488 23 F -0.150 7.150 24 F -0.117 7.117 25 F -0.146 7.146 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.224 0.776 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.714 -20.768 -0.868 20.799 hybrid contribution 0.695 0.912 0.396 1.214 sum 1.409 -19.856 -0.471 19.911 Atomic orbital electron populations 1.69962 1.06106 1.27438 1.48745 1.24947 0.94910 0.99444 0.94648 0.86477 0.79430 0.82312 0.78710 1.20052 1.21060 1.20052 1.21195 0.93239 0.90501 1.53438 0.91954 1.19107 0.88294 0.81928 0.97772 1.46499 1.11191 1.06275 1.70949 1.18407 0.88775 0.83791 0.78615 1.90829 1.16335 1.84319 1.51129 1.23271 0.99951 0.93380 1.04534 1.22055 0.93294 0.96461 0.94491 1.18128 0.94245 0.95824 0.97999 1.21016 0.94694 0.92677 0.92907 1.21012 0.94575 0.99050 1.01786 1.20916 0.99454 0.94472 0.94060 1.21218 0.93509 1.04862 1.02931 1.18696 0.92628 0.93009 0.88739 1.86329 1.39348 1.47589 1.49475 1.19371 0.75241 0.77665 0.76496 1.93284 1.89645 1.66928 1.65125 1.93292 1.77469 1.80289 1.60617 1.93311 1.53926 1.82552 1.84853 0.92377 0.95417 0.95454 0.77627 0.85071 0.84869 0.85253 0.85450 0.85525 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.55 -14.59 9.28 -34.44 -0.32 -14.91 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 9 C 0.25 6.47 5.43 -5.20 -0.03 6.45 16 10 N -0.70 -14.37 5.54 -62.94 -0.35 -14.72 16 11 C 0.52 9.95 6.82 -13.04 -0.09 9.86 16 12 O -0.54 -12.17 12.09 5.17 0.06 -12.11 16 13 C -0.19 -2.72 9.93 -37.52 -0.37 -3.09 16 14 C -0.04 -0.58 9.36 -37.21 -0.35 -0.93 16 15 C -0.06 -0.94 4.54 -104.93 -0.48 -1.41 16 16 C 0.01 0.08 6.57 -39.13 -0.26 -0.17 16 17 C -0.15 -2.06 10.02 -39.64 -0.40 -2.46 16 18 C -0.07 -0.92 10.03 -39.50 -0.40 -1.32 16 19 C -0.21 -2.80 8.25 -39.49 -0.33 -3.13 16 20 C 0.11 1.64 6.50 -38.64 -0.25 1.39 16 21 O -0.31 -4.16 9.83 -18.76 -0.18 -4.34 16 22 C 0.60 6.99 3.42 101.05 0.35 7.33 16 23 F -0.17 -1.80 15.56 2.25 0.04 -1.77 16 24 F -0.14 -1.45 17.53 2.25 0.04 -1.41 16 25 F -0.16 -2.02 15.57 2.25 0.04 -1.98 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.39 6.85 8.30 -40.82 -0.34 6.51 16 30 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 2.04 7.06 -52.49 -0.37 1.67 16 33 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 35 H 0.13 1.52 5.10 -52.48 -0.27 1.25 16 LS Contribution 320.75 15.07 4.83 4.83 Total: -1.00 -31.13 320.75 -5.87 -37.00 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -3.05 Total: 4.68 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -3.01 Total: -0.73 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.39 Total: -39.80 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.12 Total: -16.45 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.11 Total: -5.16 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.13 -5.87 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914751168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.241 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds