Wall clock time and date at job start Tue Mar 31 2020 11:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99860 * 2 1 4 4 H 1.48507 * 109.47178 * 270.00186 * 3 2 1 5 5 H 1.48500 * 109.47191 * 30.00314 * 3 2 1 6 6 H 1.48500 * 109.47113 * 150.00354 * 3 2 1 7 7 C 1.38798 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00204 * 359.97438 * 7 2 1 9 9 S 1.76204 * 120.00021 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99969 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46934 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00056 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99923 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00072 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47301 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47071 * 179.97438 * 15 14 13 17 17 N 1.46904 * 109.46950 * 180.02562 * 16 15 14 18 18 C 1.46899 * 111.00029 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.47107 * 179.97438 * 18 17 16 20 20 C 1.35133 * 127.25000 * 89.70709 * 19 18 17 21 21 C 1.37811 * 114.76118 * 179.86903 * 20 19 18 22 22 N 1.30078 * 116.88114 * 0.44083 * 21 20 19 23 23 S 1.69604 * 107.15012 * 359.76528 * 22 21 20 24 24 H 0.96997 * 120.00428 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47204 * 59.99745 * 10 9 7 26 26 H 1.09003 * 109.46966 * 299.99448 * 10 9 7 27 27 H 0.97006 * 119.99687 * 359.97438 * 13 11 10 28 28 H 1.08995 * 109.47396 * 59.99791 * 14 13 11 29 29 H 1.09003 * 109.46682 * 299.99550 * 14 13 11 30 30 H 1.09005 * 109.47127 * 59.99423 * 15 14 13 31 31 H 1.09004 * 109.47149 * 299.99926 * 15 14 13 32 32 H 1.08995 * 109.47319 * 59.99998 * 16 15 14 33 33 H 1.09003 * 109.47435 * 299.99322 * 16 15 14 34 34 H 1.00902 * 111.00190 * 56.03777 * 17 16 15 35 35 H 1.09002 * 109.47043 * 299.99792 * 18 17 16 36 36 H 1.09001 * 109.47354 * 59.99854 * 18 17 16 37 37 H 1.08005 * 122.62203 * 0.03677 * 20 19 18 38 38 H 1.08005 * 121.55893 * 180.21071 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2020 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5732 -3.2324 -0.0021 12 8 6.3441 -2.2962 -0.0035 13 7 6.0459 -4.4945 -0.0016 14 6 7.4908 -4.7356 -0.0021 15 6 7.7566 -6.2423 -0.0007 16 6 9.2657 -6.4940 -0.0020 17 7 9.5209 -7.9407 -0.0012 18 6 10.9629 -8.2210 -0.0018 19 6 11.1849 -9.7116 -0.0004 20 6 11.2994 -10.5225 -1.0753 21 6 11.5021 -11.8524 -0.7760 22 7 11.5503 -12.1709 0.4842 23 16 11.3386 -10.7402 1.3702 24 1 -0.4850 0.8400 0.0004 25 1 3.6434 -3.4317 -0.8906 26 1 3.6442 -3.4313 0.8894 27 1 5.4292 -5.2434 -0.0001 28 1 7.9342 -4.2880 0.8873 29 1 7.9333 -4.2891 -0.8927 30 1 7.3131 -6.6904 -0.8900 31 1 7.3142 -6.6885 0.8900 32 1 9.7095 -6.0460 0.8870 33 1 9.7078 -6.0480 -0.8930 34 1 9.0647 -8.3888 -0.7818 35 1 11.4171 -7.7865 -0.8923 36 1 11.4181 -7.7854 0.8877 37 1 11.2395 -10.1566 -2.0897 38 1 11.6120 -12.5959 -1.5516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154814968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:29 Heat of formation + Delta-G solvation = -4.788546 kcal Electronic energy + Delta-G solvation = -19520.973882 eV Core-core repulsion = 16229.981378 eV Total energy + Delta-G solvation = -3290.992504 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.41011 -39.27744 -37.38625 -35.17492 -32.85860 -32.44453 -30.98169 -29.19050 -27.05587 -25.63158 -24.59561 -23.41194 -21.94586 -20.44845 -20.32125 -18.39624 -17.85651 -16.67780 -16.37282 -16.25763 -16.15038 -15.50344 -15.21663 -14.94652 -14.63659 -14.35666 -14.22441 -13.80612 -13.63603 -13.28703 -12.97951 -12.80783 -12.69316 -12.22150 -12.01381 -11.83409 -11.59207 -11.27192 -11.22123 -11.01405 -10.90544 -10.61503 -10.11532 -9.86503 -9.55308 -9.20196 -9.08639 -9.03014 -8.97660 -8.51118 -6.92756 -6.29560 -4.01481 0.18333 1.03012 1.44059 1.96831 2.74523 2.95848 3.25241 3.32669 3.49854 3.53987 3.72737 4.02302 4.32508 4.39071 4.57108 4.63316 4.68113 4.70226 4.81117 4.82061 4.97136 5.09475 5.13507 5.23141 5.28138 5.30013 5.38030 5.44825 5.73275 5.81161 5.86039 6.00521 6.09259 6.28399 6.50766 6.70550 7.58564 7.93449 8.40971 8.47034 9.16592 10.79648 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.050971 B = 0.001557 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.198663 B =17978.282435 C =18202.748995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.737 5.737 14 C 0.123 3.877 15 C -0.129 4.129 16 C 0.062 3.938 17 N -0.685 5.685 18 C 0.132 3.868 19 C -0.165 4.165 20 C -0.206 4.206 21 C 0.088 3.912 22 N -0.465 5.465 23 S 0.280 5.720 24 H 0.271 0.729 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.400 0.600 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.346 0.654 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.155 0.845 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.947 -22.546 -1.875 32.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.392 5.392 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.067 4.067 17 N -0.317 5.317 18 C 0.001 3.999 19 C -0.296 4.296 20 C -0.242 4.242 21 C -0.109 4.109 22 N -0.286 5.286 23 S 0.432 5.568 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.234 0.766 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.164 0.836 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.172 0.828 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 25.153 -21.811 0.845 33.303 hybrid contribution -1.006 -0.001 -2.900 3.070 sum 24.147 -21.812 -2.055 32.605 Atomic orbital electron populations 1.69937 1.05913 1.27773 1.48049 1.24712 0.94448 0.98962 0.93165 0.86733 0.81901 0.83278 0.79923 1.19219 1.19925 1.15928 1.22321 0.88265 0.97555 1.58816 0.89375 1.84785 1.09297 1.00108 1.97433 1.23281 0.94007 1.04364 1.05838 1.20288 0.90610 0.82286 0.75215 1.90699 1.58816 1.42237 1.47753 1.45938 1.07426 1.08099 1.77710 1.21182 0.81723 0.94830 1.02445 1.21740 0.95864 0.95490 1.03640 1.21880 0.96080 0.87173 1.01581 1.60462 1.09086 1.11341 1.50799 1.20288 0.89956 0.86948 1.02685 1.25402 1.03904 1.01478 0.98811 1.21363 1.08700 0.92761 1.01353 1.22822 0.97764 0.96308 0.93977 1.76793 1.23734 1.19821 1.08257 1.84220 1.64064 0.94683 1.13863 0.91937 0.88499 0.88408 0.76595 0.91457 0.91700 0.91241 0.90086 0.90120 0.94359 0.83577 0.92543 0.89005 0.82786 0.80029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.48 13.97 55.49 0.78 -25.70 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.71 27.74 -169.99 -4.71 17.00 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.37 6.16 36.01 0.22 -2.14 16 11 C 0.53 9.21 7.85 -10.99 -0.09 9.12 16 12 O -0.52 -11.09 15.86 5.56 0.09 -11.00 16 13 N -0.74 -8.83 5.56 -60.30 -0.33 -9.16 16 14 C 0.12 1.21 5.67 -4.04 -0.02 1.19 16 15 C -0.13 -0.83 5.59 -26.73 -0.15 -0.98 16 16 C 0.06 0.35 5.69 -3.82 -0.02 0.32 16 17 N -0.68 -3.73 6.49 -115.05 -0.75 -4.48 16 18 C 0.13 0.63 6.26 -4.98 -0.03 0.60 16 19 C -0.17 -0.96 6.11 -35.41 -0.22 -1.18 16 20 C -0.21 -1.04 10.17 -40.84 -0.42 -1.46 16 21 C 0.09 0.52 11.27 -18.45 -0.21 0.32 16 22 N -0.47 -3.98 12.09 28.86 0.35 -3.63 16 23 S 0.28 2.04 23.72 -107.50 -2.55 -0.51 16 24 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 26 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 27 H 0.40 3.65 8.47 -40.82 -0.35 3.30 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.35 1.68 8.72 -39.29 -0.34 1.33 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.15 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.18 0.54 8.06 -52.48 -0.42 0.12 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -35.15 356.30 -9.81 -44.96 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.34 Total: -1.04 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.71 Total: -6.21 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.04 Total: -42.97 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -4.54 Total: -6.10 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.15 -9.81 -44.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.170 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds