Wall clock time and date at job start Tue Mar 31 2020 11:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86808 * 119.99921 * 2 1 4 4 H 1.48496 * 109.46986 * 269.99651 * 3 2 1 5 5 H 1.48496 * 109.46897 * 29.99712 * 3 2 1 6 6 H 1.48502 * 109.46774 * 149.99805 * 3 2 1 7 7 C 1.38795 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00206 * 359.97438 * 7 2 1 9 9 S 1.76206 * 119.99776 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99962 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47329 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99460 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99912 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99489 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.46684 * 179.97438 * 14 13 11 16 16 N 1.46898 * 109.46764 * 180.02562 * 15 14 13 17 17 C 1.46906 * 110.99888 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46897 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.46953 * 180.02562 * 18 17 16 20 20 C 1.35140 * 127.24892 * 89.70567 * 19 18 17 21 21 C 1.37809 * 114.76176 * 179.86588 * 20 19 18 22 22 N 1.30081 * 116.87775 * 0.45188 * 21 20 19 23 23 S 1.69602 * 107.15397 * 359.75915 * 22 21 20 24 24 H 0.97008 * 119.99799 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47124 * 59.99798 * 10 9 7 26 26 H 1.09000 * 109.47317 * 299.99900 * 10 9 7 27 27 H 0.96999 * 120.00193 * 359.97438 * 13 11 10 28 28 H 1.09004 * 109.47089 * 60.00273 * 14 13 11 29 29 H 1.08997 * 109.47466 * 299.99640 * 14 13 11 30 30 H 1.08995 * 109.47210 * 60.00066 * 15 14 13 31 31 H 1.08997 * 109.46954 * 300.00050 * 15 14 13 32 32 H 1.00902 * 111.00533 * 56.04323 * 16 15 14 33 33 H 1.09000 * 109.47033 * 300.00113 * 17 16 15 34 34 H 1.09001 * 109.46544 * 60.00058 * 17 16 15 35 35 H 1.09000 * 109.47486 * 299.99976 * 18 17 16 36 36 H 1.09001 * 109.47362 * 60.00699 * 18 17 16 37 37 H 1.07996 * 122.61758 * 0.04328 * 20 19 18 38 38 H 1.07997 * 121.55768 * 180.20461 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2325 0.0021 12 8 6.3440 -2.2962 0.0025 13 7 6.0457 -4.4947 0.0016 14 6 7.4907 -4.7357 0.0021 15 6 7.7563 -6.2425 0.0020 16 7 9.2053 -6.4842 0.0032 17 6 9.4989 -7.9236 0.0038 18 6 11.0142 -8.1350 0.0043 19 6 11.3155 -9.6116 0.0043 20 6 11.4740 -10.4140 -1.0715 21 6 11.7472 -11.7315 -0.7736 22 7 11.8110 -12.0485 0.4863 23 16 11.5224 -10.6323 1.3737 24 1 -0.4850 0.8401 0.0004 25 1 3.6440 -3.4313 -0.8893 26 1 3.6434 -3.4318 0.8907 27 1 5.4290 -5.2435 0.0009 28 1 7.9332 -4.2892 0.8927 29 1 7.9341 -4.2882 -0.8874 30 1 7.3138 -6.6894 -0.8882 31 1 7.3130 -6.6897 0.8918 32 1 9.6480 -6.0249 0.7850 33 1 9.0674 -8.3821 0.8935 34 1 9.0687 -8.3824 -0.8865 35 1 11.4454 -7.6765 -0.8856 36 1 11.4448 -7.6761 0.8944 37 1 11.3957 -10.0506 -2.0855 38 1 11.8972 -12.4672 -1.5500 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:27 Heat of formation + Delta-G solvation = -4.532363 kcal Electronic energy + Delta-G solvation = -19521.408817 eV Core-core repulsion = 16230.427422 eV Total energy + Delta-G solvation = -3290.981395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.42263 -39.29411 -37.41807 -34.98436 -33.30811 -32.44825 -30.59417 -29.25346 -27.20144 -25.62030 -24.80218 -22.72637 -22.47073 -20.50575 -20.35897 -18.28426 -17.88673 -16.75291 -16.52269 -16.19633 -16.10332 -15.41004 -15.02675 -14.89861 -14.74878 -14.45663 -14.18402 -13.77895 -13.61287 -13.31604 -13.05095 -12.81581 -12.80508 -12.34814 -12.18945 -11.83842 -11.62806 -11.30463 -11.27489 -11.01477 -10.95425 -10.62154 -9.98809 -9.86783 -9.57418 -9.25443 -9.05108 -9.01389 -8.98811 -8.51442 -6.93080 -6.29894 -4.01854 0.17368 0.97528 1.38598 1.96668 2.70365 2.94962 3.16327 3.32670 3.49773 3.52768 3.80193 4.20682 4.32405 4.33735 4.43560 4.59685 4.65987 4.70916 4.74541 4.82948 4.97688 5.09239 5.10783 5.15909 5.28671 5.32550 5.40955 5.45788 5.64780 5.75416 5.78339 5.99279 6.07588 6.34731 6.49373 6.80028 7.55690 7.93077 8.40452 8.45706 9.16302 10.79275 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.053343 B = 0.001551 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.778936 B =18044.651401 C =18245.759514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.123 3.877 15 C 0.050 3.950 16 N -0.686 5.686 17 C 0.066 3.934 18 C -0.046 4.046 19 C -0.160 4.160 20 C -0.207 4.207 21 C 0.091 3.909 22 N -0.463 5.463 23 S 0.250 5.750 24 H 0.271 0.729 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.399 0.601 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.346 0.654 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.158 0.842 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.350 -22.961 -0.379 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.392 5.392 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.317 5.317 17 C -0.064 4.064 18 C -0.086 4.086 19 C -0.291 4.291 20 C -0.242 4.242 21 C -0.106 4.106 22 N -0.283 5.283 23 S 0.401 5.599 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.233 0.767 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.164 0.836 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.176 0.824 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 24.717 -22.125 0.972 33.187 hybrid contribution -1.459 -0.504 -1.025 1.853 sum 23.258 -22.629 -0.053 32.450 Atomic orbital electron populations 1.69941 1.05919 1.27772 1.48037 1.24712 0.94450 0.98969 0.93149 0.86732 0.81890 0.83262 0.79955 1.19187 1.19929 1.15923 1.22320 0.88270 0.97551 1.58846 0.89384 1.84799 1.09282 1.00019 1.97430 1.23277 0.93923 1.04438 1.05838 1.20270 0.90613 0.82170 0.75234 1.90707 1.58788 1.42155 1.47567 1.45853 1.07292 1.08177 1.77927 1.21146 0.81538 0.94421 1.03077 1.22098 0.88395 0.95959 1.01545 1.60282 1.10287 1.10600 1.50555 1.21932 0.94228 0.88666 1.01608 1.20083 0.96634 0.86937 1.04928 1.25460 1.03452 1.01712 0.98476 1.21389 1.08284 0.92869 1.01629 1.22892 0.97304 0.96474 0.93947 1.76835 1.23929 1.19376 1.08165 1.84210 1.64344 0.96813 1.14496 0.91936 0.88440 0.88456 0.76709 0.91706 0.90555 0.90096 0.94300 0.83590 0.94621 0.90213 0.88250 0.89895 0.82406 0.79895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.44 13.97 55.49 0.78 -25.66 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.69 27.74 -169.99 -4.72 16.97 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 7 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 11 C 0.53 9.19 7.85 -10.98 -0.09 9.11 16 12 O -0.52 -11.05 15.86 5.56 0.09 -10.96 16 13 N -0.74 -8.79 5.56 -60.29 -0.33 -9.12 16 14 C 0.12 1.25 5.93 -4.04 -0.02 1.23 16 15 C 0.05 0.34 5.80 -3.82 -0.02 0.32 16 16 N -0.69 -4.24 6.50 -113.78 -0.74 -4.98 16 17 C 0.07 0.34 5.67 -3.82 -0.02 0.32 16 18 C -0.05 -0.20 6.05 -27.88 -0.17 -0.37 16 19 C -0.16 -0.89 5.85 -35.41 -0.21 -1.10 16 20 C -0.21 -1.06 10.17 -40.84 -0.42 -1.48 16 21 C 0.09 0.53 11.27 -18.45 -0.21 0.33 16 22 N -0.46 -3.89 12.09 28.86 0.35 -3.54 16 23 S 0.25 1.72 23.72 -107.50 -2.55 -0.83 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 26 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 27 H 0.40 3.55 8.47 -40.82 -0.35 3.21 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.35 1.85 8.73 -39.29 -0.34 1.51 16 33 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.16 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.18 0.53 8.06 -52.49 -0.42 0.10 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -35.10 356.30 -9.81 -44.91 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.34 Total: -0.86 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.72 Total: -5.73 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.05 Total: -43.30 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -4.54 Total: -6.39 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.10 -9.81 -44.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.375 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds