Wall clock time and date at job start Tue Mar 31 2020 11:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86796 * 120.00143 * 2 1 4 4 H 1.48506 * 109.47449 * 240.00367 * 3 2 1 5 5 H 1.48505 * 109.47037 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47108 * 120.00260 * 3 2 1 7 7 C 1.39933 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99568 * 196.71597 * 7 2 1 9 9 C 1.41405 * 119.99922 * 16.71152 * 7 2 1 10 10 C 1.40787 * 120.20815 * 205.25883 * 9 7 2 11 11 C 1.37646 * 119.89022 * 179.97438 * 10 9 7 12 12 C 1.38519 * 120.32285 * 0.02562 * 11 10 9 13 13 C 1.39271 * 120.43094 * 359.96614 * 12 11 10 14 14 N 1.39861 * 119.95373 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99893 * 145.60634 * 14 13 12 16 16 O 1.21590 * 120.00065 * 354.88308 * 15 14 13 17 17 C 1.47581 * 119.99595 * 174.88034 * 15 14 13 18 18 C 1.39722 * 120.05475 * 180.02562 * 17 15 14 19 19 C 1.38231 * 119.94036 * 179.97438 * 18 17 15 20 20 O 1.35998 * 119.96984 * 180.02562 * 19 18 17 21 21 C 1.39232 * 120.05655 * 0.27079 * 19 18 17 22 22 O 1.35897 * 119.94046 * 179.70426 * 21 19 18 23 23 C 1.39231 * 120.11524 * 359.45573 * 21 19 18 24 24 O 1.36006 * 119.97292 * 180.26930 * 23 21 19 25 25 C 1.38223 * 120.06003 * 0.54483 * 23 21 19 26 26 C 1.38305 * 120.09786 * 0.26877 * 13 12 11 27 27 H 0.96998 * 119.99770 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.05309 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.83566 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.78728 * 179.97438 * 12 11 10 31 31 H 0.96999 * 120.00154 * 325.61440 * 14 13 12 32 32 H 1.07992 * 120.02968 * 0.02562 * 18 17 15 33 33 H 0.96704 * 114.00331 * 89.99929 * 20 19 18 34 34 H 0.96706 * 113.99410 * 90.00239 * 22 21 19 35 35 H 0.96694 * 114.00439 * 270.27663 * 24 23 21 36 36 H 1.08000 * 120.03356 * 179.74473 * 25 23 21 37 37 H 1.07994 * 120.16124 * 179.73233 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6964 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0962 1.6963 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0537 -1.2317 0.2685 9 6 1.3457 -2.4104 -0.3532 10 6 1.8174 -3.6476 0.1253 11 6 1.1674 -4.8102 -0.2217 12 6 0.0508 -4.7696 -1.0404 13 6 -0.4275 -3.5531 -1.5212 14 7 -1.5554 -3.5237 -2.3476 15 6 -2.4202 -2.4928 -2.2710 16 8 -2.2713 -1.6362 -1.4211 17 6 -3.5479 -2.4037 -3.2189 18 6 -4.4448 -1.3353 -3.1410 19 6 -5.4999 -1.2539 -4.0303 20 8 -6.3730 -0.2139 -3.9553 21 6 -5.6724 -2.2385 -4.9995 22 8 -6.7140 -2.1593 -5.8689 23 6 -4.7768 -3.3012 -5.0830 24 8 -4.9450 -4.2584 -6.0344 25 6 -3.7201 -3.3874 -4.1961 26 6 0.2149 -2.3746 -1.1876 27 1 -0.4850 0.8400 0.0004 28 1 2.6874 -3.6843 0.7642 29 1 1.5298 -5.7588 0.1462 30 1 -0.4523 -5.6872 -1.3076 31 1 -1.7154 -4.2453 -2.9758 32 1 -4.3134 -0.5732 -2.3871 33 1 -6.1205 0.5511 -4.4903 34 1 -6.5129 -1.6733 -6.6804 35 1 -5.4985 -4.9997 -5.7531 36 1 -3.0280 -4.2141 -4.2586 37 1 -0.1525 -1.4312 -1.5633 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148586406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:10 Heat of formation + Delta-G solvation = -105.706993 kcal Electronic energy + Delta-G solvation = -25165.903360 eV Core-core repulsion = 21260.045130 eV Total energy + Delta-G solvation = -3905.858230 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83532 -39.47492 -38.08289 -37.31696 -36.83074 -35.64331 -34.35093 -33.19071 -30.12194 -29.61901 -29.49708 -27.94881 -25.26749 -24.02906 -22.97474 -21.62946 -20.86135 -19.87293 -19.22193 -18.39808 -17.77231 -17.66310 -16.95391 -16.49468 -15.72533 -15.50368 -15.03662 -14.87497 -14.76302 -14.64529 -14.26473 -13.94677 -13.54829 -13.07623 -12.77622 -12.63454 -12.29984 -12.08186 -11.76738 -11.56140 -11.46088 -11.19019 -11.06391 -10.74709 -10.56568 -10.41846 -10.06779 -9.74474 -9.36535 -9.01037 -8.99624 -8.94194 -8.83077 -7.36914 -6.95801 -6.56646 -4.29175 0.48377 0.83442 2.55709 2.85904 3.04503 3.11631 3.13728 3.24688 3.40868 3.69932 3.78817 3.85443 3.99756 4.11256 4.69764 4.75815 4.88301 4.96514 5.29943 5.35513 5.71117 5.78296 5.90121 6.02939 6.18133 6.22529 6.43721 6.70621 6.96446 7.03578 7.04974 7.14167 7.26029 7.33290 7.50634 7.59893 7.76601 7.88585 8.08740 8.24085 8.37187 8.56831 8.84532 8.96291 9.00475 10.29315 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.003795 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.892677 B = 7376.924021 C = 8890.575929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.120 3.880 10 C -0.238 4.238 11 C -0.079 4.079 12 C -0.267 4.267 13 C 0.142 3.858 14 N -0.664 5.664 15 C 0.534 3.466 16 O -0.472 6.472 17 C -0.094 4.094 18 C -0.079 4.079 19 C 0.089 3.911 20 O -0.483 6.483 21 C 0.071 3.929 22 O -0.481 6.481 23 C 0.089 3.911 24 O -0.488 6.488 25 C -0.109 4.109 26 C -0.157 4.157 27 H 0.282 0.718 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.394 0.606 32 H 0.153 0.847 33 H 0.390 0.610 34 H 0.390 0.610 35 H 0.394 0.606 36 H 0.141 0.859 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.629 -2.825 -12.045 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.148 4.148 3 Si 0.727 3.273 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.117 3.883 10 C -0.258 4.258 11 C -0.098 4.098 12 C -0.289 4.289 13 C 0.050 3.950 14 N -0.309 5.309 15 C 0.320 3.680 16 O -0.344 6.344 17 C -0.098 4.098 18 C -0.099 4.099 19 C 0.043 3.957 20 O -0.292 6.292 21 C 0.024 3.976 22 O -0.291 6.291 23 C 0.044 3.956 24 O -0.299 6.299 25 C -0.129 4.129 26 C -0.178 4.178 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.229 0.771 32 H 0.171 0.829 33 H 0.246 0.754 34 H 0.246 0.754 35 H 0.251 0.749 36 H 0.159 0.841 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.025 -2.328 -10.958 15.718 hybrid contribution 0.324 0.559 -0.752 0.992 sum -10.701 -1.769 -11.711 15.962 Atomic orbital electron populations 1.69901 1.06902 1.29280 1.32245 1.25961 0.94820 1.01061 0.92981 0.86467 0.80189 0.80792 0.79843 1.18969 1.20398 1.19086 1.19502 0.97663 0.91090 1.41127 0.90474 1.17469 0.90569 0.92141 0.88111 1.20989 1.04205 0.92957 1.07608 1.20285 0.95435 0.96564 0.97503 1.19999 1.03653 0.94467 1.10740 1.17563 0.86968 0.95155 0.95303 1.43285 1.23719 1.23773 1.40090 1.18079 0.82083 0.83203 0.84672 1.91035 1.72028 1.37752 1.33604 1.19955 0.97114 0.95728 0.97016 1.21573 0.91200 0.98474 0.98615 1.18448 0.90908 0.90126 0.96188 1.84930 1.47112 1.25747 1.71447 1.19317 0.88888 0.96158 0.93192 1.84816 1.33811 1.78356 1.32109 1.18426 0.94101 0.91839 0.91249 1.84804 1.73522 1.33655 1.37886 1.21598 0.98317 0.99539 0.93410 1.21351 0.98212 0.96318 1.01928 0.90719 0.88977 0.89128 0.89389 0.77099 0.82921 0.75409 0.75393 0.74949 0.84134 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.53 10.96 55.55 0.61 -19.92 16 2 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 3 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.56 9.05 -37.74 -0.34 -12.90 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.12 3.27 5.56 -106.85 -0.59 2.67 16 10 C -0.24 -5.89 9.79 -38.83 -0.38 -6.27 16 11 C -0.08 -1.77 10.02 -39.69 -0.40 -2.17 16 12 C -0.27 -5.85 9.97 -39.09 -0.39 -6.24 16 13 C 0.14 3.28 6.25 -83.79 -0.52 2.76 16 14 N -0.66 -12.39 5.28 -10.84 -0.06 -12.45 16 15 C 0.53 10.29 7.49 -12.45 -0.09 10.20 16 16 O -0.47 -11.26 14.10 5.29 0.07 -11.19 16 17 C -0.09 -1.40 5.87 -104.98 -0.62 -2.01 16 18 C -0.08 -1.11 9.52 -39.03 -0.37 -1.49 16 19 C 0.09 1.08 6.70 -39.21 -0.26 0.81 16 20 O -0.48 -5.21 13.28 -34.48 -0.46 -5.66 16 21 C 0.07 0.80 6.73 -38.84 -0.26 0.54 16 22 O -0.48 -4.75 13.04 -44.81 -0.58 -5.33 16 23 C 0.09 0.99 6.70 -39.22 -0.26 0.72 16 24 O -0.49 -4.57 13.28 -34.50 -0.46 -5.03 16 25 C -0.11 -1.30 9.46 -39.03 -0.37 -1.67 16 26 C -0.16 -4.16 7.28 -38.68 -0.28 -4.45 16 27 H 0.28 7.09 8.30 -40.82 -0.34 6.75 16 28 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.39 5.69 6.85 -40.82 -0.28 5.41 16 32 H 0.15 2.29 7.64 -52.49 -0.40 1.89 16 33 H 0.39 2.19 9.07 45.56 0.41 2.61 16 34 H 0.39 2.07 9.06 45.56 0.41 2.49 16 35 H 0.39 2.06 9.06 45.56 0.41 2.47 16 36 H 0.14 1.40 6.40 -52.49 -0.34 1.07 16 37 H 0.14 3.79 4.63 -52.49 -0.24 3.55 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -34.83 329.49 -7.01 -41.84 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.84 Total: 16.42 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -5.24 Total: -17.71 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.55 Total: -32.37 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.43 Total: -27.21 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.83 -7.01 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148586406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.863 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds