Wall clock time and date at job start Tue Mar 31 2020 11:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86795 * 119.99724 * 2 1 4 4 H 1.48508 * 109.46999 * 239.99891 * 3 2 1 5 5 H 1.48494 * 109.47714 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47078 * 120.00552 * 3 2 1 7 7 C 1.38645 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00338 * 180.02562 * 7 2 1 9 9 O 1.34837 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.35760 * 116.99569 * 185.05741 * 9 7 2 11 11 C 1.39031 * 119.99143 * 174.18326 * 10 9 7 12 12 C 1.38210 * 120.24332 * 179.71976 * 11 10 9 13 13 C 1.38025 * 120.22254 * 0.55875 * 12 11 10 14 14 C 1.39703 * 119.98295 * 359.71813 * 13 12 11 15 15 N 1.36868 * 120.11738 * 179.97438 * 14 13 12 16 16 C 1.30472 * 120.00245 * 315.01989 * 15 14 13 17 17 C 1.46854 * 119.99930 * 180.02562 * 16 15 14 18 18 C 1.40028 * 120.13287 * 179.97438 * 17 16 15 19 19 C 1.37623 * 120.01076 * 180.02562 * 18 17 16 20 20 C 1.39050 * 120.29531 * 359.97438 * 19 18 17 21 21 O 1.35847 * 119.86627 * 179.97438 * 20 19 18 22 22 C 1.39053 * 120.26914 * 0.02562 * 20 19 18 23 23 O 1.36105 * 120.01043 * 180.02562 * 22 20 19 24 24 C 1.38736 * 119.98345 * 359.72169 * 22 20 19 25 25 O 1.35816 * 120.14790 * 180.29747 * 24 22 20 26 26 C 1.38566 * 119.99389 * 354.45910 * 10 9 7 27 27 H 0.97007 * 119.99739 * 0.02562 * 1 2 3 28 28 H 1.08006 * 119.87344 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.88893 * 180.27525 * 12 11 10 30 30 H 1.07998 * 120.00386 * 179.70435 * 13 12 11 31 31 H 1.07998 * 119.99779 * 0.02562 * 16 15 14 32 32 H 1.07995 * 119.99655 * 0.02911 * 18 17 16 33 33 H 1.07997 * 119.85718 * 179.97438 * 19 18 17 34 34 H 0.96695 * 114.00413 * 89.99725 * 21 20 19 35 35 H 0.96701 * 114.00349 * 89.99585 * 23 22 20 36 36 H 0.96703 * 113.99771 * 270.24078 * 25 24 22 37 37 H 1.07996 * 120.11685 * 359.97220 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 1.4343 -4.7345 0.2337 12 6 2.1778 -5.8950 0.3363 13 6 3.5569 -5.8400 0.3238 14 6 4.2054 -4.6087 0.2012 15 7 5.5728 -4.5510 0.1890 16 6 6.2628 -5.2411 1.0550 17 6 7.7299 -5.1786 1.0422 18 6 8.4731 -5.9177 1.9708 19 6 9.8479 -5.8569 1.9568 20 6 10.5055 -5.0638 1.0230 21 8 11.8629 -5.0098 1.0174 22 6 9.7794 -4.3250 0.0954 23 8 10.4285 -3.5509 -0.8167 24 6 8.3932 -4.3819 0.0958 25 8 7.6808 -3.6664 -0.8125 26 6 3.4540 -3.4378 0.0918 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -4.7835 0.2483 29 1 1.6780 -6.8477 0.4312 30 1 4.1344 -6.7487 0.4090 31 1 5.7548 -5.8582 1.7813 32 1 7.9674 -6.5356 2.6979 33 1 10.4187 -6.4276 2.6744 34 1 12.2808 -5.6758 0.4545 35 1 10.6399 -4.0087 -1.6418 36 1 7.4498 -2.7750 -0.5171 37 1 3.9495 -2.4830 -0.0036 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915983069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:37 Heat of formation + Delta-G solvation = -67.440884 kcal Electronic energy + Delta-G solvation = -24537.405030 eV Core-core repulsion = 20633.206143 eV Total energy + Delta-G solvation = -3904.198887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.65084 -39.27564 -38.14240 -37.40039 -36.85025 -35.90528 -34.82540 -32.29093 -30.78773 -29.50175 -29.20994 -28.17331 -25.38329 -24.37545 -22.92461 -21.96721 -21.64472 -19.97789 -19.19279 -18.33520 -18.02713 -17.64383 -17.30239 -16.34985 -15.87913 -15.24122 -15.18137 -15.07461 -14.91504 -14.39234 -14.23600 -14.12359 -13.72610 -13.27046 -13.15841 -12.96059 -12.74094 -12.29054 -12.01562 -11.83090 -11.71485 -11.20315 -11.12254 -11.01895 -10.95560 -10.53881 -10.47085 -10.32912 -9.67298 -9.32863 -8.87327 -8.85131 -8.67572 -7.72352 -7.31170 -6.48564 -4.08309 0.32212 0.87071 1.62682 2.21955 2.68730 3.12967 3.13564 3.16355 3.36173 3.59815 3.84259 3.94302 4.16496 4.31724 4.51584 4.63578 4.85026 5.03809 5.06744 5.20309 5.31400 5.50845 5.55093 5.56467 5.75483 5.85907 5.97324 6.02947 6.09195 6.20217 6.24769 6.56357 6.71064 6.98160 7.06195 7.07914 7.13933 7.34809 7.43247 7.61208 7.74150 7.95531 8.21314 8.96737 9.63760 10.68980 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.003250 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.471029 B = 8612.177030 C =10150.194296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.173 6.173 10 C 0.159 3.841 11 C -0.190 4.190 12 C -0.067 4.067 13 C -0.234 4.234 14 C 0.108 3.892 15 N -0.432 5.432 16 C 0.164 3.836 17 C -0.086 4.086 18 C -0.069 4.069 19 C -0.148 4.148 20 C 0.104 3.896 21 O -0.487 6.487 22 C 0.042 3.958 23 O -0.480 6.480 24 C 0.145 3.855 25 O -0.463 6.463 26 C -0.207 4.207 27 H 0.271 0.729 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.388 0.612 35 H 0.387 0.613 36 H 0.398 0.602 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.263 -12.830 2.758 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.076 6.076 10 C 0.104 3.896 11 C -0.209 4.209 12 C -0.086 4.086 13 C -0.255 4.255 14 C 0.008 3.992 15 N -0.135 5.135 16 C -0.039 4.039 17 C -0.088 4.088 18 C -0.090 4.090 19 C -0.166 4.166 20 C 0.057 3.943 21 O -0.297 6.297 22 C -0.004 4.004 23 O -0.289 6.289 24 C 0.096 3.904 25 O -0.274 6.274 26 C -0.228 4.228 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.245 0.755 35 H 0.242 0.758 36 H 0.257 0.743 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 18.699 -11.546 2.452 22.113 hybrid contribution 0.233 -0.058 0.001 0.241 sum 18.933 -11.605 2.452 22.341 Atomic orbital electron populations 1.70033 1.05976 1.27902 1.45685 1.25288 0.95848 0.98849 0.96350 0.85781 0.78739 0.79644 0.79313 1.19360 1.20201 1.19457 1.21291 0.91831 0.80745 1.53141 0.89050 1.84005 1.34059 1.11383 1.78131 1.19179 0.89735 0.88291 0.92360 1.20330 0.99828 0.90245 1.10526 1.20496 0.93179 0.96891 0.98029 1.21038 0.95123 0.95931 1.13398 1.18542 0.87554 0.93685 0.99429 1.68642 1.06595 1.18787 1.19515 1.24003 0.91515 0.94111 0.94258 1.19275 0.92397 1.00690 0.96389 1.21083 0.93058 0.97617 0.97216 1.21210 0.94520 1.00424 1.00466 1.18802 0.83411 0.96027 0.96052 1.84867 1.14993 1.59241 1.70594 1.19142 0.89627 0.97358 0.94229 1.84910 1.77342 1.38328 1.28319 1.18917 0.88060 0.94285 0.89120 1.84732 1.72910 1.30746 1.39026 1.20913 0.93112 0.97648 1.11098 0.91879 0.86205 0.86644 0.87517 0.87288 0.84177 0.84420 0.75535 0.75764 0.74303 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 3 Si 0.94 20.65 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -11.06 9.48 30.88 0.29 -10.76 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 9 O -0.17 -4.93 9.76 0.00 0.00 -4.93 16 10 C 0.16 3.87 6.64 -39.17 -0.26 3.61 16 11 C -0.19 -3.99 9.98 -39.30 -0.39 -4.38 16 12 C -0.07 -1.19 10.02 -39.67 -0.40 -1.59 16 13 C -0.23 -4.16 9.18 -39.11 -0.36 -4.52 16 14 C 0.11 2.13 6.17 -84.58 -0.52 1.60 16 15 N -0.43 -7.48 8.25 -9.11 -0.08 -7.55 16 16 C 0.16 2.25 9.84 -14.65 -0.14 2.11 16 17 C -0.09 -1.01 5.88 -104.94 -0.62 -1.63 16 18 C -0.07 -0.60 9.78 -39.14 -0.38 -0.99 16 19 C -0.15 -1.21 9.96 -39.50 -0.39 -1.60 16 20 C 0.10 1.00 6.72 -38.98 -0.26 0.74 16 21 O -0.49 -4.12 13.26 -34.13 -0.45 -4.57 16 22 C 0.04 0.48 6.72 -39.09 -0.26 0.22 16 23 O -0.48 -5.21 13.06 -45.52 -0.59 -5.80 16 24 C 0.15 1.84 6.73 -38.60 -0.26 1.58 16 25 O -0.46 -6.57 11.14 -33.90 -0.38 -6.95 16 26 C -0.21 -4.68 9.11 -38.97 -0.35 -5.04 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 29 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.11 1.62 7.67 -52.49 -0.40 1.21 16 31 H 0.11 1.28 7.51 -52.49 -0.39 0.89 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.39 1.24 9.06 45.56 0.41 1.65 16 35 H 0.39 2.46 9.07 45.56 0.41 2.88 16 36 H 0.40 4.92 9.06 45.56 0.41 5.34 16 37 H 0.13 3.09 5.63 -52.49 -0.30 2.79 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -35.48 335.46 -6.07 -41.55 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -0.95 Total: 11.63 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -4.41 Total: -19.61 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.68 Total: -32.00 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -1.42 Total: -22.25 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.48 -6.07 -41.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915983069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.891 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds