Wall clock time and date at job start Tue Mar 31 2020 11:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99855 * 2 1 4 4 H 1.48496 * 109.46847 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47197 * 299.99854 * 3 2 1 6 6 H 1.48501 * 109.46658 * 60.00295 * 3 2 1 7 7 C 1.37881 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99600 * 169.57650 * 7 2 1 9 9 C 1.50697 * 119.99816 * 349.57819 * 7 2 1 10 10 C 1.52998 * 115.55347 * 324.15713 * 9 7 2 11 11 O 1.45195 * 109.47292 * 306.72370 * 10 9 7 12 12 C 1.34755 * 117.00001 * 176.83658 * 11 10 9 13 13 O 1.21500 * 119.99788 * 4.02136 * 12 11 10 14 14 C 1.47443 * 119.99668 * 184.01963 * 12 11 10 15 15 C 1.39810 * 120.11547 * 354.34997 * 14 12 11 16 16 C 1.38326 * 119.86194 * 179.97438 * 15 14 12 17 17 N 1.40005 * 119.96077 * 180.02562 * 16 15 14 18 18 C 1.39302 * 120.08054 * 0.02562 * 16 15 14 19 19 F 1.35095 * 119.89006 * 179.97438 * 18 16 15 20 20 C 1.38511 * 120.21962 * 0.02562 * 18 16 15 21 21 F 1.35105 * 119.92779 * 179.97438 * 20 18 16 22 22 C 1.38437 * 120.14485 * 359.70285 * 20 18 16 23 23 F 1.35099 * 120.04361 * 180.27783 * 22 20 18 24 24 C 1.53006 * 117.49842 * 109.83130 * 9 7 2 25 25 C 1.52999 * 117.49634 * 178.48988 * 9 7 2 26 26 H 0.97006 * 120.00050 * 5.03238 * 1 2 3 27 27 H 1.09002 * 109.47152 * 186.71612 * 10 9 7 28 28 H 1.09005 * 109.46711 * 66.72411 * 10 9 7 29 29 H 1.08003 * 120.06712 * 359.95276 * 15 14 12 30 30 H 0.96991 * 119.99968 * 359.97438 * 17 16 15 31 31 H 0.97001 * 119.99997 * 179.97438 * 17 16 15 32 32 H 1.08997 * 117.49694 * 214.99634 * 24 9 7 33 33 H 1.09000 * 117.49714 * 0.02698 * 24 9 7 34 34 H 1.09007 * 117.50276 * 359.97438 * 25 9 7 35 35 H 1.09004 * 117.49710 * 144.97136 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0711 -1.2017 -0.1698 9 6 1.2696 -2.4885 0.2350 10 6 0.1134 -2.4185 1.2345 11 8 0.5855 -1.8430 2.4812 12 6 -0.3298 -1.6499 3.4511 13 8 -1.4753 -2.0207 3.2880 14 6 0.0588 -0.9885 4.7103 15 6 1.3983 -0.6672 4.9495 16 6 1.7570 -0.0463 6.1324 17 7 3.0977 0.2768 6.3739 18 6 0.7859 0.2578 7.0837 19 9 1.1406 0.8638 8.2378 20 6 -0.5419 -0.0599 6.8506 21 9 -1.4789 0.2373 7.7776 22 6 -0.9120 -0.6763 5.6676 23 9 -2.2085 -0.9802 5.4400 24 6 1.1205 -3.4423 -0.9521 25 6 2.0847 -3.7824 0.1872 26 1 -0.4850 0.8369 -0.0737 27 1 -0.2684 -3.4226 1.4193 28 1 -0.6830 -1.7965 0.8258 29 1 2.1515 -0.9037 4.2124 30 1 3.7744 0.0650 5.7121 31 1 3.3498 0.7126 7.2030 32 1 0.1987 -4.0199 -1.0208 33 1 1.5544 -3.1337 -1.9032 34 1 3.1525 -3.6975 -0.0150 35 1 1.7975 -4.5836 0.8682 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922986067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:29 Heat of formation + Delta-G solvation = -174.641972 kcal Electronic energy + Delta-G solvation = -26395.140926 eV Core-core repulsion = 21944.436711 eV Total energy + Delta-G solvation = -4450.704215 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.91329 -50.25140 -49.57936 -41.46780 -39.98612 -38.51576 -36.85150 -35.52816 -34.14505 -32.28587 -29.69230 -28.51444 -27.39159 -25.59716 -24.17827 -22.97930 -22.19545 -21.08634 -19.85078 -19.46764 -19.25163 -18.46327 -18.03007 -17.83950 -17.55603 -17.26023 -17.21757 -16.74017 -16.60930 -16.42571 -16.05810 -15.83695 -15.55662 -15.51468 -15.01555 -14.78621 -14.04276 -13.78608 -13.67934 -13.48777 -13.41016 -13.23206 -12.85712 -12.72594 -12.27367 -12.09499 -11.81981 -11.67025 -11.42738 -11.28054 -11.01416 -10.63727 -10.25765 -10.04153 -8.84167 -8.03636 -6.14322 -0.93080 -0.36942 1.22134 1.43535 1.48119 1.56158 1.58144 2.12657 2.16162 2.45403 2.53930 2.88350 2.99964 3.04182 3.31323 3.38048 3.66351 3.86746 4.17968 4.24321 4.28888 4.42357 4.51079 4.62402 4.75797 4.81669 4.96651 4.98871 5.20293 5.22524 5.43479 5.55821 5.66008 5.85996 6.11485 6.36812 6.72590 6.73069 6.86996 7.48415 8.96242 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.004757 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.450580 B = 5884.874039 C = 6586.552070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.031 3.969 3 Si 0.948 3.052 4 H -0.259 1.259 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.491 4.491 8 H 0.062 0.938 9 C 0.009 3.991 10 C 0.124 3.876 11 O -0.319 6.319 12 C 0.498 3.502 13 O -0.533 6.533 14 C -0.093 4.093 15 C -0.085 4.085 16 C 0.222 3.778 17 N -0.838 5.838 18 C 0.044 3.956 19 F -0.113 7.113 20 C 0.074 3.926 21 F -0.117 7.117 22 C 0.072 3.928 23 F -0.122 7.122 24 C -0.190 4.190 25 C -0.181 4.181 26 H 0.259 0.741 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.180 0.820 30 H 0.424 0.576 31 H 0.418 0.582 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 0.594 14.075 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.169 4.169 3 Si 0.774 3.226 4 H -0.182 1.182 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.528 4.528 8 H 0.080 0.920 9 C 0.009 3.991 10 C 0.050 3.950 11 O -0.233 6.233 12 C 0.343 3.657 13 O -0.425 6.425 14 C -0.096 4.096 15 C -0.108 4.108 16 C 0.111 3.889 17 N -0.379 5.379 18 C 0.018 3.982 19 F -0.091 7.091 20 C 0.052 3.948 21 F -0.095 7.095 22 C 0.049 3.951 23 F -0.100 7.100 24 C -0.228 4.228 25 C -0.218 4.218 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.197 0.803 30 H 0.257 0.743 31 H 0.249 0.751 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.736 0.616 14.118 15.655 hybrid contribution -0.450 0.907 -0.050 1.013 sum 6.287 1.523 14.068 15.484 Atomic orbital electron populations 1.69958 1.07336 1.27153 1.50406 1.25596 0.95295 1.01979 0.93997 0.85656 0.79667 0.79906 0.77399 1.18248 1.21546 1.20579 1.20672 0.93913 0.89725 1.48510 0.92012 1.19015 0.95274 0.90598 0.94211 1.22628 0.98606 0.94505 0.79226 1.86485 1.39031 1.73835 1.23963 1.21040 0.83501 0.76550 0.84648 1.90821 1.21549 1.48884 1.81289 1.18810 0.94459 1.04302 0.92025 1.20940 0.94530 0.98543 0.96786 1.17155 0.86672 0.93951 0.91076 1.42402 1.02600 1.67246 1.25694 1.16664 0.89943 1.05717 0.85844 1.91526 1.91782 1.80626 1.45186 1.16868 0.86001 1.04435 0.87455 1.91549 1.63536 1.91222 1.63183 1.17111 0.79320 1.04561 0.94105 1.91562 1.32978 1.90959 1.94512 1.22979 1.00376 1.05196 0.94212 1.22995 0.97198 0.99817 1.01838 0.93200 0.94447 0.90072 0.80317 0.74267 0.75053 0.90378 0.89984 0.89287 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.86 10.79 21.45 0.23 -49.63 16 2 C 0.03 1.60 5.19 84.66 0.44 2.04 16 3 Si 0.95 40.42 29.55 68.60 2.03 42.44 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.49 -24.75 8.75 25.60 0.22 -24.53 16 8 H 0.06 3.05 7.84 -2.91 -0.02 3.03 16 9 C 0.01 0.44 2.12 -52.93 -0.11 0.33 16 10 C 0.12 5.92 4.55 71.98 0.33 6.24 16 11 O -0.32 -14.28 9.12 -56.66 -0.52 -14.79 16 12 C 0.50 21.31 7.87 70.25 0.55 21.86 16 13 O -0.53 -25.93 15.14 19.84 0.30 -25.63 16 14 C -0.09 -3.13 5.88 -20.08 -0.12 -3.25 16 15 C -0.08 -2.16 9.45 22.67 0.21 -1.95 16 16 C 0.22 4.43 6.75 38.11 0.26 4.69 16 17 N -0.84 -10.07 9.10 -51.28 -0.47 -10.54 16 18 C 0.04 1.00 7.32 22.59 0.17 1.17 16 19 F -0.11 -2.31 16.53 44.97 0.74 -1.56 16 20 C 0.07 2.06 7.30 22.38 0.16 2.22 16 21 F -0.12 -3.31 17.08 44.97 0.77 -2.55 16 22 C 0.07 2.40 7.28 22.71 0.17 2.56 16 23 F -0.12 -4.70 15.46 44.97 0.70 -4.01 16 24 C -0.19 -7.90 9.96 30.62 0.30 -7.60 16 25 C -0.18 -7.00 9.92 30.62 0.30 -6.70 16 26 H 0.26 13.81 8.32 -92.70 -0.77 13.04 16 27 H 0.04 1.68 8.08 -2.39 -0.02 1.66 16 28 H 0.08 4.45 6.05 -2.38 -0.01 4.44 16 29 H 0.18 4.25 7.62 -2.91 -0.02 4.22 16 30 H 0.42 3.62 8.84 -92.71 -0.82 2.80 16 31 H 0.42 3.54 8.31 -92.71 -0.77 2.77 16 32 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 35 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 Total: -1.00 -63.29 324.05 6.27 -57.02 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -0.40 Total: 12.17 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 2.89 Total: -2.91 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.24 Total: -60.17 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -0.22 Total: -40.43 kcal Atomic # 9 Polarization: -10.33 SS G_CDS: 2.21 Total: -8.12 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.44 kcal Total: -63.29 6.27 -57.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922986067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.624 kcal (2) G-P(sol) polarization free energy of solvation -63.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds