Wall clock time and date at job start Tue Mar 31 2020 11:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99855 * 2 1 4 4 H 1.48496 * 109.46847 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47197 * 299.99854 * 3 2 1 6 6 H 1.48501 * 109.46658 * 60.00295 * 3 2 1 7 7 C 1.37881 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99600 * 169.57650 * 7 2 1 9 9 C 1.50697 * 119.99816 * 349.57819 * 7 2 1 10 10 C 1.52998 * 115.55347 * 324.15713 * 9 7 2 11 11 O 1.45195 * 109.47292 * 306.72370 * 10 9 7 12 12 C 1.34755 * 117.00001 * 176.83658 * 11 10 9 13 13 O 1.21500 * 119.99788 * 4.02136 * 12 11 10 14 14 C 1.47443 * 119.99668 * 184.01963 * 12 11 10 15 15 C 1.39810 * 120.11547 * 354.34997 * 14 12 11 16 16 C 1.38326 * 119.86194 * 179.97438 * 15 14 12 17 17 N 1.40005 * 119.96077 * 180.02562 * 16 15 14 18 18 C 1.39302 * 120.08054 * 0.02562 * 16 15 14 19 19 F 1.35095 * 119.89006 * 179.97438 * 18 16 15 20 20 C 1.38511 * 120.21962 * 0.02562 * 18 16 15 21 21 F 1.35105 * 119.92779 * 179.97438 * 20 18 16 22 22 C 1.38437 * 120.14485 * 359.70285 * 20 18 16 23 23 F 1.35099 * 120.04361 * 180.27783 * 22 20 18 24 24 C 1.53006 * 117.49842 * 109.83130 * 9 7 2 25 25 C 1.52999 * 117.49634 * 178.48988 * 9 7 2 26 26 H 0.97006 * 120.00050 * 5.03238 * 1 2 3 27 27 H 1.09002 * 109.47152 * 186.71612 * 10 9 7 28 28 H 1.09005 * 109.46711 * 66.72411 * 10 9 7 29 29 H 1.08003 * 120.06712 * 359.95276 * 15 14 12 30 30 H 0.96991 * 119.99968 * 359.97438 * 17 16 15 31 31 H 0.97001 * 119.99997 * 179.97438 * 17 16 15 32 32 H 1.08997 * 117.49694 * 214.99634 * 24 9 7 33 33 H 1.09000 * 117.49714 * 0.02698 * 24 9 7 34 34 H 1.09007 * 117.50276 * 359.97438 * 25 9 7 35 35 H 1.09004 * 117.49710 * 144.97136 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0711 -1.2017 -0.1698 9 6 1.2696 -2.4885 0.2350 10 6 0.1134 -2.4185 1.2345 11 8 0.5855 -1.8430 2.4812 12 6 -0.3298 -1.6499 3.4511 13 8 -1.4753 -2.0207 3.2880 14 6 0.0588 -0.9885 4.7103 15 6 1.3983 -0.6672 4.9495 16 6 1.7570 -0.0463 6.1324 17 7 3.0977 0.2768 6.3739 18 6 0.7859 0.2578 7.0837 19 9 1.1406 0.8638 8.2378 20 6 -0.5419 -0.0599 6.8506 21 9 -1.4789 0.2373 7.7776 22 6 -0.9120 -0.6763 5.6676 23 9 -2.2085 -0.9802 5.4400 24 6 1.1205 -3.4423 -0.9521 25 6 2.0847 -3.7824 0.1872 26 1 -0.4850 0.8369 -0.0737 27 1 -0.2684 -3.4226 1.4193 28 1 -0.6830 -1.7965 0.8258 29 1 2.1515 -0.9037 4.2124 30 1 3.7744 0.0650 5.7121 31 1 3.3498 0.7126 7.2030 32 1 0.1987 -4.0199 -1.0208 33 1 1.5544 -3.1337 -1.9032 34 1 3.1525 -3.6975 -0.0150 35 1 1.7975 -4.5836 0.8682 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922986067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:30 Heat of formation + Delta-G solvation = -158.822345 kcal Electronic energy + Delta-G solvation = -26394.454936 eV Core-core repulsion = 21944.436711 eV Total energy + Delta-G solvation = -4450.018225 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.78302 -49.09877 -48.38436 -39.95085 -38.71258 -36.79411 -35.14657 -34.52037 -32.22741 -31.07270 -28.65219 -26.79571 -25.49000 -24.27300 -23.03328 -21.33561 -20.76063 -19.26127 -18.69285 -18.30817 -18.01736 -16.86091 -16.71599 -16.49354 -16.40237 -15.85372 -15.67681 -15.57397 -15.32944 -14.86447 -14.60612 -14.52659 -14.48796 -13.99723 -13.59963 -13.16277 -12.82603 -12.29625 -12.17932 -12.07386 -11.96784 -11.66960 -11.06610 -10.87947 -10.56316 -10.55132 -10.40986 -10.12295 -9.65128 -9.50410 -9.15379 -9.10654 -8.84518 -8.20244 -7.88642 -6.11883 -4.16747 0.26723 0.76544 2.58337 2.93355 3.19696 3.28290 3.29651 3.31762 3.50439 3.53047 4.00841 4.12273 4.29283 4.48602 4.62734 4.91353 5.00571 5.36731 5.41284 5.60643 5.64721 5.88371 5.98151 6.14105 6.31560 6.39424 6.54280 6.58834 6.71484 6.89384 6.93352 7.19310 7.30864 7.34725 7.38784 7.82642 8.25537 8.43071 8.79065 9.43722 10.89940 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.004757 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.450580 B = 5884.874039 C = 6586.552070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.075 3.925 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.483 4.483 8 H 0.063 0.937 9 C 0.047 3.953 10 C 0.116 3.884 11 O -0.316 6.316 12 C 0.501 3.499 13 O -0.499 6.499 14 C -0.077 4.077 15 C -0.093 4.093 16 C 0.197 3.803 17 N -0.861 5.861 18 C 0.033 3.967 19 F -0.122 7.122 20 C 0.069 3.931 21 F -0.114 7.114 22 C 0.095 3.905 23 F -0.101 7.101 24 C -0.191 4.191 25 C -0.209 4.209 26 H 0.264 0.736 27 H 0.030 0.970 28 H 0.115 0.885 29 H 0.171 0.829 30 H 0.412 0.588 31 H 0.405 0.595 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.559 0.140 12.783 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.128 4.128 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.520 4.520 8 H 0.081 0.919 9 C 0.046 3.954 10 C 0.043 3.957 11 O -0.230 6.230 12 C 0.343 3.657 13 O -0.389 6.389 14 C -0.080 4.080 15 C -0.116 4.116 16 C 0.090 3.910 17 N -0.402 5.402 18 C 0.008 3.992 19 F -0.101 7.101 20 C 0.047 3.953 21 F -0.093 7.093 22 C 0.072 3.928 23 F -0.079 7.079 24 C -0.229 4.229 25 C -0.246 4.246 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.133 0.867 29 H 0.188 0.812 30 H 0.243 0.757 31 H 0.234 0.766 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.991 0.158 12.810 13.418 hybrid contribution 0.284 1.052 0.290 1.127 sum 4.275 1.210 13.099 13.832 Atomic orbital electron populations 1.69787 1.06048 1.27012 1.49036 1.24940 0.94750 0.99132 0.94023 0.86524 0.80166 0.83482 0.77823 1.19606 1.21023 1.20718 1.20439 0.93934 0.88647 1.48966 0.91856 1.18888 0.93984 0.89760 0.92724 1.22899 0.99275 0.94934 0.78566 1.86495 1.38715 1.73659 1.24138 1.20370 0.84073 0.77263 0.83957 1.90852 1.20252 1.47272 1.80501 1.19039 0.92871 1.02635 0.93503 1.20936 0.95881 0.98847 0.95918 1.17327 0.85476 0.95702 0.92486 1.42340 1.03967 1.68960 1.24926 1.16779 0.90629 1.06293 0.85544 1.91491 1.92001 1.80944 1.45669 1.16924 0.85358 1.04764 0.88246 1.91557 1.63160 1.91241 1.63296 1.16989 0.80102 1.02648 0.93016 1.91626 1.31584 1.90481 1.94235 1.22969 0.99415 1.06011 0.94544 1.22977 0.97048 1.01665 1.02907 0.92605 0.95130 0.86718 0.81172 0.75732 0.76565 0.91408 0.89735 0.90290 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.62 10.79 55.43 0.60 -23.03 16 2 C 0.07 1.92 5.19 -17.82 -0.09 1.83 16 3 Si 0.89 19.90 29.55 -169.99 -5.02 14.88 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.48 -12.29 8.75 -34.44 -0.30 -12.59 16 8 H 0.06 1.60 7.84 -52.49 -0.41 1.19 16 9 C 0.05 1.10 2.12 -155.66 -0.33 0.77 16 10 C 0.12 2.73 4.55 37.16 0.17 2.89 16 11 O -0.32 -6.99 9.12 -40.64 -0.37 -7.36 16 12 C 0.50 10.43 7.87 34.48 0.27 10.70 16 13 O -0.50 -11.58 15.14 -19.26 -0.29 -11.87 16 14 C -0.08 -1.30 5.88 -104.95 -0.62 -1.92 16 15 C -0.09 -1.27 9.45 -38.96 -0.37 -1.63 16 16 C 0.20 2.28 6.75 -83.70 -0.57 1.71 16 17 N -0.86 -7.00 9.10 32.44 0.30 -6.71 16 18 C 0.03 0.42 7.32 -39.09 -0.29 0.13 16 19 F -0.12 -1.46 16.53 2.25 0.04 -1.42 16 20 C 0.07 0.99 7.30 -39.41 -0.29 0.70 16 21 F -0.11 -1.67 17.08 2.25 0.04 -1.63 16 22 C 0.10 1.57 7.28 -38.90 -0.28 1.28 16 23 F -0.10 -1.87 15.46 2.25 0.03 -1.83 16 24 C -0.19 -4.08 9.96 -26.69 -0.27 -4.35 16 25 C -0.21 -4.24 9.92 -26.69 -0.26 -4.51 16 26 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 27 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.12 3.02 6.05 -51.93 -0.31 2.70 16 29 H 0.17 2.21 7.62 -52.48 -0.40 1.81 16 30 H 0.41 2.67 8.84 -40.82 -0.36 2.31 16 31 H 0.41 2.66 8.31 -40.82 -0.34 2.32 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -28.92 324.05 -6.09 -35.01 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.07 Total: 4.05 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -3.22 Total: -4.97 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.89 Total: -29.73 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.66 Total: -19.23 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.11 Total: -4.89 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.92 -6.09 -35.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922986067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.815 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds