Wall clock time and date at job start Tue Mar 31 2020 11:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86796 * 120.00143 * 2 1 4 4 H 1.48506 * 109.47449 * 240.00367 * 3 2 1 5 5 H 1.48505 * 109.47037 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47108 * 120.00260 * 3 2 1 7 7 C 1.39933 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99568 * 196.71597 * 7 2 1 9 9 C 1.41405 * 119.99922 * 16.71152 * 7 2 1 10 10 C 1.40787 * 120.20815 * 205.25883 * 9 7 2 11 11 C 1.37646 * 119.89022 * 179.97438 * 10 9 7 12 12 C 1.38519 * 120.32285 * 0.02562 * 11 10 9 13 13 C 1.39271 * 120.43094 * 359.96614 * 12 11 10 14 14 N 1.39861 * 119.95373 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99893 * 145.60634 * 14 13 12 16 16 O 1.21590 * 120.00065 * 354.88308 * 15 14 13 17 17 C 1.47581 * 119.99595 * 174.88034 * 15 14 13 18 18 C 1.39722 * 120.05475 * 180.02562 * 17 15 14 19 19 C 1.38231 * 119.94036 * 179.97438 * 18 17 15 20 20 O 1.35998 * 119.96984 * 180.02562 * 19 18 17 21 21 C 1.39232 * 120.05655 * 0.27079 * 19 18 17 22 22 O 1.35897 * 119.94046 * 179.70426 * 21 19 18 23 23 C 1.39231 * 120.11524 * 359.45573 * 21 19 18 24 24 O 1.36006 * 119.97292 * 180.26930 * 23 21 19 25 25 C 1.38223 * 120.06003 * 0.54483 * 23 21 19 26 26 C 1.38305 * 120.09786 * 0.26877 * 13 12 11 27 27 H 0.96998 * 119.99770 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.05309 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.83566 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.78728 * 179.97438 * 12 11 10 31 31 H 0.96999 * 120.00154 * 325.61440 * 14 13 12 32 32 H 1.07992 * 120.02968 * 0.02562 * 18 17 15 33 33 H 0.96704 * 114.00331 * 89.99929 * 20 19 18 34 34 H 0.96706 * 113.99410 * 90.00239 * 22 21 19 35 35 H 0.96694 * 114.00439 * 270.27663 * 24 23 21 36 36 H 1.08000 * 120.03356 * 179.74473 * 25 23 21 37 37 H 1.07994 * 120.16124 * 179.73233 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6964 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0962 1.6963 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0537 -1.2317 0.2685 9 6 1.3457 -2.4104 -0.3532 10 6 1.8174 -3.6476 0.1253 11 6 1.1674 -4.8102 -0.2217 12 6 0.0508 -4.7696 -1.0404 13 6 -0.4275 -3.5531 -1.5212 14 7 -1.5554 -3.5237 -2.3476 15 6 -2.4202 -2.4928 -2.2710 16 8 -2.2713 -1.6362 -1.4211 17 6 -3.5479 -2.4037 -3.2189 18 6 -4.4448 -1.3353 -3.1410 19 6 -5.4999 -1.2539 -4.0303 20 8 -6.3730 -0.2139 -3.9553 21 6 -5.6724 -2.2385 -4.9995 22 8 -6.7140 -2.1593 -5.8689 23 6 -4.7768 -3.3012 -5.0830 24 8 -4.9450 -4.2584 -6.0344 25 6 -3.7201 -3.3874 -4.1961 26 6 0.2149 -2.3746 -1.1876 27 1 -0.4850 0.8400 0.0004 28 1 2.6874 -3.6843 0.7642 29 1 1.5298 -5.7588 0.1462 30 1 -0.4523 -5.6872 -1.3076 31 1 -1.7154 -4.2453 -2.9758 32 1 -4.3134 -0.5732 -2.3871 33 1 -6.1205 0.5511 -4.4903 34 1 -6.5129 -1.6733 -6.6804 35 1 -5.4985 -4.9997 -5.7531 36 1 -3.0280 -4.2141 -4.2586 37 1 -0.1525 -1.4312 -1.5633 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148586406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:09 Heat of formation + Delta-G solvation = -134.229798 kcal Electronic energy + Delta-G solvation = -25167.140201 eV Core-core repulsion = 21260.045130 eV Total energy + Delta-G solvation = -3907.095071 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.88670 -40.88260 -38.97308 -38.88814 -37.74199 -36.64390 -36.10723 -34.99989 -31.54766 -31.20897 -30.55698 -29.50476 -27.19514 -25.26139 -23.91737 -23.21847 -22.51197 -21.34712 -20.30411 -19.55321 -19.20419 -18.59460 -18.06934 -17.87029 -17.21432 -16.62112 -16.52728 -16.41400 -16.00477 -15.95479 -15.55012 -15.22157 -14.86343 -14.61699 -14.48179 -14.01961 -13.62672 -13.45424 -13.05543 -12.90275 -12.83907 -12.74850 -12.58741 -12.34097 -12.24969 -11.87867 -11.55744 -11.23122 -11.14486 -10.84000 -10.67338 -9.88609 -9.80622 -9.28658 -8.78154 -8.44446 -6.30242 -0.53773 -0.07823 0.90691 1.12545 1.36075 1.47693 1.51090 1.69160 2.11047 2.21996 2.49392 2.71619 2.82359 3.05709 3.25067 3.64481 3.79228 3.84414 3.96169 4.41302 4.47792 4.52011 4.71891 4.79421 4.90032 4.94958 5.02786 5.15973 5.22428 5.27959 5.31470 5.42942 5.84243 5.90638 6.03183 6.17740 6.43927 6.46451 6.63498 6.66889 6.70534 6.83242 6.99284 7.07388 7.32701 8.39424 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.003795 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.892677 B = 7376.924021 C = 8890.575929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.030 3.970 3 Si 0.976 3.024 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.505 4.505 8 H 0.076 0.924 9 C 0.086 3.914 10 C -0.257 4.257 11 C -0.078 4.078 12 C -0.257 4.257 13 C 0.141 3.859 14 N -0.653 5.653 15 C 0.532 3.468 16 O -0.528 6.528 17 C -0.110 4.110 18 C -0.093 4.093 19 C 0.093 3.907 20 O -0.492 6.492 21 C 0.085 3.915 22 O -0.485 6.485 23 C 0.101 3.899 24 O -0.488 6.488 25 C -0.098 4.098 26 C -0.187 4.187 27 H 0.282 0.718 28 H 0.098 0.902 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.417 0.583 32 H 0.131 0.869 33 H 0.412 0.588 34 H 0.412 0.588 35 H 0.415 0.585 36 H 0.162 0.838 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.749 -4.550 -14.070 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.187 4.187 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.534 4.534 8 H 0.094 0.906 9 C 0.083 3.917 10 C -0.277 4.277 11 C -0.096 4.096 12 C -0.278 4.278 13 C 0.048 3.952 14 N -0.300 5.300 15 C 0.321 3.679 16 O -0.404 6.404 17 C -0.114 4.114 18 C -0.113 4.113 19 C 0.047 3.953 20 O -0.306 6.306 21 C 0.038 3.962 22 O -0.298 6.298 23 C 0.055 3.945 24 O -0.302 6.302 25 C -0.117 4.117 26 C -0.209 4.209 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.256 0.744 32 H 0.149 0.851 33 H 0.272 0.728 34 H 0.273 0.727 35 H 0.275 0.725 36 H 0.179 0.821 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.162 -4.096 -13.042 18.297 hybrid contribution 0.498 0.922 -0.262 1.080 sum -11.664 -3.174 -13.304 17.976 Atomic orbital electron populations 1.70027 1.08478 1.29970 1.33648 1.26804 0.95509 1.04409 0.92002 0.85354 0.78761 0.76078 0.80106 1.18414 1.19687 1.18169 1.19769 0.97910 0.92405 1.43337 0.90564 1.17870 0.91490 0.93352 0.88973 1.21217 1.04958 0.93281 1.08198 1.20730 0.94962 0.97286 0.96670 1.20485 1.03036 0.95330 1.08937 1.17728 0.87580 0.94730 0.95151 1.43157 1.22337 1.24600 1.39868 1.18762 0.82649 0.82045 0.84491 1.91016 1.73580 1.39603 1.36165 1.19499 0.96308 0.97749 0.97822 1.21464 0.92438 0.98214 0.99149 1.18335 0.90237 0.90868 0.95843 1.84870 1.46818 1.26502 1.72360 1.19304 0.88604 0.95445 0.92837 1.84762 1.33280 1.78786 1.33013 1.18304 0.93353 0.92065 0.90736 1.84771 1.74122 1.34064 1.37199 1.21674 0.98862 0.98914 0.92299 1.21259 0.99296 0.96785 1.03537 0.90806 0.88426 0.85199 0.85261 0.74438 0.85146 0.72829 0.72742 0.72460 0.82065 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -45.74 10.96 21.82 0.24 -45.50 16 2 C 0.03 1.59 5.15 85.25 0.44 2.03 16 3 Si 0.98 40.78 29.59 68.60 2.03 42.81 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.50 -28.72 9.05 23.46 0.21 -28.51 16 8 H 0.08 4.14 7.90 -2.91 -0.02 4.11 16 9 C 0.09 4.88 5.56 -21.31 -0.12 4.76 16 10 C -0.26 -12.89 9.79 22.75 0.22 -12.66 16 11 C -0.08 -3.35 10.02 22.20 0.22 -3.12 16 12 C -0.26 -10.67 9.97 22.59 0.23 -10.44 16 13 C 0.14 6.54 6.25 38.12 0.24 6.78 16 14 N -0.65 -24.06 5.28 -306.46 -1.62 -25.68 16 15 C 0.53 21.09 7.49 86.71 0.65 21.74 16 16 O -0.53 -26.83 14.10 -4.00 -0.06 -26.88 16 17 C -0.11 -3.25 5.87 -20.10 -0.12 -3.36 16 18 C -0.09 -2.67 9.52 22.63 0.22 -2.46 16 19 C 0.09 2.14 6.70 22.51 0.15 2.29 16 20 O -0.49 -9.97 13.28 -79.43 -1.05 -11.03 16 21 C 0.08 1.68 6.73 22.75 0.15 1.84 16 22 O -0.49 -7.85 13.04 -68.11 -0.89 -8.74 16 23 C 0.10 1.91 6.70 22.51 0.15 2.06 16 24 O -0.49 -7.10 13.28 -79.52 -1.06 -8.15 16 25 C -0.10 -2.11 9.46 22.62 0.21 -1.90 16 26 C -0.19 -10.38 7.28 22.86 0.17 -10.22 16 27 H 0.28 15.11 8.30 -92.71 -0.77 14.35 16 28 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 29 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 30 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 31 H 0.42 11.11 6.85 -92.71 -0.64 10.47 16 32 H 0.13 4.26 7.64 -2.91 -0.02 4.24 16 33 H 0.41 4.01 9.07 -74.05 -0.67 3.33 16 34 H 0.41 2.81 9.06 -74.05 -0.67 2.14 16 35 H 0.42 2.48 9.06 -74.06 -0.67 1.80 16 36 H 0.16 2.67 6.40 -2.91 -0.02 2.65 16 37 H 0.11 6.60 4.63 -2.91 -0.01 6.59 16 Total: -1.00 -80.08 329.49 -0.82 -80.91 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: -1.45 Total: 33.44 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 3.02 Total: -31.17 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -1.38 Total: -71.18 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -3.06 Total: -54.80 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -80.08 -0.82 -80.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148586406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.321 kcal (2) G-P(sol) polarization free energy of solvation -80.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds