Wall clock time and date at job start Tue Mar 31 2020 11:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86804 * 119.99739 * 2 1 4 4 H 1.48504 * 109.47066 * 270.00060 * 3 2 1 5 5 H 1.48504 * 109.47060 * 30.00309 * 3 2 1 6 6 H 1.48500 * 109.46913 * 150.00450 * 3 2 1 7 7 C 1.38792 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99830 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00427 * 179.97438 * 7 2 1 10 10 C 1.80995 * 100.00259 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47032 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00122 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99718 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99731 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.46980 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46880 * 180.02562 * 15 14 13 17 17 N 1.46904 * 109.47125 * 180.02562 * 16 15 14 18 18 C 1.46896 * 111.00044 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.47020 * 180.02562 * 18 17 16 20 20 C 1.33635 * 122.75319 * 94.72961 * 19 18 17 21 21 S 1.76192 * 107.92524 * 179.97438 * 20 19 18 22 22 C 1.70976 * 90.28427 * 0.27803 * 21 20 19 23 23 N 1.29027 * 110.16712 * 359.83656 * 22 21 20 24 24 H 0.97003 * 120.00520 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47045 * 59.99855 * 10 9 7 26 26 H 1.08999 * 109.47040 * 300.00229 * 10 9 7 27 27 H 0.96998 * 120.00113 * 0.02562 * 13 11 10 28 28 H 1.09004 * 109.46940 * 60.00719 * 14 13 11 29 29 H 1.08999 * 109.47576 * 300.00430 * 14 13 11 30 30 H 1.08991 * 109.47120 * 60.00609 * 15 14 13 31 31 H 1.08999 * 109.47146 * 300.00484 * 15 14 13 32 32 H 1.09004 * 109.47331 * 60.00331 * 16 15 14 33 33 H 1.08999 * 109.47285 * 299.99981 * 16 15 14 34 34 H 1.00897 * 110.99470 * 303.95499 * 17 16 15 35 35 H 1.09000 * 109.47401 * 59.99871 * 18 17 16 36 36 H 1.09002 * 109.46966 * 299.99612 * 18 17 16 37 37 H 1.08001 * 126.03202 * 0.03585 * 20 19 18 38 38 H 1.08001 * 124.91761 * 179.84059 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9844 -0.0009 11 6 5.5731 -3.2323 -0.0008 12 8 6.3441 -2.2961 -0.0014 13 7 6.0458 -4.4945 -0.0001 14 6 7.4908 -4.7355 -0.0006 15 6 7.7565 -6.2424 -0.0002 16 6 9.2656 -6.4940 0.0000 17 7 9.5208 -7.9408 -0.0003 18 6 10.9628 -8.2210 0.0005 19 6 11.1848 -9.7116 -0.0005 20 6 11.3838 -10.4122 -1.1209 21 16 11.5984 -12.1026 -0.6726 22 6 11.3911 -11.7004 0.9762 23 7 11.1923 -10.4319 1.1031 24 1 -0.4851 0.8400 0.0004 25 1 3.6434 -3.4316 -0.8906 26 1 3.6440 -3.4312 0.8893 27 1 5.4292 -5.2433 0.0000 28 1 7.9340 -4.2879 0.8890 29 1 7.9334 -4.2891 -0.8910 30 1 7.3134 -6.6896 -0.8899 31 1 7.3138 -6.6892 0.8900 32 1 9.7085 -6.0468 0.8899 33 1 9.7086 -6.0472 -0.8901 34 1 9.0653 -8.3883 0.7809 35 1 11.4170 -7.7861 0.8908 36 1 11.4180 -7.7857 -0.8892 37 1 11.4095 -10.0126 -2.1239 38 1 11.4222 -12.4060 1.7933 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154819202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:22 Heat of formation + Delta-G solvation = 2.232921 kcal Electronic energy + Delta-G solvation = -19579.439776 eV Core-core repulsion = 16288.751746 eV Total energy + Delta-G solvation = -3290.688030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35166 -39.28605 -37.10506 -34.94757 -32.43713 -32.33854 -30.69641 -29.11906 -26.85099 -25.62272 -25.12469 -23.61755 -21.87898 -20.40875 -20.03101 -18.53279 -17.83532 -16.84852 -16.32820 -16.19286 -16.07178 -15.46287 -15.21995 -14.93958 -14.75071 -14.25241 -14.17715 -13.80225 -13.71406 -13.25897 -12.95586 -12.79117 -12.65577 -12.27019 -11.94873 -11.75725 -11.68801 -11.25418 -11.16201 -10.99809 -10.59388 -10.19075 -9.95597 -9.84949 -9.52799 -9.43735 -9.01300 -8.95727 -8.88798 -8.49056 -6.90810 -6.28016 -3.99744 0.22946 0.89930 1.23382 2.23090 2.77690 2.99366 3.30140 3.34614 3.51481 3.59537 3.69998 3.96765 4.34113 4.47256 4.60790 4.67819 4.71035 4.80749 4.85895 4.88030 5.05932 5.11051 5.23341 5.27861 5.33671 5.37208 5.52159 5.61141 5.76804 5.87306 5.92813 6.03050 6.44721 6.56215 6.85698 7.21322 7.62734 7.94995 8.42528 8.50690 9.18204 10.81186 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.052634 B = 0.001529 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.847173 B =18311.335351 C =18588.694063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.521 6.521 13 N -0.737 5.737 14 C 0.123 3.877 15 C -0.129 4.129 16 C 0.062 3.938 17 N -0.685 5.685 18 C 0.134 3.866 19 C 0.062 3.938 20 C -0.232 4.232 21 S 0.119 5.881 22 C 0.021 3.979 23 N -0.468 5.468 24 H 0.271 0.729 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.400 0.600 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.346 0.654 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.179 0.821 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.677 -26.092 -0.759 35.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.391 5.391 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.067 4.067 17 N -0.316 5.316 18 C 0.002 3.998 19 C -0.070 4.070 20 C -0.372 4.372 21 S 0.371 5.629 22 C -0.278 4.278 23 N -0.182 5.182 24 H 0.080 0.920 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.234 0.766 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.164 0.836 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.197 0.803 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 25.856 -25.199 -1.417 36.133 hybrid contribution -1.038 0.252 0.919 1.409 sum 24.818 -24.947 -0.499 35.193 Atomic orbital electron populations 1.69938 1.05913 1.27755 1.48101 1.24710 0.94447 0.98958 0.93172 0.86733 0.81898 0.83274 0.79935 1.19205 1.19939 1.15931 1.22324 0.88292 0.97554 1.58762 0.89381 1.84781 1.09260 1.00153 1.97429 1.23280 0.94047 1.04325 1.05829 1.20283 0.90592 0.82304 0.75243 1.90696 1.58816 1.42240 1.47779 1.45942 1.07471 1.08071 1.77659 1.21191 0.81635 0.94925 1.02424 1.21734 0.96049 0.95369 1.03524 1.21865 0.95865 0.87595 1.01418 1.60501 1.09588 1.10945 1.50616 1.20393 0.89672 0.87543 1.02148 1.20196 1.02276 0.97785 0.86708 1.26910 1.10747 0.95328 1.04224 1.84138 1.65594 1.08684 1.04496 1.28385 1.03726 0.95432 1.00233 1.66135 1.15480 1.04975 1.31616 0.91951 0.88467 0.88459 0.76616 0.91687 0.91487 0.90216 0.91291 0.94476 0.90301 0.83572 0.93142 0.89162 0.80317 0.78365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.67 13.97 55.49 0.78 -25.89 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.90 27.74 -169.99 -4.71 17.18 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 8 H 0.09 2.66 8.03 -52.48 -0.42 2.23 16 9 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 11 C 0.53 9.48 7.85 -10.98 -0.09 9.39 16 12 O -0.52 -11.36 15.86 5.56 0.09 -11.27 16 13 N -0.74 -9.31 5.56 -60.29 -0.33 -9.64 16 14 C 0.12 1.31 5.67 -4.04 -0.02 1.29 16 15 C -0.13 -0.97 5.59 -26.73 -0.15 -1.12 16 16 C 0.06 0.44 5.69 -3.82 -0.02 0.41 16 17 N -0.69 -5.00 6.49 -115.05 -0.75 -5.75 16 18 C 0.13 0.92 6.12 -4.98 -0.03 0.89 16 19 C 0.06 0.47 6.25 -84.22 -0.53 -0.05 16 20 C -0.23 -1.44 11.11 29.12 0.32 -1.11 16 21 S 0.12 0.58 23.22 -107.50 -2.50 -1.92 16 22 C 0.02 0.12 12.23 51.58 0.63 0.75 16 23 N -0.47 -3.90 10.53 -11.89 -0.13 -4.03 16 24 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 26 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 27 H 0.40 3.90 8.47 -40.82 -0.35 3.56 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.35 2.64 8.72 -39.29 -0.34 2.29 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.20 0.54 8.06 -52.49 -0.42 0.11 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -35.33 356.11 -8.97 -44.30 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.34 Total: 1.13 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 0.55 Total: -3.85 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.43 Total: -45.30 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -4.49 Total: -7.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.33 -8.97 -44.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154819202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.532 kcal (2) G-P(sol) polarization free energy of solvation -35.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds